Wall clock time and date at job start Tue Mar 31 2020 23:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 110.00148 * 2 1 4 4 C 1.54315 * 109.77504 * 121.15099 * 2 1 3 5 5 H 1.09008 * 111.07615 * 23.40325 * 4 2 1 6 6 N 1.46895 * 110.59629 * 260.14700 * 4 2 1 7 7 C 1.46894 * 111.00505 * 160.19074 * 6 4 2 8 8 C 1.50699 * 109.47287 * 179.97438 * 7 6 4 9 9 O 1.21294 * 120.00145 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00248 * 180.02562 * 8 7 6 11 11 C 1.37102 * 120.00480 * 179.97438 * 10 8 7 12 12 H 1.08000 * 119.99472 * 0.02562 * 11 10 8 13 13 C 1.38949 * 120.00181 * 179.97438 * 11 10 8 14 14 N 1.31405 * 119.99821 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99806 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46960 * 89.99932 * 15 13 11 17 17 H 1.48493 * 109.46796 * 209.99983 * 15 13 11 18 18 H 1.48500 * 109.46970 * 330.00101 * 15 13 11 19 19 C 1.55162 * 102.86378 * 141.88446 * 4 2 1 20 20 C 1.54908 * 101.58290 * 324.30506 * 19 4 2 21 21 N 1.47015 * 109.88237 * 238.90062 * 2 1 3 22 22 C 1.34778 * 125.65173 * 61.68222 * 21 2 1 23 23 O 1.21373 * 119.99427 * 359.71532 * 22 21 2 24 24 C 1.49086 * 120.00412 * 179.71491 * 22 21 2 25 25 O 1.20783 * 120.00068 * 0.02562 * 24 22 21 26 26 C 1.50701 * 119.99921 * 179.71902 * 24 22 21 27 27 C 1.52996 * 109.46972 * 180.27385 * 26 24 22 28 28 C 1.52998 * 109.47419 * 300.27714 * 26 24 22 29 29 C 1.53004 * 109.46666 * 60.28021 * 26 24 22 30 30 H 1.09001 * 109.47176 * 179.64633 * 1 2 3 31 31 H 1.09003 * 109.47277 * 299.64306 * 1 2 3 32 32 H 1.09003 * 109.47132 * 59.64176 * 1 2 3 33 33 H 1.00910 * 111.00036 * 36.23513 * 6 4 2 34 34 H 1.08997 * 109.47448 * 299.99781 * 7 6 4 35 35 H 1.09003 * 109.46923 * 60.00307 * 7 6 4 36 36 H 0.97006 * 120.00113 * 0.02562 * 10 8 7 37 37 H 0.97007 * 119.99434 * 179.97438 * 14 13 11 38 38 H 1.09003 * 111.00271 * 206.23342 * 19 4 2 39 39 H 1.08992 * 111.00440 * 82.38054 * 19 4 2 40 40 H 1.09005 * 110.36750 * 278.17780 * 20 19 4 41 41 H 1.08994 * 110.36744 * 155.84419 * 20 19 4 42 42 H 1.09006 * 109.46938 * 60.00809 * 27 26 24 43 43 H 1.09005 * 109.47129 * 180.02562 * 27 26 24 44 44 H 1.09000 * 109.47764 * 300.00587 * 27 26 24 45 45 H 1.09004 * 109.46783 * 60.00191 * 28 26 24 46 46 H 1.08996 * 109.47009 * 179.97438 * 28 26 24 47 47 H 1.08998 * 109.47126 * 300.00345 * 28 26 24 48 48 H 1.08994 * 109.47496 * 59.99982 * 29 26 24 49 49 H 1.09005 * 109.46605 * 179.97438 * 29 26 24 50 50 H 1.08996 * 109.47142 * 299.99154 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0520 -0.7512 1.2428 5 1 1.3062 -1.4511 1.6197 6 7 2.4483 0.1979 2.2916 7 6 2.4950 -0.4582 3.6051 8 6 2.9048 0.5442 4.6530 9 8 3.1348 1.6924 4.3369 10 7 3.0156 0.1649 5.9416 11 6 3.3890 1.0768 6.8949 12 1 3.5938 2.0991 6.6134 13 6 3.5027 0.6858 8.2234 14 7 3.2530 -0.5580 8.5659 15 14 4.0107 1.9284 9.5224 16 1 2.8008 2.5859 10.0784 17 1 4.7418 1.2340 10.6125 18 1 4.8932 2.9531 8.9089 19 6 3.2889 -1.5101 0.6934 20 6 2.8191 -1.8764 -0.7366 21 7 2.0299 -0.7141 -1.1838 22 6 1.8086 -0.3614 -2.4657 23 8 1.1408 0.6201 -2.7182 24 6 2.3839 -1.1768 -3.5733 25 8 3.0480 -2.1538 -3.3219 26 6 2.1310 -0.7859 -5.0066 27 6 2.8223 -1.7846 -5.9370 28 6 0.6255 -0.7927 -5.2791 29 6 2.6887 0.6163 -5.2587 30 1 -0.3633 -1.0277 -0.0063 31 1 -0.3634 0.5083 0.8932 32 1 -0.3633 0.5194 -0.8868 33 1 1.8320 0.9967 2.3081 34 1 1.5096 -0.8559 3.8478 35 1 3.2191 -1.2725 3.5789 36 1 2.8320 -0.7534 6.1944 37 1 3.3328 -0.8310 9.4934 38 1 3.4896 -2.4065 1.2802 39 1 4.1638 -0.8609 0.6629 40 1 2.1970 -2.7712 -0.7141 41 1 3.6776 -2.0265 -1.3911 42 1 2.4249 -2.7836 -5.7574 43 1 2.6397 -1.5016 -6.9737 44 1 3.8948 -1.7798 -5.7429 45 1 0.1331 -0.0812 -4.6162 46 1 0.4427 -0.5096 -6.3156 47 1 0.2282 -1.7917 -5.0994 48 1 3.7612 0.6212 -5.0646 49 1 2.5062 0.8989 -6.2955 50 1 2.1963 1.3278 -4.5959 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734388985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:37:02 Heat of formation + Delta-G solvation = -123.985245 kcal Electronic energy + Delta-G solvation = -29950.401607 eV Core-core repulsion = 25783.948512 eV Total energy + Delta-G solvation = -4166.453095 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.20144 -40.56486 -39.98623 -38.92459 -36.93956 -36.14986 -35.51178 -33.27471 -32.54982 -31.81263 -28.61573 -28.30183 -28.26380 -26.91438 -26.52840 -25.10096 -23.93757 -22.11717 -21.33939 -20.86179 -19.90124 -19.53479 -18.29503 -17.89240 -17.77937 -17.06590 -16.87459 -16.61339 -16.41892 -16.20417 -15.80888 -15.45122 -15.38888 -14.83201 -14.75110 -14.61219 -14.44803 -14.39012 -14.02661 -13.88422 -13.52221 -13.47026 -13.33949 -13.14002 -13.08492 -13.07133 -12.84999 -12.75044 -12.60294 -12.56700 -12.41883 -12.36708 -12.12674 -12.02096 -11.94865 -11.75424 -11.66367 -11.50609 -10.35931 -10.29959 -10.01274 -9.88427 -9.41304 -8.46667 -5.95059 -0.14682 1.37965 1.41416 1.42779 1.54640 1.84307 2.05707 2.29046 2.74712 2.88478 3.20865 3.39613 3.45949 3.50010 3.58115 3.83434 3.86383 3.98290 4.16758 4.21385 4.25868 4.28694 4.33572 4.47604 4.49221 4.58653 4.64699 4.68150 4.71478 4.72931 4.83196 4.90139 4.91560 4.92049 4.96282 4.99399 5.06334 5.16160 5.19829 5.20335 5.30874 5.35114 5.41443 5.79820 5.87012 6.08150 6.22195 6.30984 6.60373 6.75505 7.13077 7.56730 8.12215 8.70539 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031876 B = 0.001883 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.195064 B =14868.068423 C =15064.177167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.132 3.868 3 H 0.070 0.930 4 C 0.083 3.917 5 H 0.083 0.917 6 N -0.671 5.671 7 C 0.068 3.932 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.333 4.333 12 H 0.078 0.922 13 C -0.013 4.013 14 N -0.919 5.919 15 Si 0.992 3.008 16 H -0.271 1.271 17 H -0.271 1.271 18 H -0.274 1.274 19 C -0.123 4.123 20 C 0.099 3.901 21 N -0.589 5.589 22 C 0.481 3.519 23 O -0.525 6.525 24 C 0.365 3.635 25 O -0.424 6.424 26 C -0.093 4.093 27 C -0.132 4.132 28 C -0.140 4.140 29 C -0.142 4.142 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.346 0.654 34 H 0.072 0.928 35 H 0.108 0.892 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.105 0.895 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.091 0.909 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.041 -8.168 -26.895 28.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.028 3.972 3 H 0.088 0.912 4 C -0.027 4.027 5 H 0.101 0.899 6 N -0.304 5.304 7 C -0.065 4.065 8 C 0.225 3.775 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.463 4.463 12 H 0.096 0.904 13 C -0.212 4.212 14 N -0.560 5.560 15 Si 0.815 3.185 16 H -0.196 1.196 17 H -0.195 1.195 18 H -0.199 1.199 19 C -0.162 4.162 20 C -0.023 4.023 21 N -0.323 5.323 22 C 0.267 3.733 23 O -0.403 6.403 24 C 0.236 3.764 25 O -0.294 6.294 26 C -0.094 4.094 27 C -0.189 4.189 28 C -0.197 4.197 29 C -0.199 4.199 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.166 0.834 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.109 0.891 47 H 0.078 0.922 48 H 0.074 0.926 49 H 0.110 0.890 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.212 -7.588 -27.102 28.458 hybrid contribution -0.680 0.244 1.440 1.611 sum -4.892 -7.344 -25.662 27.136 Atomic orbital electron populations 1.22093 0.93297 1.02966 1.03075 1.21697 0.95191 0.96323 0.83963 0.91153 1.22662 0.96943 0.93477 0.89647 0.89916 1.60130 1.58014 1.09343 1.02900 1.21568 1.02129 0.95383 0.87377 1.20886 0.83056 0.89791 0.83794 1.90505 1.56642 1.22436 1.81556 1.41918 1.60553 1.12542 1.05938 1.19647 1.44808 0.93709 0.88148 0.90433 1.26014 0.96939 0.98745 0.99541 1.69665 1.49158 1.17216 1.19913 0.84946 0.78484 0.77709 0.77315 1.19648 1.19532 1.19929 1.22943 0.97591 1.01266 0.94385 1.22765 0.96104 0.87770 0.95684 1.48704 1.50327 1.28733 1.04565 1.21027 0.82476 0.86476 0.83337 1.90703 1.39138 1.27274 1.83185 1.25130 0.76201 0.82532 0.92556 1.90371 1.28810 1.23757 1.86421 1.21042 0.99705 0.99100 0.89574 1.21780 1.00169 0.97676 0.99279 1.21889 0.91100 1.02573 1.04138 1.21902 1.00569 0.93225 1.04208 0.91278 0.90739 0.92144 0.83403 0.90975 0.87353 0.76871 0.91301 0.87692 0.90972 0.89218 0.88759 0.92164 0.89325 0.92462 0.91901 0.89098 0.92208 0.92590 0.89004 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.11 71.98 0.66 -2.56 16 2 C 0.13 3.02 2.98 45.34 0.14 3.16 16 3 H 0.07 1.95 7.97 -2.39 -0.02 1.93 16 4 C 0.08 1.82 2.76 46.10 0.13 1.94 16 5 H 0.08 1.54 7.62 -2.38 -0.02 1.52 16 6 N -0.67 -19.98 5.92 -489.47 -2.90 -22.88 16 7 C 0.07 2.16 6.02 85.56 0.52 2.67 16 8 C 0.44 20.28 7.82 87.66 0.69 20.97 16 9 O -0.62 -34.33 15.78 -3.07 -0.05 -34.38 16 10 N -0.57 -28.80 5.29 -306.98 -1.62 -30.43 16 11 C -0.33 -18.81 9.68 84.04 0.81 -17.99 16 12 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 13 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 14 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 15 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 16 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 17 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 19 C -0.12 -2.43 6.71 31.99 0.21 -2.22 16 20 C 0.10 1.81 6.06 86.85 0.53 2.34 16 21 N -0.59 -13.00 3.07 -790.09 -2.42 -15.42 16 22 C 0.48 11.09 7.37 87.16 0.64 11.73 16 23 O -0.53 -13.91 12.42 -3.32 -0.04 -13.96 16 24 C 0.37 7.07 6.00 28.60 0.17 7.25 16 25 O -0.42 -8.81 13.39 -1.52 -0.02 -8.83 16 26 C -0.09 -1.34 0.76 -52.93 -0.04 -1.38 16 27 C -0.13 -1.50 7.76 71.98 0.56 -0.94 16 28 C -0.14 -1.79 8.29 71.98 0.60 -1.19 16 29 C -0.14 -1.98 8.29 71.98 0.60 -1.39 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.40 6.88 -2.39 -0.02 1.38 16 33 H 0.35 11.06 8.15 -89.69 -0.73 10.32 16 34 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 35 H 0.11 3.05 8.13 -2.39 -0.02 3.03 16 36 H 0.40 18.83 7.90 -92.70 -0.73 18.09 16 37 H 0.28 13.86 8.31 -92.70 -0.77 13.09 16 38 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 41 H 0.09 1.79 6.16 -2.39 -0.01 1.78 16 42 H 0.06 0.72 8.10 -2.38 -0.02 0.70 16 43 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.06 0.72 8.10 -2.39 -0.02 0.70 16 45 H 0.06 1.05 6.42 -2.38 -0.02 1.04 16 46 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 49 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.06 1.12 6.44 -2.39 -0.02 1.11 16 Total: -1.00 -68.87 401.73 1.42 -67.45 By element: Atomic # 1 Polarization: 40.64 SS G_CDS: -0.50 Total: 40.14 kcal Atomic # 6 Polarization: 15.54 SS G_CDS: 6.67 Total: 22.21 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -6.66 Total: -117.41 kcal Atomic # 8 Polarization: -57.06 SS G_CDS: -0.11 Total: -57.17 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -68.87 1.42 -67.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734388985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.538 kcal (2) G-P(sol) polarization free energy of solvation -68.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds