Wall clock time and date at job start Tue Mar 31 2020 23:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.89303 * 2 1 4 4 C 1.54385 * 109.82826 * 239.06849 * 2 1 3 5 5 C 1.55308 * 102.25215 * 219.12560 * 4 2 1 6 6 H 1.08998 * 111.12979 * 276.17462 * 5 4 2 7 7 C 1.50698 * 111.12239 * 152.05283 * 5 4 2 8 8 O 1.21284 * 120.00420 * 359.72776 * 7 5 4 9 9 N 1.34782 * 119.99892 * 180.02562 * 7 5 4 10 10 C 1.46501 * 120.00054 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.46967 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47164 * 179.97438 * 11 10 9 13 13 C 1.46896 * 111.00219 * 190.00395 * 12 11 10 14 14 C 1.50697 * 109.47193 * 162.31407 * 13 12 11 15 15 O 1.21291 * 120.00258 * 1.33254 * 14 13 12 16 16 N 1.34775 * 120.00252 * 181.32794 * 14 13 12 17 17 C 1.37098 * 120.00214 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00039 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99702 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00412 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99688 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46859 * 59.99550 * 21 19 17 23 23 H 1.48501 * 109.46982 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47039 * 299.99623 * 21 19 17 25 25 C 1.46906 * 110.99978 * 66.04668 * 12 11 10 26 26 C 1.52996 * 117.49670 * 127.74014 * 25 12 11 27 27 C 1.53005 * 117.49363 * 59.08060 * 25 12 11 28 28 C 1.54946 * 100.93924 * 34.13693 * 5 4 2 29 29 O 1.43238 * 109.83319 * 120.93698 * 2 1 3 30 30 H 1.09005 * 109.47109 * 180.93398 * 1 2 3 31 31 H 1.08999 * 109.47480 * 300.92781 * 1 2 3 32 32 H 1.08998 * 109.47815 * 60.93268 * 1 2 3 33 33 H 1.09004 * 110.84745 * 100.94013 * 4 2 1 34 34 H 1.08994 * 110.85237 * 337.31970 * 4 2 1 35 35 H 0.96998 * 119.99841 * 359.97438 * 9 7 5 36 36 H 1.08995 * 109.47061 * 299.99802 * 10 9 7 37 37 H 1.09003 * 109.46856 * 60.00019 * 10 9 7 38 38 H 1.08995 * 109.47452 * 300.00033 * 11 10 9 39 39 H 1.09004 * 109.46683 * 60.00046 * 11 10 9 40 40 H 1.09003 * 109.46991 * 282.31014 * 13 12 11 41 41 H 1.08997 * 109.47184 * 42.31587 * 13 12 11 42 42 H 0.97001 * 119.99693 * 0.02562 * 16 14 13 43 43 H 0.96993 * 120.00470 * 180.02562 * 20 19 17 44 44 H 1.08994 * 115.55330 * 273.41391 * 25 12 11 45 45 H 1.09004 * 117.50105 * 0.02562 * 26 25 12 46 46 H 1.09002 * 117.49750 * 145.02512 * 26 25 12 47 47 H 1.09000 * 117.49607 * 214.97656 * 27 25 12 48 48 H 1.08995 * 117.49772 * 359.97438 * 27 25 12 49 49 H 1.08999 * 110.31404 * 82.47095 * 28 5 4 50 50 H 1.09005 * 110.30972 * 204.64126 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9008 1.0249 0.0000 4 6 2.0536 -0.7465 -1.2458 5 6 3.2730 -1.5221 -0.6769 6 1 4.1622 -0.8922 -0.6514 7 6 3.5276 -2.7840 -1.4604 8 8 2.8116 -3.0718 -2.3960 9 7 4.5474 -3.5958 -1.1176 10 6 4.7953 -4.8222 -1.8796 11 6 6.0014 -5.5549 -1.2885 12 7 6.2496 -6.7850 -2.0521 13 6 7.2424 -7.6320 -1.3778 14 6 7.1594 -9.0345 -1.9229 15 8 6.3692 -9.2966 -2.8050 16 7 7.9632 -9.9977 -1.4304 17 6 7.8880 -11.2735 -1.9267 18 1 7.1845 -11.5068 -2.7120 19 6 8.7165 -12.2665 -1.4184 20 7 9.5723 -11.9828 -0.4624 21 14 8.6136 -14.0050 -2.0941 22 1 8.9206 -13.9903 -3.5471 23 1 9.5951 -14.8687 -1.3899 24 1 7.2436 -14.5378 -1.8830 25 6 6.6674 -6.4763 -3.4263 26 6 7.9539 -7.1282 -3.9368 27 6 7.9313 -5.6333 -3.6078 28 6 2.7747 -1.8445 0.7544 29 8 2.0159 -0.6927 1.1557 30 1 -0.3633 -1.0276 0.0168 31 1 -0.3634 0.5282 0.8815 32 1 -0.3635 0.4992 -0.8982 33 1 2.3671 -0.0425 -2.0166 34 1 1.3012 -1.4349 -1.6304 35 1 5.1177 -3.3677 -0.3669 36 1 3.9173 -5.4660 -1.8276 37 1 4.9988 -4.5686 -2.9200 38 1 6.8792 -4.9110 -1.3408 39 1 5.7982 -5.8084 -0.2480 40 1 8.2410 -7.2322 -1.5543 41 1 7.0406 -7.6460 -0.3068 42 1 8.5949 -9.7882 -0.7247 43 1 10.1508 -12.6759 -0.1079 44 1 5.8584 -6.3310 -4.1422 45 1 8.4902 -7.7864 -3.2532 46 1 7.9915 -7.4114 -4.9887 47 1 7.9539 -4.9338 -4.4435 48 1 8.4525 -5.3075 -2.7077 49 1 2.1401 -2.7306 0.7436 50 1 3.6210 -1.9924 1.4253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753155851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:50 Heat of formation + Delta-G solvation = -78.917657 kcal Electronic energy + Delta-G solvation = -29385.686116 eV Core-core repulsion = 25221.187298 eV Total energy + Delta-G solvation = -4164.498818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.75282 -39.63910 -38.90944 -37.32404 -35.39139 -33.87747 -33.30812 -32.77389 -32.12186 -31.21294 -29.45299 -26.76924 -26.27627 -24.36259 -23.95237 -22.79034 -21.91258 -21.48979 -20.55612 -19.95401 -18.83056 -17.84162 -17.77976 -17.20173 -16.93926 -16.31032 -15.90941 -15.74991 -15.49568 -15.02968 -14.57098 -14.39459 -14.33628 -14.19368 -13.95814 -13.66458 -13.45332 -13.37717 -12.99741 -12.90279 -12.64391 -12.34595 -12.27235 -11.99662 -11.68147 -11.55614 -11.50531 -11.42526 -11.26102 -11.22781 -11.01440 -10.98417 -10.46939 -10.43751 -10.20651 -10.16449 -9.99025 -9.90887 -9.45614 -9.29691 -8.50185 -7.95653 -7.91467 -6.40425 -3.80996 2.29248 2.72141 3.20701 3.26263 3.30584 3.36147 3.83247 3.87158 3.96507 4.04929 4.22874 4.33461 4.36199 4.60044 4.63735 4.70978 4.75312 4.92521 4.97278 5.08488 5.11028 5.13267 5.16802 5.17186 5.23349 5.26506 5.26913 5.37691 5.40987 5.54705 5.63873 5.69216 5.73264 5.78688 5.83582 5.84364 5.92854 6.09760 6.20887 6.25263 6.28608 6.44822 6.54238 7.07786 7.19386 7.22032 7.56268 7.91173 8.07118 8.63680 9.20092 9.55719 10.08451 10.77387 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.001819 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.175598 B =15390.777378 C =15860.494702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.075 3.925 3 H 0.083 0.917 4 C -0.133 4.133 5 C -0.149 4.149 6 H 0.112 0.888 7 C 0.524 3.476 8 O -0.531 6.531 9 N -0.726 5.726 10 C 0.124 3.876 11 C 0.047 3.953 12 N -0.480 5.480 13 C 0.039 3.961 14 C 0.447 3.553 15 O -0.567 6.567 16 N -0.568 5.568 17 C -0.297 4.297 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.904 5.904 21 Si 0.929 3.071 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.042 3.958 26 C -0.166 4.166 27 C -0.228 4.228 28 C 0.066 3.934 29 O -0.375 6.375 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.400 0.600 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.041 0.959 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.390 0.610 43 H 0.271 0.729 44 H 0.122 0.878 45 H 0.104 0.896 46 H 0.096 0.904 47 H 0.092 0.908 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.721 24.639 2.996 25.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.017 3.983 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.171 4.171 6 H 0.131 0.869 7 C 0.309 3.691 8 O -0.407 6.407 9 N -0.378 5.378 10 C 0.000 4.000 11 C -0.082 4.082 12 N -0.202 5.202 13 C -0.092 4.092 14 C 0.232 3.768 15 O -0.449 6.449 16 N -0.206 5.206 17 C -0.426 4.426 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.545 5.545 21 Si 0.757 3.243 22 H -0.200 1.200 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.067 4.067 26 C -0.203 4.203 27 C -0.267 4.267 28 C -0.011 4.011 29 O -0.294 6.294 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.233 0.767 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.223 0.777 43 H 0.081 0.919 44 H 0.139 0.861 45 H 0.122 0.878 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.105 0.895 49 H 0.085 0.915 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.144 23.885 1.997 25.653 hybrid contribution 1.692 -0.359 0.362 1.767 sum -7.452 23.526 2.359 24.790 Atomic orbital electron populations 1.22144 0.94597 1.02927 1.02421 1.22794 0.94744 0.96290 0.84447 0.89949 1.23116 0.96708 0.99443 0.97778 1.23058 1.01423 0.95946 0.96663 0.86947 1.20089 0.80258 0.84306 0.84408 1.90740 1.46802 1.73936 1.29253 1.45951 1.32606 1.24227 1.35013 1.21295 0.98722 0.84389 0.95581 1.22250 0.96586 0.91258 0.98069 1.61452 1.44359 1.13924 1.00502 1.22013 0.94199 0.94211 0.98822 1.19586 0.84941 0.85719 0.86567 1.90544 1.39668 1.82061 1.32659 1.41848 1.34778 1.08519 1.35467 1.19628 1.19888 0.84254 1.18845 0.88002 1.25232 0.96011 1.00228 0.96474 1.69595 1.23020 1.34904 1.27017 0.85939 0.78048 0.81494 0.78859 1.19971 1.21038 1.19932 1.22616 0.90562 1.02147 0.91370 1.23258 1.00339 0.93890 1.02791 1.23480 1.04866 0.95155 1.03205 1.23285 0.95581 0.89685 0.92570 1.88455 1.70730 1.40100 1.30160 0.91972 0.91843 0.91304 0.89485 0.88674 0.76662 0.90178 0.91006 0.94091 0.90158 0.92764 0.89439 0.77658 0.91903 0.86077 0.87821 0.88592 0.88925 0.89476 0.91507 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.05 9.44 37.16 0.35 -0.70 16 2 C 0.07 0.52 4.16 -26.01 -0.11 0.42 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -0.98 5.71 -24.78 -0.14 -1.12 16 5 C -0.15 -1.05 3.49 -89.52 -0.31 -1.37 16 6 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 7 C 0.52 5.26 7.15 -10.98 -0.08 5.18 16 8 O -0.53 -7.62 15.70 5.55 0.09 -7.54 16 9 N -0.73 -6.16 5.56 -60.29 -0.33 -6.49 16 10 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 11 C 0.05 0.52 4.96 -3.83 -0.02 0.50 16 12 N -0.48 -7.45 4.34 -228.09 -0.99 -8.44 16 13 C 0.04 0.66 5.00 -4.98 -0.02 0.63 16 14 C 0.45 10.18 5.84 -10.99 -0.06 10.11 16 15 O -0.57 -14.95 14.79 5.55 0.08 -14.87 16 16 N -0.57 -14.03 5.29 -10.97 -0.06 -14.09 16 17 C -0.30 -8.15 9.68 -14.93 -0.14 -8.29 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.31 13.05 55.50 0.72 -23.58 16 21 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.04 0.64 4.55 -67.71 -0.31 0.33 16 26 C -0.17 -2.68 8.48 -26.69 -0.23 -2.91 16 27 C -0.23 -2.90 9.27 -26.69 -0.25 -3.14 16 28 C 0.07 0.47 7.25 38.18 0.28 0.74 16 29 O -0.38 -3.30 11.02 -35.23 -0.39 -3.69 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.09 0.87 7.06 -51.93 -0.37 0.50 16 35 H 0.40 2.16 8.47 -40.82 -0.35 1.82 16 36 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.89 7.30 -51.93 -0.38 0.51 16 38 H 0.04 0.40 6.87 -51.93 -0.36 0.04 16 39 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 40 H 0.05 0.84 5.99 -51.93 -0.31 0.53 16 41 H 0.09 1.32 7.77 -51.93 -0.40 0.91 16 42 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.12 1.86 8.03 -51.93 -0.42 1.44 16 45 H 0.10 1.92 4.91 -51.93 -0.26 1.66 16 46 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.09 1.04 7.15 -51.93 -0.37 0.67 16 49 H 0.07 0.53 8.02 -51.93 -0.42 0.11 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 400.96 15.07 6.04 6.04 Total: -1.00 -33.45 400.96 -9.12 -42.56 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -8.09 Total: 11.91 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: -1.17 Total: 2.22 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.66 Total: -52.61 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -0.22 Total: -26.10 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.45 -9.12 -42.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753155851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.354 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds