Wall clock time and date at job start Tue Mar 31 2020 23:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.89303 * 2 1 4 4 C 1.54385 * 109.82826 * 239.06849 * 2 1 3 5 5 C 1.55308 * 102.25215 * 219.12560 * 4 2 1 6 6 H 1.08998 * 111.12979 * 276.17462 * 5 4 2 7 7 C 1.50698 * 111.12239 * 152.05283 * 5 4 2 8 8 O 1.21284 * 120.00420 * 359.72776 * 7 5 4 9 9 N 1.34782 * 119.99892 * 180.02562 * 7 5 4 10 10 C 1.46501 * 120.00054 * 180.02562 * 9 7 5 11 11 C 1.53000 * 109.46967 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47164 * 179.97438 * 11 10 9 13 13 C 1.46896 * 111.00219 * 190.00395 * 12 11 10 14 14 C 1.50697 * 109.47193 * 162.31407 * 13 12 11 15 15 O 1.21291 * 120.00258 * 1.33254 * 14 13 12 16 16 N 1.34775 * 120.00252 * 181.32794 * 14 13 12 17 17 C 1.37098 * 120.00214 * 180.02562 * 16 14 13 18 18 H 1.07991 * 120.00039 * 359.97438 * 17 16 14 19 19 C 1.38955 * 119.99702 * 180.02562 * 17 16 14 20 20 N 1.31408 * 120.00412 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99688 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46859 * 59.99550 * 21 19 17 23 23 H 1.48501 * 109.46982 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47039 * 299.99623 * 21 19 17 25 25 C 1.46906 * 110.99978 * 66.04668 * 12 11 10 26 26 C 1.52996 * 117.49670 * 127.74014 * 25 12 11 27 27 C 1.53005 * 117.49363 * 59.08060 * 25 12 11 28 28 C 1.54946 * 100.93924 * 34.13693 * 5 4 2 29 29 O 1.43238 * 109.83319 * 120.93698 * 2 1 3 30 30 H 1.09005 * 109.47109 * 180.93398 * 1 2 3 31 31 H 1.08999 * 109.47480 * 300.92781 * 1 2 3 32 32 H 1.08998 * 109.47815 * 60.93268 * 1 2 3 33 33 H 1.09004 * 110.84745 * 100.94013 * 4 2 1 34 34 H 1.08994 * 110.85237 * 337.31970 * 4 2 1 35 35 H 0.96998 * 119.99841 * 359.97438 * 9 7 5 36 36 H 1.08995 * 109.47061 * 299.99802 * 10 9 7 37 37 H 1.09003 * 109.46856 * 60.00019 * 10 9 7 38 38 H 1.08995 * 109.47452 * 300.00033 * 11 10 9 39 39 H 1.09004 * 109.46683 * 60.00046 * 11 10 9 40 40 H 1.09003 * 109.46991 * 282.31014 * 13 12 11 41 41 H 1.08997 * 109.47184 * 42.31587 * 13 12 11 42 42 H 0.97001 * 119.99693 * 0.02562 * 16 14 13 43 43 H 0.96993 * 120.00470 * 180.02562 * 20 19 17 44 44 H 1.08994 * 115.55330 * 273.41391 * 25 12 11 45 45 H 1.09004 * 117.50105 * 0.02562 * 26 25 12 46 46 H 1.09002 * 117.49750 * 145.02512 * 26 25 12 47 47 H 1.09000 * 117.49607 * 214.97656 * 27 25 12 48 48 H 1.08995 * 117.49772 * 359.97438 * 27 25 12 49 49 H 1.08999 * 110.31404 * 82.47095 * 28 5 4 50 50 H 1.09005 * 110.30972 * 204.64126 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9008 1.0249 0.0000 4 6 2.0536 -0.7465 -1.2458 5 6 3.2730 -1.5221 -0.6769 6 1 4.1622 -0.8922 -0.6514 7 6 3.5276 -2.7840 -1.4604 8 8 2.8116 -3.0718 -2.3960 9 7 4.5474 -3.5958 -1.1176 10 6 4.7953 -4.8222 -1.8796 11 6 6.0014 -5.5549 -1.2885 12 7 6.2496 -6.7850 -2.0521 13 6 7.2424 -7.6320 -1.3778 14 6 7.1594 -9.0345 -1.9229 15 8 6.3692 -9.2966 -2.8050 16 7 7.9632 -9.9977 -1.4304 17 6 7.8880 -11.2735 -1.9267 18 1 7.1845 -11.5068 -2.7120 19 6 8.7165 -12.2665 -1.4184 20 7 9.5723 -11.9828 -0.4624 21 14 8.6136 -14.0050 -2.0941 22 1 8.9206 -13.9903 -3.5471 23 1 9.5951 -14.8687 -1.3899 24 1 7.2436 -14.5378 -1.8830 25 6 6.6674 -6.4763 -3.4263 26 6 7.9539 -7.1282 -3.9368 27 6 7.9313 -5.6333 -3.6078 28 6 2.7747 -1.8445 0.7544 29 8 2.0159 -0.6927 1.1557 30 1 -0.3633 -1.0276 0.0168 31 1 -0.3634 0.5282 0.8815 32 1 -0.3635 0.4992 -0.8982 33 1 2.3671 -0.0425 -2.0166 34 1 1.3012 -1.4349 -1.6304 35 1 5.1177 -3.3677 -0.3669 36 1 3.9173 -5.4660 -1.8276 37 1 4.9988 -4.5686 -2.9200 38 1 6.8792 -4.9110 -1.3408 39 1 5.7982 -5.8084 -0.2480 40 1 8.2410 -7.2322 -1.5543 41 1 7.0406 -7.6460 -0.3068 42 1 8.5949 -9.7882 -0.7247 43 1 10.1508 -12.6759 -0.1079 44 1 5.8584 -6.3310 -4.1422 45 1 8.4902 -7.7864 -3.2532 46 1 7.9915 -7.4114 -4.9887 47 1 7.9539 -4.9338 -4.4435 48 1 8.4525 -5.3075 -2.7077 49 1 2.1401 -2.7306 0.7436 50 1 3.6210 -1.9924 1.4253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753155851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:49 Heat of formation + Delta-G solvation = -104.983268 kcal Electronic energy + Delta-G solvation = -29386.816406 eV Core-core repulsion = 25221.187298 eV Total energy + Delta-G solvation = -4165.629107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.47587 -40.95559 -39.70635 -38.93990 -36.33059 -35.84772 -34.39131 -33.41868 -33.20639 -32.71904 -30.58499 -28.00616 -27.01834 -26.06854 -24.82941 -23.66952 -23.06407 -22.04029 -21.60129 -21.12472 -20.38768 -19.68355 -18.50838 -18.12756 -17.83256 -17.58389 -17.22321 -16.58597 -16.47163 -16.25973 -16.00026 -15.63921 -15.38598 -15.14792 -15.01353 -14.89391 -14.65083 -14.33719 -14.15828 -13.63828 -13.51238 -13.46765 -13.45765 -13.17562 -13.01614 -12.83545 -12.71951 -12.40633 -12.29763 -12.23319 -12.14755 -12.09337 -11.99898 -11.78191 -11.60229 -11.46064 -11.09422 -10.97304 -10.55468 -10.27478 -10.14855 -9.95297 -9.18003 -8.43167 -5.90719 1.40183 1.41669 1.51531 1.51916 1.91975 2.12421 2.31005 2.73038 2.88452 2.91416 3.23360 3.27866 3.41032 3.74220 3.75058 3.82453 3.95495 3.97702 4.02239 4.06552 4.14223 4.14383 4.19590 4.31002 4.39764 4.45560 4.51306 4.56211 4.69040 4.69834 4.72178 4.76691 4.88042 4.90487 4.96128 4.99137 4.99733 5.15194 5.16501 5.17726 5.30749 5.36474 5.43939 5.85221 6.00027 6.07794 6.13649 6.49611 6.65962 7.18299 7.19084 7.62511 8.20006 8.74038 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023208 B = 0.001819 C = 0.001765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.175598 B =15390.777378 C =15860.494702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.073 3.927 3 H 0.101 0.899 4 C -0.134 4.134 5 C -0.138 4.138 6 H 0.144 0.856 7 C 0.523 3.477 8 O -0.581 6.581 9 N -0.709 5.709 10 C 0.133 3.867 11 C 0.053 3.947 12 N -0.504 5.504 13 C 0.054 3.946 14 C 0.448 3.552 15 O -0.608 6.608 16 N -0.579 5.579 17 C -0.328 4.328 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.921 5.921 21 Si 0.988 3.012 22 H -0.274 1.274 23 H -0.271 1.271 24 H -0.274 1.274 25 C 0.031 3.969 26 C -0.196 4.196 27 C -0.183 4.183 28 C 0.065 3.935 29 O -0.392 6.392 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.419 0.581 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.395 0.605 43 H 0.276 0.724 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.113 0.887 48 H 0.106 0.894 49 H 0.051 0.949 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.477 26.862 4.351 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.016 3.984 3 H 0.119 0.881 4 C -0.172 4.172 5 C -0.160 4.160 6 H 0.162 0.838 7 C 0.310 3.690 8 O -0.461 6.461 9 N -0.362 5.362 10 C 0.009 3.991 11 C -0.074 4.074 12 N -0.228 5.228 13 C -0.077 4.077 14 C 0.235 3.765 15 O -0.493 6.493 16 N -0.217 5.217 17 C -0.457 4.457 18 H 0.094 0.906 19 C -0.212 4.212 20 N -0.562 5.562 21 Si 0.812 3.188 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.200 1.200 25 C -0.078 4.078 26 C -0.233 4.233 27 C -0.222 4.222 28 C -0.011 4.011 29 O -0.312 6.312 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.256 0.744 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.131 0.869 42 H 0.228 0.772 43 H 0.085 0.915 44 H 0.130 0.870 45 H 0.096 0.904 46 H 0.105 0.895 47 H 0.132 0.868 48 H 0.124 0.876 49 H 0.069 0.931 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.868 26.141 3.403 27.511 hybrid contribution 1.236 -1.010 -0.095 1.599 sum -6.632 25.131 3.307 26.201 Atomic orbital electron populations 1.22160 0.94648 1.02182 1.03171 1.22913 0.94845 0.96909 0.83688 0.88113 1.23107 0.96407 0.99349 0.98360 1.23058 1.02459 0.94549 0.95885 0.83836 1.20628 0.79583 0.84982 0.83839 1.90728 1.48535 1.75167 1.31624 1.45754 1.32468 1.22933 1.35051 1.21004 0.97713 0.84938 0.95471 1.22276 0.97218 0.89780 0.98100 1.61298 1.44239 1.16241 1.00974 1.21820 0.95789 0.90440 0.99697 1.20657 0.83003 0.87627 0.85218 1.90514 1.41087 1.83334 1.34363 1.41900 1.35601 1.08278 1.35956 1.19557 1.20560 0.86219 1.19411 0.90594 1.25943 0.95354 1.03382 0.96557 1.69651 1.23165 1.36035 1.27384 0.85060 0.78143 0.77298 0.78259 1.19920 1.19533 1.19959 1.22582 0.90685 1.03184 0.91347 1.23164 1.01810 0.96508 1.01834 1.23515 1.01646 0.92785 1.04278 1.23372 0.96001 0.88717 0.93056 1.88439 1.71107 1.40580 1.31103 0.93448 0.91610 0.90067 0.88213 0.91124 0.74366 0.93037 0.92250 0.91400 0.88408 0.90775 0.86912 0.77172 0.91458 0.87016 0.90364 0.89480 0.86845 0.87596 0.93110 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.01 9.44 71.98 0.68 -1.33 16 2 C 0.07 0.91 4.16 31.06 0.13 1.04 16 3 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.13 -1.82 5.71 31.86 0.18 -1.64 16 5 C -0.14 -1.64 3.49 -10.08 -0.04 -1.67 16 6 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 7 C 0.52 9.81 7.15 87.66 0.63 10.44 16 8 O -0.58 -16.87 15.70 -3.04 -0.05 -16.92 16 9 N -0.71 -10.40 5.56 -463.05 -2.57 -12.97 16 10 C 0.13 2.80 5.67 86.38 0.49 3.29 16 11 C 0.05 1.03 4.96 86.30 0.43 1.46 16 12 N -0.50 -15.00 4.34 -875.54 -3.80 -18.80 16 13 C 0.05 1.73 5.00 85.56 0.43 2.16 16 14 C 0.45 20.71 5.84 87.66 0.51 21.22 16 15 O -0.61 -33.25 14.79 -3.06 -0.05 -33.29 16 16 N -0.58 -29.15 5.29 -306.99 -1.62 -30.77 16 17 C -0.33 -18.52 9.68 84.04 0.81 -17.71 16 18 H 0.08 4.60 7.16 -2.92 -0.02 4.58 16 19 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 20 N -0.92 -49.37 13.05 21.66 0.28 -49.09 16 21 Si 0.99 43.21 29.55 68.60 2.03 45.24 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 25 C 0.03 0.92 4.55 44.91 0.20 1.12 16 26 C -0.20 -6.34 8.48 30.62 0.26 -6.08 16 27 C -0.18 -4.16 9.27 30.62 0.28 -3.88 16 28 C 0.07 0.79 7.25 72.65 0.53 1.32 16 29 O -0.39 -6.20 11.02 -148.98 -1.64 -7.84 16 30 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.32 7.06 -2.39 -0.02 1.31 16 35 H 0.42 2.93 8.47 -92.71 -0.79 2.14 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.42 7.30 -2.39 -0.02 1.40 16 38 H 0.07 0.99 6.87 -2.39 -0.02 0.98 16 39 H 0.10 1.58 7.84 -2.39 -0.02 1.56 16 40 H 0.07 2.13 5.99 -2.39 -0.01 2.11 16 41 H 0.11 3.08 7.77 -2.39 -0.02 3.06 16 42 H 0.39 18.82 7.90 -92.71 -0.73 18.09 16 43 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.11 3.48 8.03 -2.39 -0.02 3.46 16 45 H 0.08 2.94 4.91 -2.38 -0.01 2.92 16 46 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 47 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.11 2.05 7.15 -2.39 -0.02 2.03 16 49 H 0.05 0.77 8.02 -2.39 -0.02 0.75 16 50 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 Total: -1.00 -76.15 400.96 -1.98 -78.13 By element: Atomic # 1 Polarization: 37.35 SS G_CDS: -0.55 Total: 36.80 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 5.99 Total: 9.52 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -7.71 Total: -111.64 kcal Atomic # 8 Polarization: -56.32 SS G_CDS: -1.73 Total: -58.05 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -76.15 -1.98 -78.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753155851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.856 kcal (2) G-P(sol) polarization free energy of solvation -76.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds