Wall clock time and date at job start Tue Mar 31 2020 23:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.33171 * 2 1 4 4 C 1.54482 * 110.46532 * 237.68585 * 2 1 3 5 5 C 1.54503 * 104.06445 * 217.14396 * 4 2 1 6 6 H 1.08996 * 110.63253 * 118.70108 * 5 4 2 7 7 C 1.50701 * 110.51181 * 241.35713 * 5 4 2 8 8 O 1.21277 * 119.99771 * 356.09510 * 7 5 4 9 9 N 1.34773 * 120.00035 * 176.09459 * 7 5 4 10 10 C 1.46498 * 120.00092 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47335 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.46897 * 110.99844 * 170.00065 * 12 11 10 14 14 C 1.50708 * 109.47401 * 288.32618 * 13 12 11 15 15 O 1.21297 * 119.99306 * 354.34519 * 14 13 12 16 16 N 1.34772 * 120.00327 * 174.34411 * 14 13 12 17 17 C 1.37099 * 119.99907 * 179.72394 * 16 14 13 18 18 H 1.07999 * 119.99805 * 0.27920 * 17 16 14 19 19 C 1.38951 * 119.99631 * 180.27429 * 17 16 14 20 20 N 1.31407 * 120.00424 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99400 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47498 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47139 * 120.00362 * 21 19 17 24 24 H 1.48503 * 109.46703 * 239.99607 * 21 19 17 25 25 C 1.46895 * 111.00058 * 293.95541 * 12 11 10 26 26 C 1.53001 * 117.49843 * 243.03359 * 25 12 11 27 27 C 1.53002 * 117.49950 * 174.37278 * 25 12 11 28 28 C 1.54482 * 104.06200 * 0.02562 * 5 4 2 29 29 O 1.44422 * 104.80549 * 23.97669 * 28 5 4 30 30 H 1.08996 * 109.47206 * 299.20607 * 1 2 3 31 31 H 1.08997 * 109.47272 * 59.20307 * 1 2 3 32 32 H 1.09000 * 109.47463 * 179.20372 * 1 2 3 33 33 H 1.08998 * 110.51040 * 98.49516 * 4 2 1 34 34 H 1.09006 * 110.51099 * 335.78870 * 4 2 1 35 35 H 0.97003 * 120.00361 * 359.97438 * 9 7 5 36 36 H 1.09011 * 109.47239 * 60.00066 * 10 9 7 37 37 H 1.08995 * 109.47379 * 300.00317 * 10 9 7 38 38 H 1.08995 * 109.47072 * 60.00106 * 11 10 9 39 39 H 1.09004 * 109.46953 * 300.00326 * 11 10 9 40 40 H 1.08999 * 109.47342 * 168.32622 * 13 12 11 41 41 H 1.08997 * 109.47304 * 48.32646 * 13 12 11 42 42 H 0.96996 * 119.99589 * 359.97438 * 16 14 13 43 43 H 0.96999 * 120.00164 * 180.02562 * 20 19 17 44 44 H 1.09000 * 115.55388 * 28.69896 * 25 12 11 45 45 H 1.09007 * 117.49704 * 359.97438 * 26 25 12 46 46 H 1.09001 * 117.50256 * 145.02036 * 26 25 12 47 47 H 1.09000 * 117.49780 * 214.97833 * 27 25 12 48 48 H 1.08997 * 117.49698 * 359.97332 * 27 25 12 49 49 H 1.08989 * 110.37798 * 142.81228 * 28 5 4 50 50 H 1.09009 * 110.36640 * 265.03840 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7737 -1.2232 5 6 3.3207 -1.5032 -0.6837 6 1 3.2026 -2.5833 -0.7707 7 6 4.5555 -1.0476 -1.4176 8 8 4.4586 -0.2693 -2.3427 9 7 5.7676 -1.5049 -1.0459 10 6 6.9680 -1.0623 -1.7596 11 6 8.2015 -1.7245 -1.1425 12 7 9.4052 -1.2803 -1.8579 13 6 10.6227 -1.7029 -1.1528 14 6 10.7817 -0.8901 0.1063 15 8 10.0206 0.0257 0.3371 16 7 11.7696 -1.1808 0.9758 17 6 11.9177 -0.4378 2.1184 18 1 11.2400 0.3775 2.3240 19 6 12.9397 -0.7340 3.0120 20 7 13.7646 -1.7259 2.7617 21 14 13.1411 0.2779 4.5693 22 1 12.0929 1.3288 4.6158 23 1 13.0090 -0.6065 5.7549 24 1 14.4819 0.9162 4.5748 25 6 9.4037 -1.7671 -3.2438 26 6 10.5222 -2.7259 -3.6570 27 6 10.5252 -1.2817 -4.1644 28 6 3.3878 -1.0846 0.8018 29 8 2.0323 -0.7233 1.1451 30 1 -0.3633 0.5014 0.8970 31 1 -0.3633 0.5261 -0.8827 32 1 -0.3634 -1.0275 -0.0143 33 1 2.3450 -0.0834 -2.0207 34 1 1.3313 -1.4929 -1.5769 35 1 5.8452 -2.1270 -0.3057 36 1 7.0595 0.0210 -1.6800 37 1 6.8909 -1.3441 -2.8097 38 1 8.1103 -2.8078 -1.2219 39 1 8.2784 -1.4423 -0.0925 40 1 11.4881 -1.5478 -1.7971 41 1 10.5456 -2.7593 -0.8960 42 1 12.3779 -1.9134 0.7913 43 1 14.4778 -1.9328 3.3857 44 1 8.4198 -1.9208 -3.6871 45 1 11.2594 -2.9951 -2.9005 46 1 10.2742 -3.5101 -4.3724 47 1 10.2793 -1.1163 -5.2133 48 1 11.2639 -0.6007 -3.7417 49 1 3.7253 -1.9190 1.4164 50 1 4.0530 -0.2298 0.9254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753155854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:00 Heat of formation + Delta-G solvation = -82.661442 kcal Electronic energy + Delta-G solvation = -29601.222724 eV Core-core repulsion = 25436.561563 eV Total energy + Delta-G solvation = -4164.661160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.65301 -39.41883 -38.67469 -37.52324 -35.42768 -34.05880 -33.28280 -32.59856 -32.05030 -31.27717 -29.34172 -26.70399 -26.08722 -24.40297 -23.69976 -22.52810 -22.31083 -21.54782 -20.40445 -20.14227 -18.89903 -17.95739 -17.75478 -16.81386 -16.54465 -16.13123 -15.91120 -15.58449 -15.51626 -15.23998 -14.66681 -14.63777 -14.28967 -14.08646 -13.84106 -13.54973 -13.40172 -13.10685 -12.85940 -12.61761 -12.53235 -12.41424 -12.29741 -12.01670 -11.68372 -11.55326 -11.39589 -11.35983 -11.24076 -11.11980 -11.08774 -11.01482 -10.66797 -10.37054 -10.30006 -10.25736 -10.08505 -9.97495 -9.53461 -9.15000 -8.44693 -8.00554 -7.88080 -6.45283 -3.86146 2.43607 2.87658 3.13734 3.24900 3.31866 3.56078 3.75442 3.86106 4.00475 4.09027 4.20910 4.38439 4.53283 4.66964 4.77248 4.86726 4.89496 4.93100 4.93772 5.00868 5.08351 5.15587 5.20707 5.27275 5.29800 5.35352 5.42924 5.53491 5.56905 5.59891 5.67867 5.71148 5.71640 5.73783 5.82868 5.92043 5.97812 6.07691 6.11587 6.18349 6.22389 6.31438 6.50856 7.09779 7.24264 7.32905 7.52103 8.02572 8.03926 8.57700 9.14758 9.50374 10.01915 10.72428 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.002576 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.126957 B =10866.910817 C =13422.366509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.141 4.141 5 C -0.146 4.146 6 H 0.110 0.890 7 C 0.521 3.479 8 O -0.536 6.536 9 N -0.724 5.724 10 C 0.125 3.875 11 C 0.050 3.950 12 N -0.477 5.477 13 C 0.043 3.957 14 C 0.441 3.559 15 O -0.575 6.575 16 N -0.564 5.564 17 C -0.298 4.298 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.928 3.072 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.018 3.982 26 C -0.223 4.223 27 C -0.170 4.170 28 C 0.056 3.944 29 O -0.368 6.368 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.401 0.599 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.052 0.948 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.101 0.899 46 H 0.091 0.909 47 H 0.095 0.905 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.810 -5.373 -9.645 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.090 0.910 4 C -0.179 4.179 5 C -0.168 4.168 6 H 0.128 0.872 7 C 0.307 3.693 8 O -0.413 6.413 9 N -0.375 5.375 10 C 0.002 3.998 11 C -0.078 4.078 12 N -0.199 5.199 13 C -0.088 4.088 14 C 0.226 3.774 15 O -0.458 6.458 16 N -0.201 5.201 17 C -0.427 4.427 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.091 4.091 26 C -0.262 4.262 27 C -0.208 4.208 28 C -0.021 4.021 29 O -0.287 6.287 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.235 0.765 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.116 0.884 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.224 0.776 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.114 0.886 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.350 -3.764 -9.836 21.157 hybrid contribution 1.036 -1.264 0.819 1.828 sum -17.314 -5.029 -9.017 20.158 Atomic orbital electron populations 1.21796 0.92988 1.02884 1.02607 1.23069 0.95457 0.95816 0.84655 0.91034 1.23022 0.95156 1.00288 0.99400 1.22716 0.94151 1.03026 0.96860 0.87163 1.20252 0.84356 0.80797 0.83932 1.90689 1.86302 1.34614 1.29669 1.45922 1.06414 1.48511 1.36672 1.21342 0.82237 1.00950 0.95297 1.22232 0.88858 0.96281 1.00448 1.61229 1.01195 1.57993 0.99496 1.21995 0.93273 0.97431 0.96059 1.19747 0.84601 0.87652 0.85416 1.90533 1.45760 1.32577 1.76952 1.41877 1.27738 1.31206 1.19318 1.19736 1.13437 1.13048 0.96504 0.87858 1.25259 0.95810 0.97100 0.99779 1.69614 1.17863 1.28979 1.37831 0.85815 0.78322 0.79491 0.80817 1.19196 1.20763 1.20739 1.22774 0.94763 1.01267 0.90304 1.23632 1.04042 0.93743 1.04809 1.23071 1.02043 0.96663 0.99059 1.23359 0.85455 1.00916 0.92416 1.89154 1.26443 1.74597 1.38533 0.91761 0.91003 0.91783 0.88022 0.90092 0.76512 0.89974 0.91727 0.94759 0.88360 0.88814 0.92991 0.77553 0.91912 0.86391 0.88048 0.89033 0.88612 0.88270 0.88084 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.53 37.16 0.35 -0.69 16 2 C 0.07 0.63 3.92 -25.95 -0.10 0.52 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.14 -1.27 6.22 -25.16 -0.16 -1.43 16 5 C -0.15 -1.31 3.51 -90.20 -0.32 -1.63 16 6 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 7 C 0.52 6.20 7.04 -10.99 -0.08 6.12 16 8 O -0.54 -8.37 15.29 5.56 0.09 -8.29 16 9 N -0.72 -7.95 5.50 -60.29 -0.33 -8.28 16 10 C 0.13 1.66 5.66 -4.04 -0.02 1.64 16 11 C 0.05 0.71 4.71 -3.82 -0.02 0.69 16 12 N -0.48 -7.49 4.31 -228.08 -0.98 -8.47 16 13 C 0.04 0.74 4.10 -4.97 -0.02 0.72 16 14 C 0.44 9.99 7.30 -10.98 -0.08 9.91 16 15 O -0.57 -14.99 14.75 5.54 0.08 -14.91 16 16 N -0.56 -13.85 5.29 -10.96 -0.06 -13.90 16 17 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 18 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.07 13.05 55.50 0.72 -23.35 16 21 Si 0.93 20.75 29.55 -169.99 -5.02 15.72 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 C 0.02 0.23 5.81 -67.71 -0.39 -0.16 16 26 C -0.22 -2.49 9.54 -26.69 -0.25 -2.75 16 27 C -0.17 -2.02 9.96 -26.69 -0.27 -2.28 16 28 C 0.06 0.52 7.11 37.94 0.27 0.79 16 29 O -0.37 -4.01 11.34 -35.23 -0.40 -4.41 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 33 H 0.10 1.08 6.51 -51.93 -0.34 0.74 16 34 H 0.08 0.61 7.87 -51.93 -0.41 0.20 16 35 H 0.40 3.41 8.46 -40.82 -0.35 3.07 16 36 H 0.08 1.33 8.14 -51.92 -0.42 0.90 16 37 H 0.06 0.83 6.42 -51.93 -0.33 0.50 16 38 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 39 H 0.10 1.67 6.51 -51.93 -0.34 1.33 16 40 H 0.09 1.49 5.83 -51.93 -0.30 1.19 16 41 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 42 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.12 1.34 6.35 -51.93 -0.33 1.01 16 45 H 0.10 1.19 5.93 -51.92 -0.31 0.88 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 47 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.10 1.31 7.67 -51.93 -0.40 0.91 16 49 H 0.10 0.73 8.14 -51.94 -0.42 0.30 16 50 H 0.07 0.70 7.86 -51.92 -0.41 0.29 16 LS Contribution 402.00 15.07 6.06 6.06 Total: -1.00 -32.87 402.00 -9.15 -42.01 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: -7.98 Total: 14.12 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: -1.32 Total: 3.70 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.65 Total: -54.00 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.23 Total: -27.60 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.87 -9.15 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753155854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.647 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds