Wall clock time and date at job start Tue Mar 31 2020 23:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.32928 * 2 1 4 4 C 1.54914 * 110.36609 * 237.64821 * 2 1 3 5 5 C 1.55405 * 101.66697 * 204.23699 * 4 2 1 6 6 H 1.09000 * 110.69068 * 277.04987 * 5 4 2 7 7 N 1.46893 * 110.85117 * 153.69868 * 5 4 2 8 8 C 1.46900 * 110.99631 * 160.08500 * 7 5 4 9 9 C 1.50706 * 109.46900 * 180.02562 * 8 7 5 10 10 O 1.21292 * 119.99996 * 0.02562 * 9 8 7 11 11 N 1.34775 * 120.00256 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00206 * 179.97438 * 11 9 8 13 13 H 1.08000 * 120.00437 * 0.02562 * 12 11 9 14 14 C 1.38952 * 119.99952 * 180.02562 * 12 11 9 15 15 N 1.31404 * 120.00148 * 180.02562 * 14 12 11 16 16 Si 1.86806 * 119.99886 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47155 * 89.99777 * 16 14 12 18 18 H 1.48500 * 109.47044 * 210.00158 * 16 14 12 19 19 H 1.48493 * 109.47204 * 329.99612 * 16 14 12 20 20 C 1.54325 * 102.82616 * 35.33729 * 5 4 2 21 21 N 1.47018 * 107.40412 * 337.97548 * 20 5 4 22 22 C 1.34777 * 125.64981 * 178.82520 * 21 20 5 23 23 O 1.21366 * 120.00376 * 180.02562 * 22 21 20 24 24 C 1.49089 * 119.99849 * 0.02743 * 22 21 20 25 25 O 1.20785 * 119.99906 * 0.02562 * 24 22 21 26 26 C 1.50701 * 120.00125 * 179.97438 * 24 22 21 27 27 C 1.53000 * 109.47073 * 179.97438 * 26 24 22 28 28 C 1.53002 * 109.47011 * 300.00275 * 26 24 22 29 29 C 1.53000 * 109.47012 * 59.99873 * 26 24 22 30 30 H 1.09004 * 109.46570 * 299.21414 * 1 2 3 31 31 H 1.09003 * 109.47239 * 59.20855 * 1 2 3 32 32 H 1.08991 * 109.47514 * 179.21739 * 1 2 3 33 33 H 1.09000 * 111.00339 * 322.23129 * 4 2 1 34 34 H 1.09001 * 111.00161 * 86.07723 * 4 2 1 35 35 H 1.00899 * 111.00103 * 284.03938 * 7 5 4 36 36 H 1.08997 * 109.47405 * 299.99781 * 8 7 5 37 37 H 1.08992 * 109.47013 * 60.00433 * 8 7 5 38 38 H 0.97004 * 119.99666 * 0.02562 * 11 9 8 39 39 H 0.97003 * 120.00448 * 179.97438 * 15 14 12 40 40 H 1.09002 * 109.88192 * 218.47989 * 20 5 4 41 41 H 1.09000 * 109.88128 * 97.46841 * 20 5 4 42 42 H 1.09001 * 109.46935 * 60.00553 * 27 26 24 43 43 H 1.09000 * 109.46539 * 180.02562 * 27 26 24 44 44 H 1.08993 * 109.47267 * 300.00054 * 27 26 24 45 45 H 1.08995 * 109.47121 * 59.99834 * 28 26 24 46 46 H 1.09003 * 109.46657 * 179.97438 * 28 26 24 47 47 H 1.08999 * 109.47072 * 299.99354 * 28 26 24 48 48 H 1.09009 * 109.47014 * 59.99940 * 29 26 24 49 49 H 1.08993 * 109.47408 * 179.97438 * 29 26 24 50 50 H 1.09000 * 109.47758 * 300.00538 * 29 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0691 -0.7772 -1.2269 5 6 3.4795 -1.2042 -0.7334 6 1 4.1975 -0.3961 -0.8734 7 7 3.9267 -2.4234 -1.4199 8 6 5.3856 -2.5714 -1.3330 9 6 5.8062 -3.8300 -2.0473 10 8 4.9727 -4.5341 -2.5771 11 7 7.1086 -4.1728 -2.0984 12 6 7.4912 -5.3180 -2.7477 13 1 6.7490 -5.9454 -3.2187 14 6 8.8340 -5.6715 -2.7999 15 7 9.2007 -6.7689 -3.4227 16 14 10.1178 -4.5868 -1.9846 17 1 10.3137 -5.0228 -0.5787 18 1 11.4020 -4.7003 -2.7216 19 1 9.6583 -3.1749 -2.0055 20 6 3.2493 -1.4761 0.7681 21 7 2.0431 -0.7373 1.1690 22 6 1.4965 -0.7351 2.4009 23 8 0.4946 -0.0857 2.6191 24 6 2.1225 -1.5303 3.4956 25 8 3.1198 -2.1762 3.2786 26 6 1.5116 -1.5274 4.8733 27 6 2.3415 -2.4170 5.8010 28 6 1.4917 -0.0983 5.4193 29 6 0.0809 -2.0644 4.7979 30 1 -0.3632 0.5016 0.8970 31 1 -0.3634 0.5261 -0.8828 32 1 -0.3634 -1.0275 -0.0140 33 1 1.4510 -1.6494 -1.4393 34 1 2.1398 -0.1285 -2.1000 35 1 3.4580 -3.2379 -1.0523 36 1 5.8665 -1.7116 -1.7992 37 1 5.6830 -2.6308 -0.2861 38 1 7.7753 -3.6095 -1.6750 39 1 10.1382 -7.0156 -3.4595 40 1 4.1065 -1.1267 1.3438 41 1 3.1022 -2.5434 0.9332 42 1 3.3609 -2.0347 5.8549 43 1 1.8993 -2.4152 6.7973 44 1 2.3552 -3.4350 5.4119 45 1 0.9003 0.5351 4.7583 46 1 1.0495 -0.0962 6.4156 47 1 2.5110 0.2843 5.4731 48 1 0.0950 -3.0826 4.4088 49 1 -0.3608 -2.0628 5.7943 50 1 -0.5106 -1.4311 4.1368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734410626.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:11 Heat of formation + Delta-G solvation = -94.588760 kcal Electronic energy + Delta-G solvation = -30316.079771 eV Core-core repulsion = 26150.901403 eV Total energy + Delta-G solvation = -4165.178368 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.39394 -39.62440 -38.56731 -37.91849 -36.18110 -34.91129 -33.87756 -32.15758 -31.69055 -30.21301 -27.81932 -27.69447 -26.67881 -26.43806 -25.55733 -23.88587 -22.73328 -21.25413 -20.40233 -19.41387 -18.75321 -18.40541 -17.43116 -17.08300 -16.42422 -16.11916 -15.80309 -15.41489 -15.15944 -14.81620 -14.65294 -14.51972 -14.18342 -14.01387 -13.85742 -13.46612 -13.36804 -13.04812 -12.87526 -12.74943 -12.63224 -12.56739 -12.52014 -12.41080 -12.28989 -12.17486 -11.99081 -11.84640 -11.70211 -11.53006 -11.36609 -11.24668 -11.17476 -11.05836 -10.82471 -10.60847 -9.98972 -9.59205 -9.46310 -9.06758 -8.63957 -8.26551 -8.18990 -6.32522 -3.84100 0.68964 2.24890 2.66911 3.01511 3.05830 3.14191 3.50897 3.71391 3.96243 4.09057 4.14250 4.28303 4.39360 4.46318 4.47945 4.74602 4.86214 4.87826 4.89280 4.99539 5.10598 5.19592 5.19999 5.24638 5.36378 5.40441 5.43339 5.44775 5.46135 5.49044 5.56055 5.57727 5.66019 5.74695 5.76598 5.78025 5.82121 5.87430 5.88241 5.95540 5.97220 6.18410 6.58645 6.95854 7.04592 7.42498 7.56064 7.60722 8.12547 8.57629 8.93205 9.40549 9.80063 10.80524 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.002532 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.372016 B =11055.902583 C =12359.838139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 H 0.082 0.918 4 C -0.117 4.117 5 C 0.076 3.924 6 H 0.097 0.903 7 N -0.651 5.651 8 C 0.044 3.956 9 C 0.449 3.551 10 O -0.565 6.565 11 N -0.589 5.589 12 C -0.305 4.305 13 H 0.120 0.880 14 C 0.042 3.958 15 N -0.881 5.881 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.071 3.929 21 N -0.586 5.586 22 C 0.491 3.509 23 O -0.507 6.507 24 C 0.356 3.644 25 O -0.410 6.410 26 C -0.093 4.093 27 C -0.137 4.137 28 C -0.143 4.143 29 C -0.143 4.143 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.354 0.646 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.371 0.629 39 H 0.274 0.726 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.070 0.930 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.292 17.297 17.096 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.027 3.973 3 H 0.100 0.900 4 C -0.156 4.156 5 C -0.036 4.036 6 H 0.115 0.885 7 N -0.283 5.283 8 C -0.088 4.088 9 C 0.235 3.765 10 O -0.447 6.447 11 N -0.229 5.229 12 C -0.434 4.434 13 H 0.137 0.863 14 C -0.161 4.161 15 N -0.521 5.521 16 Si 0.706 3.294 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.195 1.195 20 C -0.054 4.054 21 N -0.322 5.322 22 C 0.277 3.723 23 O -0.384 6.384 24 C 0.225 3.775 25 O -0.278 6.278 26 C -0.094 4.094 27 C -0.194 4.194 28 C -0.200 4.200 29 C -0.201 4.201 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.176 0.824 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.089 0.911 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.653 16.909 16.095 28.107 hybrid contribution 1.517 0.406 1.480 2.158 sum -14.136 17.316 17.575 28.435 Atomic orbital electron populations 1.22176 0.93376 1.02948 1.03776 1.22144 0.95702 0.95678 0.83821 0.90030 1.22956 0.95404 1.00824 0.96408 1.22792 0.97436 0.94625 0.88761 0.88514 1.60178 1.05044 1.04571 1.58467 1.21794 0.89122 0.98850 0.99070 1.19655 0.83119 0.87827 0.85906 1.90572 1.50820 1.54062 1.49215 1.42199 1.06221 1.23718 1.50728 1.19430 0.94173 0.99034 1.30764 0.86264 1.25042 0.97103 0.96563 0.97432 1.69618 1.17584 1.23119 1.41730 0.86671 0.82138 0.80399 0.80187 1.19632 1.20156 1.19458 1.23211 0.87002 0.97407 0.97797 1.48598 1.27787 1.46863 1.08925 1.20640 0.85212 0.83595 0.82886 1.90647 1.24080 1.42394 1.81298 1.24968 0.83767 0.77996 0.90775 1.90449 1.21269 1.32530 1.83536 1.20944 0.97898 0.98962 0.91623 1.21794 0.99632 0.99455 0.98553 1.21901 1.02572 0.93417 1.02098 1.21908 0.93277 1.01296 1.03588 0.89534 0.91608 0.92483 0.89632 0.88990 0.82449 0.89200 0.93403 0.79670 0.91586 0.90609 0.90336 0.91943 0.91402 0.91840 0.90197 0.91146 0.92604 0.92489 0.91146 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 8.71 37.16 0.32 -1.16 16 2 C 0.13 1.18 3.77 -66.41 -0.25 0.93 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -1.10 6.20 -24.44 -0.15 -1.26 16 5 C 0.08 0.81 3.25 -65.75 -0.21 0.60 16 6 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 7 N -0.65 -9.38 5.99 -105.92 -0.63 -10.01 16 8 C 0.04 0.70 6.02 -4.97 -0.03 0.67 16 9 C 0.45 10.00 7.82 -10.98 -0.09 9.92 16 10 O -0.56 -14.97 15.78 5.55 0.09 -14.88 16 11 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 12 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 13 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 14 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 15 N -0.88 -25.68 13.96 55.50 0.77 -24.91 16 16 Si 0.88 19.27 27.74 -169.99 -4.71 14.55 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 19 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 20 C 0.07 0.77 5.14 -3.07 -0.02 0.76 16 21 N -0.59 -6.24 3.24 -163.69 -0.53 -6.77 16 22 C 0.49 5.47 7.36 -11.75 -0.09 5.38 16 23 O -0.51 -5.95 11.04 5.48 0.06 -5.89 16 24 C 0.36 3.79 6.00 -29.80 -0.18 3.61 16 25 O -0.41 -5.10 13.73 5.98 0.08 -5.02 16 26 C -0.09 -0.78 0.76 -155.66 -0.12 -0.89 16 27 C -0.14 -1.06 7.76 37.16 0.29 -0.78 16 28 C -0.14 -1.04 8.29 37.16 0.31 -0.73 16 29 C -0.14 -1.09 8.29 37.16 0.31 -0.78 16 30 H 0.09 0.89 5.89 -51.93 -0.31 0.59 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.89 8.06 -51.93 -0.42 0.47 16 34 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.35 5.45 7.86 -39.29 -0.31 5.15 16 36 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 37 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 38 H 0.37 7.64 5.76 -40.82 -0.24 7.41 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 41 H 0.08 0.96 7.00 -51.93 -0.36 0.60 16 42 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 45 H 0.08 0.67 6.43 -51.93 -0.33 0.33 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 49 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 0.69 6.43 -51.93 -0.33 0.36 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -32.83 396.73 -7.26 -40.08 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -8.15 Total: 12.26 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.15 Total: 8.55 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.45 Total: -55.63 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: 0.23 Total: -25.79 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.71 Total: 14.55 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.83 -7.26 -40.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734410626.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.504 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds