Wall clock time and date at job start Tue Mar 31 2020 23:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 110.00148 * 2 1 4 4 C 1.54315 * 109.77504 * 121.15099 * 2 1 3 5 5 H 1.09008 * 111.07615 * 23.40325 * 4 2 1 6 6 N 1.46895 * 110.59629 * 260.14700 * 4 2 1 7 7 C 1.46894 * 111.00505 * 160.19074 * 6 4 2 8 8 C 1.50699 * 109.47287 * 179.97438 * 7 6 4 9 9 O 1.21294 * 120.00145 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00248 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00480 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99472 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00181 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99821 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99806 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46960 * 89.99932 * 15 13 11 17 17 H 1.48493 * 109.46796 * 209.99983 * 15 13 11 18 18 H 1.48500 * 109.46970 * 330.00101 * 15 13 11 19 19 C 1.55162 * 102.86378 * 141.88446 * 4 2 1 20 20 C 1.54908 * 101.58290 * 324.30506 * 19 4 2 21 21 N 1.47015 * 109.88237 * 238.90062 * 2 1 3 22 22 C 1.34778 * 125.65173 * 61.68222 * 21 2 1 23 23 O 1.21373 * 119.99427 * 359.71532 * 22 21 2 24 24 C 1.49086 * 120.00412 * 179.71491 * 22 21 2 25 25 O 1.20783 * 120.00068 * 0.02562 * 24 22 21 26 26 C 1.50701 * 119.99921 * 179.71902 * 24 22 21 27 27 C 1.52996 * 109.46972 * 180.27385 * 26 24 22 28 28 C 1.52998 * 109.47419 * 300.27714 * 26 24 22 29 29 C 1.53004 * 109.46666 * 60.28021 * 26 24 22 30 30 H 1.09001 * 109.47176 * 179.64633 * 1 2 3 31 31 H 1.09003 * 109.47277 * 299.64306 * 1 2 3 32 32 H 1.09003 * 109.47132 * 59.64176 * 1 2 3 33 33 H 1.00910 * 111.00036 * 36.23513 * 6 4 2 34 34 H 1.08997 * 109.47448 * 299.99781 * 7 6 4 35 35 H 1.09003 * 109.46923 * 60.00307 * 7 6 4 36 36 H 0.97006 * 120.00113 * 0.02562 * 10 8 7 37 37 H 0.97007 * 119.99434 * 179.97438 * 14 13 11 38 38 H 1.09003 * 111.00271 * 206.23342 * 19 4 2 39 39 H 1.08992 * 111.00440 * 82.38054 * 19 4 2 40 40 H 1.09005 * 110.36750 * 278.17780 * 20 19 4 41 41 H 1.08994 * 110.36744 * 155.84419 * 20 19 4 42 42 H 1.09006 * 109.46938 * 60.00809 * 27 26 24 43 43 H 1.09005 * 109.47129 * 180.02562 * 27 26 24 44 44 H 1.09000 * 109.47764 * 300.00587 * 27 26 24 45 45 H 1.09004 * 109.46783 * 60.00191 * 28 26 24 46 46 H 1.08996 * 109.47009 * 179.97438 * 28 26 24 47 47 H 1.08998 * 109.47126 * 300.00345 * 28 26 24 48 48 H 1.08994 * 109.47496 * 59.99982 * 29 26 24 49 49 H 1.09005 * 109.46605 * 179.97438 * 29 26 24 50 50 H 1.08996 * 109.47142 * 299.99154 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7512 1.2428 5 1 1.3062 -1.4511 1.6197 6 7 2.4483 0.1979 2.2916 7 6 2.4950 -0.4582 3.6051 8 6 2.9048 0.5442 4.6530 9 8 3.1348 1.6924 4.3369 10 7 3.0156 0.1649 5.9416 11 6 3.3890 1.0768 6.8949 12 1 3.5938 2.0991 6.6134 13 6 3.5027 0.6858 8.2234 14 7 3.2530 -0.5580 8.5659 15 14 4.0107 1.9284 9.5224 16 1 2.8008 2.5859 10.0784 17 1 4.7418 1.2340 10.6125 18 1 4.8932 2.9531 8.9089 19 6 3.2889 -1.5101 0.6934 20 6 2.8191 -1.8764 -0.7366 21 7 2.0299 -0.7141 -1.1838 22 6 1.8086 -0.3614 -2.4657 23 8 1.1408 0.6201 -2.7182 24 6 2.3839 -1.1768 -3.5733 25 8 3.0480 -2.1538 -3.3219 26 6 2.1310 -0.7859 -5.0066 27 6 2.8223 -1.7846 -5.9370 28 6 0.6255 -0.7927 -5.2791 29 6 2.6887 0.6163 -5.2587 30 1 -0.3633 -1.0277 -0.0063 31 1 -0.3634 0.5083 0.8932 32 1 -0.3633 0.5194 -0.8868 33 1 1.8320 0.9967 2.3081 34 1 1.5096 -0.8559 3.8478 35 1 3.2191 -1.2725 3.5789 36 1 2.8320 -0.7534 6.1944 37 1 3.3328 -0.8310 9.4934 38 1 3.4896 -2.4065 1.2802 39 1 4.1638 -0.8609 0.6629 40 1 2.1970 -2.7712 -0.7141 41 1 3.6776 -2.0265 -1.3911 42 1 2.4249 -2.7836 -5.7574 43 1 2.6397 -1.5016 -6.9737 44 1 3.8948 -1.7798 -5.7429 45 1 0.1331 -0.0812 -4.6162 46 1 0.4427 -0.5096 -6.3156 47 1 0.2282 -1.7917 -5.0994 48 1 3.7612 0.6212 -5.0646 49 1 2.5062 0.8989 -6.2955 50 1 2.1963 1.3278 -4.5959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734388985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:03 Heat of formation + Delta-G solvation = -102.196489 kcal Electronic energy + Delta-G solvation = -29949.456776 eV Core-core repulsion = 25783.948512 eV Total energy + Delta-G solvation = -4165.508263 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.36229 -39.60694 -38.38027 -37.83619 -36.21137 -34.72040 -33.80635 -31.66976 -31.27101 -30.74657 -27.84178 -27.69281 -27.09634 -26.09248 -25.07048 -23.71993 -23.10292 -21.22144 -20.28102 -19.23632 -18.74324 -17.91052 -17.37780 -16.99856 -16.37731 -16.14029 -15.75971 -15.41989 -15.29405 -14.73894 -14.49040 -14.20681 -14.02720 -13.97385 -13.88669 -13.54105 -13.43348 -13.19914 -13.05421 -12.81528 -12.59186 -12.58273 -12.44181 -12.27046 -12.01436 -11.85305 -11.80256 -11.74763 -11.57709 -11.43261 -11.37918 -11.14752 -11.02925 -10.97146 -10.76801 -10.40633 -10.23599 -9.53082 -9.47383 -8.98271 -8.51540 -8.17320 -7.98617 -6.43769 -3.84593 0.68004 2.26961 2.70606 3.16671 3.25602 3.31618 3.57372 3.87730 4.00679 4.13312 4.25290 4.36103 4.41559 4.44647 4.48917 4.86622 4.89435 5.01315 5.06895 5.15542 5.17369 5.21284 5.23968 5.27132 5.34847 5.38474 5.42967 5.46054 5.48343 5.53972 5.55271 5.71595 5.73677 5.80416 5.80840 5.86777 5.88799 5.92646 5.99923 6.04749 6.09769 6.25074 6.59853 7.09193 7.13024 7.53136 7.53603 7.64523 8.03994 8.58688 9.15809 9.51703 10.02914 10.73869 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031876 B = 0.001883 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.195064 B =14868.068423 C =15064.177167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 H 0.094 0.906 4 C 0.078 3.922 5 H 0.063 0.937 6 N -0.656 5.656 7 C 0.051 3.949 8 C 0.440 3.560 9 O -0.583 6.583 10 N -0.563 5.563 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.901 5.901 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C -0.127 4.127 20 C 0.094 3.906 21 N -0.585 5.585 22 C 0.489 3.511 23 O -0.507 6.507 24 C 0.363 3.637 25 O -0.414 6.414 26 C -0.094 4.094 27 C -0.136 4.136 28 C -0.143 4.143 29 C -0.144 4.144 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.352 0.648 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.695 -6.627 -26.042 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.028 3.972 3 H 0.112 0.888 4 C -0.033 4.033 5 H 0.080 0.920 6 N -0.289 5.289 7 C -0.081 4.081 8 C 0.225 3.775 9 O -0.467 6.467 10 N -0.199 5.199 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.166 4.166 20 C -0.029 4.029 21 N -0.320 5.320 22 C 0.274 3.726 23 O -0.383 6.383 24 C 0.232 3.768 25 O -0.283 6.283 26 C -0.095 4.095 27 C -0.193 4.193 28 C -0.201 4.201 29 C -0.202 4.202 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.173 0.827 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.863 -6.006 -26.239 27.193 hybrid contribution -0.788 -0.258 1.237 1.489 sum -4.651 -6.265 -25.002 26.191 Atomic orbital electron populations 1.22173 0.94217 1.02376 1.03484 1.21793 0.94532 0.97364 0.83535 0.88828 1.22629 0.95921 0.93961 0.90822 0.91965 1.60152 1.57304 1.08633 1.02853 1.21713 1.00412 0.97158 0.88829 1.19766 0.85095 0.89218 0.83378 1.90533 1.55289 1.20043 1.80821 1.41859 1.59944 1.12704 1.05438 1.19705 1.42595 0.93957 0.86645 0.87899 1.25267 0.97513 0.96902 0.98271 1.69611 1.49275 1.16219 1.19162 0.85850 0.78725 0.79937 0.79743 1.20422 1.20915 1.19389 1.22954 0.98858 1.01034 0.93705 1.22717 0.96000 0.87779 0.96359 1.48576 1.50326 1.28432 1.04637 1.20580 0.82673 0.86459 0.82913 1.90711 1.38307 1.26442 1.82845 1.24932 0.76737 0.83044 0.92044 1.90379 1.28334 1.23406 1.86226 1.20954 0.98935 0.98613 0.91005 1.21787 1.00778 0.98226 0.98518 1.21909 0.91995 1.02819 1.03338 1.21916 1.00942 0.93919 1.03374 0.92479 0.91167 0.90885 0.82701 0.93654 0.89451 0.77456 0.91861 0.89662 0.89112 0.90958 0.88631 0.91981 0.91412 0.91918 0.90104 0.91122 0.92589 0.92474 0.91129 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.11 37.16 0.34 -1.41 16 2 C 0.13 1.53 2.98 -66.96 -0.20 1.33 16 3 H 0.09 1.25 7.97 -51.93 -0.41 0.83 16 4 C 0.08 0.91 2.76 -65.88 -0.18 0.73 16 5 H 0.06 0.68 7.62 -51.92 -0.40 0.29 16 6 N -0.66 -10.03 5.92 -106.06 -0.63 -10.66 16 7 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 8 C 0.44 10.16 7.82 -10.99 -0.09 10.07 16 9 O -0.58 -15.61 15.78 5.55 0.09 -15.53 16 10 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 11 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 15 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 C -0.13 -1.36 6.71 -24.58 -0.16 -1.52 16 20 C 0.09 0.94 6.06 -2.52 -0.02 0.92 16 21 N -0.58 -6.63 3.07 -163.67 -0.50 -7.13 16 22 C 0.49 5.66 7.37 -11.76 -0.09 5.58 16 23 O -0.51 -6.58 12.42 5.48 0.07 -6.51 16 24 C 0.36 3.64 6.00 -29.81 -0.18 3.46 16 25 O -0.41 -4.53 13.39 5.98 0.08 -4.45 16 26 C -0.09 -0.74 0.76 -155.66 -0.12 -0.85 16 27 C -0.14 -0.91 7.76 37.16 0.29 -0.62 16 28 C -0.14 -1.02 8.29 37.16 0.31 -0.71 16 29 C -0.14 -1.08 8.29 37.16 0.31 -0.77 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.85 6.88 -51.93 -0.36 0.49 16 33 H 0.35 5.61 8.15 -39.29 -0.32 5.29 16 34 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 35 H 0.09 1.34 8.13 -51.93 -0.42 0.92 16 36 H 0.39 9.32 7.90 -40.82 -0.32 8.99 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.97 6.16 -51.93 -0.32 0.65 16 42 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 45 H 0.08 0.69 6.42 -51.93 -0.33 0.36 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.74 6.44 -51.93 -0.33 0.40 16 LS Contribution 401.73 15.07 6.05 6.05 Total: -1.00 -31.43 401.73 -7.47 -38.90 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: -8.22 Total: 11.96 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -0.06 Total: 9.10 kcal Atomic # 7 Polarization: -54.99 SS G_CDS: -0.46 Total: -55.46 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: 0.24 Total: -26.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.43 -7.47 -38.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.292 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds