Wall clock time and date at job start Tue Mar 31 2020 23:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 110.33171 * 2 1 4 4 C 1.54482 * 110.46532 * 237.68585 * 2 1 3 5 5 C 1.54503 * 104.06445 * 217.14396 * 4 2 1 6 6 H 1.08996 * 110.63253 * 118.70108 * 5 4 2 7 7 C 1.50701 * 110.51181 * 241.35713 * 5 4 2 8 8 O 1.21277 * 119.99771 * 356.09510 * 7 5 4 9 9 N 1.34773 * 120.00035 * 176.09459 * 7 5 4 10 10 C 1.46498 * 120.00092 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47335 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47095 * 180.02562 * 11 10 9 13 13 C 1.46897 * 110.99844 * 170.00065 * 12 11 10 14 14 C 1.50708 * 109.47401 * 288.32618 * 13 12 11 15 15 O 1.21297 * 119.99306 * 354.34519 * 14 13 12 16 16 N 1.34772 * 120.00327 * 174.34411 * 14 13 12 17 17 C 1.37099 * 119.99907 * 179.72394 * 16 14 13 18 18 H 1.07999 * 119.99805 * 0.27920 * 17 16 14 19 19 C 1.38951 * 119.99631 * 180.27429 * 17 16 14 20 20 N 1.31407 * 120.00424 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99400 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47498 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47139 * 120.00362 * 21 19 17 24 24 H 1.48503 * 109.46703 * 239.99607 * 21 19 17 25 25 C 1.46895 * 111.00058 * 293.95541 * 12 11 10 26 26 C 1.53001 * 117.49843 * 243.03359 * 25 12 11 27 27 C 1.53002 * 117.49950 * 174.37278 * 25 12 11 28 28 C 1.54482 * 104.06200 * 0.02562 * 5 4 2 29 29 O 1.44422 * 104.80549 * 23.97669 * 28 5 4 30 30 H 1.08996 * 109.47206 * 299.20607 * 1 2 3 31 31 H 1.08997 * 109.47272 * 59.20307 * 1 2 3 32 32 H 1.09000 * 109.47463 * 179.20372 * 1 2 3 33 33 H 1.08998 * 110.51040 * 98.49516 * 4 2 1 34 34 H 1.09006 * 110.51099 * 335.78870 * 4 2 1 35 35 H 0.97003 * 120.00361 * 359.97438 * 9 7 5 36 36 H 1.09011 * 109.47239 * 60.00066 * 10 9 7 37 37 H 1.08995 * 109.47379 * 300.00317 * 10 9 7 38 38 H 1.08995 * 109.47072 * 60.00106 * 11 10 9 39 39 H 1.09004 * 109.46953 * 300.00326 * 11 10 9 40 40 H 1.08999 * 109.47342 * 168.32622 * 13 12 11 41 41 H 1.08997 * 109.47304 * 48.32646 * 13 12 11 42 42 H 0.96996 * 119.99589 * 359.97438 * 16 14 13 43 43 H 0.96999 * 120.00164 * 180.02562 * 20 19 17 44 44 H 1.09000 * 115.55388 * 28.69896 * 25 12 11 45 45 H 1.09007 * 117.49704 * 359.97438 * 26 25 12 46 46 H 1.09001 * 117.50256 * 145.02036 * 26 25 12 47 47 H 1.09000 * 117.49780 * 214.97833 * 27 25 12 48 48 H 1.08997 * 117.49698 * 359.97332 * 27 25 12 49 49 H 1.08989 * 110.37798 * 142.81228 * 28 5 4 50 50 H 1.09009 * 110.36640 * 265.03840 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0702 -0.7737 -1.2232 5 6 3.3207 -1.5032 -0.6837 6 1 3.2026 -2.5833 -0.7707 7 6 4.5555 -1.0476 -1.4176 8 8 4.4586 -0.2693 -2.3427 9 7 5.7676 -1.5049 -1.0459 10 6 6.9680 -1.0623 -1.7596 11 6 8.2015 -1.7245 -1.1425 12 7 9.4052 -1.2803 -1.8579 13 6 10.6227 -1.7029 -1.1528 14 6 10.7817 -0.8901 0.1063 15 8 10.0206 0.0257 0.3371 16 7 11.7696 -1.1808 0.9758 17 6 11.9177 -0.4378 2.1184 18 1 11.2400 0.3775 2.3240 19 6 12.9397 -0.7340 3.0120 20 7 13.7646 -1.7259 2.7617 21 14 13.1411 0.2779 4.5693 22 1 12.0929 1.3288 4.6158 23 1 13.0090 -0.6065 5.7549 24 1 14.4819 0.9162 4.5748 25 6 9.4037 -1.7671 -3.2438 26 6 10.5222 -2.7259 -3.6570 27 6 10.5252 -1.2817 -4.1644 28 6 3.3878 -1.0846 0.8018 29 8 2.0323 -0.7233 1.1451 30 1 -0.3633 0.5014 0.8970 31 1 -0.3633 0.5261 -0.8827 32 1 -0.3634 -1.0275 -0.0143 33 1 2.3450 -0.0834 -2.0207 34 1 1.3313 -1.4929 -1.5769 35 1 5.8452 -2.1270 -0.3057 36 1 7.0595 0.0210 -1.6800 37 1 6.8909 -1.3441 -2.8097 38 1 8.1103 -2.8078 -1.2219 39 1 8.2784 -1.4423 -0.0925 40 1 11.4881 -1.5478 -1.7971 41 1 10.5456 -2.7593 -0.8960 42 1 12.3779 -1.9134 0.7913 43 1 14.4778 -1.9328 3.3857 44 1 8.4198 -1.9208 -3.6871 45 1 11.2594 -2.9951 -2.9005 46 1 10.2742 -3.5101 -4.3724 47 1 10.2793 -1.1163 -5.2133 48 1 11.2639 -0.6007 -3.7417 49 1 3.7253 -1.9190 1.4164 50 1 4.0530 -0.2298 0.9254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753155854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:00 Heat of formation + Delta-G solvation = -107.722804 kcal Electronic energy + Delta-G solvation = -29602.309466 eV Core-core repulsion = 25436.561563 eV Total energy + Delta-G solvation = -4165.747902 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.54540 -40.74644 -39.64636 -39.06247 -36.48402 -35.95040 -34.45462 -33.40121 -33.26679 -32.78006 -30.58340 -28.04370 -26.91634 -26.11402 -24.64932 -23.52241 -23.22776 -22.32215 -21.73783 -21.13486 -20.43297 -19.73289 -18.76349 -18.21285 -17.50565 -17.04434 -16.96657 -16.67878 -16.50565 -16.49412 -16.17055 -15.87699 -15.61431 -15.53340 -15.29147 -14.56890 -14.45633 -14.24094 -14.08404 -13.64664 -13.54740 -13.47464 -13.31221 -13.11920 -12.98999 -12.95920 -12.56418 -12.41609 -12.38145 -12.35977 -12.25128 -12.12127 -11.85515 -11.81278 -11.71330 -11.48489 -11.22910 -10.97893 -10.86359 -10.27377 -10.18530 -9.99807 -9.06956 -8.46591 -5.94733 1.35840 1.41718 1.48275 1.55206 1.91044 2.05136 2.28181 2.65727 2.88276 2.99204 3.20246 3.34178 3.42614 3.68198 3.69026 3.76732 3.94974 3.96565 4.03185 4.09364 4.16076 4.17205 4.20550 4.28461 4.35320 4.42014 4.48024 4.51455 4.63258 4.67269 4.81319 4.81581 4.83567 4.91109 4.94096 4.96737 4.98580 5.07056 5.10158 5.25619 5.28242 5.32177 5.41570 5.77661 5.82864 6.05213 6.15645 6.42787 6.60895 7.11498 7.13777 7.56938 8.12876 8.70909 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009415 B = 0.002576 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2973.126957 B =10866.910817 C =13422.366509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.061 3.939 3 H 0.058 0.942 4 C -0.139 4.139 5 C -0.136 4.136 6 H 0.142 0.858 7 C 0.520 3.480 8 O -0.577 6.577 9 N -0.714 5.714 10 C 0.138 3.862 11 C 0.059 3.941 12 N -0.503 5.503 13 C 0.060 3.940 14 C 0.440 3.560 15 O -0.613 6.613 16 N -0.574 5.574 17 C -0.328 4.328 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.990 3.010 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.007 3.993 26 C -0.206 4.206 27 C -0.175 4.175 28 C 0.054 3.946 29 O -0.383 6.383 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.415 0.585 36 H 0.045 0.955 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.075 0.925 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.134 0.866 45 H 0.096 0.904 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.080 0.920 49 H 0.125 0.875 50 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.412 -7.445 -10.209 22.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.004 3.996 3 H 0.076 0.924 4 C -0.176 4.176 5 C -0.157 4.157 6 H 0.160 0.840 7 C 0.307 3.693 8 O -0.457 6.457 9 N -0.366 5.366 10 C 0.014 3.986 11 C -0.069 4.069 12 N -0.226 5.226 13 C -0.071 4.071 14 C 0.227 3.773 15 O -0.499 6.499 16 N -0.212 5.212 17 C -0.458 4.458 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.814 3.186 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.101 4.101 26 C -0.245 4.245 27 C -0.213 4.213 28 C -0.023 4.023 29 O -0.303 6.303 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.251 0.749 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.093 0.907 42 H 0.229 0.771 43 H 0.087 0.913 44 H 0.151 0.849 45 H 0.115 0.885 46 H 0.134 0.866 47 H 0.134 0.866 48 H 0.099 0.901 49 H 0.143 0.857 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.940 -5.877 -10.396 22.390 hybrid contribution 1.210 -0.578 0.945 1.640 sum -17.730 -6.454 -9.451 21.103 Atomic orbital electron populations 1.21797 0.91274 1.03572 1.03226 1.23182 0.96872 0.95120 0.84449 0.92387 1.23008 0.95655 1.00355 0.98623 1.22742 0.92336 1.04714 0.95958 0.84004 1.20789 0.85164 0.79919 0.83418 1.90675 1.86915 1.36419 1.31678 1.45834 1.05631 1.48409 1.36764 1.21058 0.82858 0.98668 0.96031 1.22091 0.88644 0.97802 0.98388 1.61125 1.00914 1.59463 1.01056 1.21801 0.94734 0.97249 0.93309 1.20776 0.82912 0.87188 0.86397 1.90508 1.46844 1.34421 1.78118 1.41929 1.28568 1.31360 1.19309 1.19643 1.14111 1.13613 0.98427 0.90456 1.25986 0.95076 0.97975 1.02168 1.69667 1.18035 1.29582 1.38800 0.84918 0.78163 0.78027 0.77529 1.19933 1.19510 1.19797 1.22859 0.96098 1.02739 0.88452 1.23666 1.02393 0.93767 1.04629 1.23136 1.01207 0.97089 0.99900 1.23443 0.84725 1.01098 0.93047 1.89143 1.26998 1.74736 1.39377 0.91931 0.89622 0.91030 0.89917 0.87978 0.74865 0.93657 0.90762 0.91918 0.91691 0.87517 0.90688 0.77064 0.91347 0.84867 0.88533 0.86632 0.86625 0.90137 0.85663 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.53 71.98 0.69 -1.18 16 2 C 0.06 1.10 3.92 31.10 0.12 1.23 16 3 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.14 -2.36 6.22 31.61 0.20 -2.17 16 5 C -0.14 -2.24 3.51 -10.52 -0.04 -2.28 16 6 H 0.14 1.48 8.14 -2.39 -0.02 1.46 16 7 C 0.52 12.16 7.04 87.66 0.62 12.78 16 8 O -0.58 -18.34 15.29 -3.02 -0.05 -18.39 16 9 N -0.71 -15.26 5.50 -463.06 -2.54 -17.81 16 10 C 0.14 3.67 5.66 86.38 0.49 4.15 16 11 C 0.06 1.63 4.71 86.30 0.41 2.04 16 12 N -0.50 -15.47 4.31 -875.52 -3.78 -19.25 16 13 C 0.06 1.99 4.10 85.56 0.35 2.34 16 14 C 0.44 20.38 7.30 87.66 0.64 21.02 16 15 O -0.61 -33.28 14.75 -3.08 -0.05 -33.33 16 16 N -0.57 -28.76 5.29 -306.97 -1.62 -30.39 16 17 C -0.33 -18.35 9.68 84.04 0.81 -17.54 16 18 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -48.87 13.05 21.66 0.28 -48.58 16 21 Si 0.99 42.61 29.55 68.60 2.03 44.64 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 25 C 0.01 0.17 5.81 44.92 0.26 0.43 16 26 C -0.21 -3.97 9.54 30.62 0.29 -3.68 16 27 C -0.18 -3.82 9.96 30.62 0.30 -3.51 16 28 C 0.05 0.95 7.11 72.49 0.52 1.47 16 29 O -0.38 -8.02 11.34 -148.98 -1.69 -9.71 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.08 1.77 6.51 -2.39 -0.02 1.76 16 34 H 0.10 1.30 7.87 -2.38 -0.02 1.28 16 35 H 0.41 6.52 8.46 -92.71 -0.78 5.74 16 36 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.07 1.84 6.42 -2.39 -0.02 1.82 16 38 H 0.06 1.38 8.12 -2.39 -0.02 1.36 16 39 H 0.06 2.26 6.51 -2.39 -0.02 2.24 16 40 H 0.11 3.28 5.83 -2.39 -0.01 3.27 16 41 H 0.08 2.16 7.87 -2.39 -0.02 2.14 16 42 H 0.40 18.80 7.90 -92.71 -0.73 18.07 16 43 H 0.28 13.77 8.31 -92.71 -0.77 13.00 16 44 H 0.13 2.68 6.35 -2.39 -0.02 2.67 16 45 H 0.10 1.99 5.93 -2.38 -0.01 1.97 16 46 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.08 2.07 7.67 -2.39 -0.02 2.05 16 49 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.05 1.04 7.86 -2.38 -0.02 1.02 16 Total: -1.00 -73.45 402.00 -1.84 -75.28 By element: Atomic # 1 Polarization: 43.15 SS G_CDS: -0.55 Total: 42.61 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: 6.12 Total: 14.92 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -7.66 Total: -116.02 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -1.78 Total: -61.43 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -73.45 -1.84 -75.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753155854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.440 kcal (2) G-P(sol) polarization free energy of solvation -73.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds