Wall clock time and date at job start Tue Mar 31 2020 23:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.52356 * 2 1 4 4 C 1.53037 * 109.50278 * 239.91570 * 2 1 3 5 5 C 1.53042 * 109.53985 * 178.68248 * 4 2 1 6 6 C 1.53190 * 109.30903 * 61.36508 * 5 4 2 7 7 N 1.46914 * 108.77950 * 305.36525 * 6 5 4 8 8 C 1.34780 * 120.63334 * 233.58796 * 7 6 5 9 9 O 1.21347 * 120.00065 * 187.08465 * 8 7 6 10 10 C 1.49450 * 119.99809 * 7.08460 * 8 7 6 11 11 O 1.21350 * 119.99907 * 6.39808 * 10 8 7 12 12 N 1.34780 * 120.00158 * 186.40205 * 10 8 7 13 13 C 1.46499 * 120.00118 * 179.97438 * 12 10 8 14 14 C 1.52993 * 109.47156 * 179.97438 * 13 12 10 15 15 O 1.42902 * 110.91824 * 67.44667 * 14 13 12 16 16 C 1.55157 * 111.00591 * 191.34966 * 14 13 12 17 17 C 1.54326 * 102.94520 * 153.57410 * 16 14 13 18 18 N 1.47294 * 107.30491 * 337.82033 * 17 16 14 19 19 C 1.36936 * 125.79425 * 178.92656 * 18 17 16 20 20 H 1.08002 * 120.00353 * 180.02562 * 19 18 17 21 21 C 1.38810 * 119.99748 * 359.97438 * 19 18 17 22 22 N 1.31623 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99850 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47321 * 60.00336 * 23 21 19 25 25 H 1.48504 * 109.47429 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47452 * 300.00237 * 23 21 19 27 27 C 1.47426 * 108.55646 * 358.92355 * 18 17 16 28 28 C 1.46928 * 118.74117 * 53.85886 * 7 6 5 29 29 H 1.09000 * 109.47338 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47867 * 300.08399 * 1 2 3 31 31 H 1.09001 * 109.47031 * 60.08792 * 1 2 3 32 32 H 1.09010 * 109.45847 * 58.66130 * 4 2 1 33 33 H 1.08995 * 109.45140 * 298.70115 * 4 2 1 34 34 H 1.08998 * 109.49394 * 301.41273 * 5 4 2 35 35 H 1.09003 * 109.52005 * 181.33544 * 5 4 2 36 36 H 1.09000 * 109.58334 * 185.57453 * 6 5 4 37 37 H 1.09002 * 109.69995 * 65.22608 * 6 5 4 38 38 H 0.96992 * 119.99629 * 359.97438 * 12 10 8 39 39 H 1.09007 * 109.47040 * 59.99646 * 13 12 10 40 40 H 1.09000 * 109.47126 * 300.00152 * 13 12 10 41 41 H 0.96696 * 113.99691 * 297.55454 * 15 14 13 42 42 H 1.08993 * 110.72248 * 271.94177 * 16 14 13 43 43 H 1.09007 * 110.71502 * 35.03723 * 16 14 13 44 44 H 1.08994 * 109.88234 * 97.22384 * 17 16 14 45 45 H 1.08995 * 109.88344 * 218.23677 * 17 16 14 46 46 H 0.97006 * 119.99924 * 179.97438 * 22 21 19 47 47 H 1.09007 * 110.36696 * 265.25980 * 27 18 17 48 48 H 1.09002 * 110.36672 * 143.05420 * 27 18 17 49 49 H 1.09003 * 109.58556 * 65.93079 * 28 7 6 50 50 H 1.09003 * 109.58916 * 186.35170 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0409 -0.7231 -1.2482 5 6 3.5709 -0.6950 -1.2658 6 6 4.1052 -1.4266 -0.0305 7 7 3.5045 -0.8290 1.1697 8 6 4.2809 -0.3862 2.1785 9 8 3.7737 -0.0138 3.2161 10 6 5.7666 -0.3539 2.0192 11 8 6.2675 -0.6150 0.9452 12 7 6.5501 -0.0348 3.0684 13 6 8.0064 -0.0037 2.9124 14 6 8.6537 0.3844 4.2432 15 8 8.4658 -0.6414 5.2202 16 6 10.1602 0.7052 4.0563 17 6 10.4533 1.6778 5.2181 18 7 9.1698 2.2770 5.6223 19 6 8.9914 3.1796 6.6364 20 1 8.0041 3.5598 6.8536 21 6 10.0794 3.6053 7.3860 22 7 11.2826 3.1417 7.1217 23 14 9.8360 4.8361 8.7699 24 1 8.9052 4.2693 9.7786 25 1 11.1440 5.1260 9.4105 26 1 9.2653 6.0922 8.2206 27 6 8.1074 1.7419 4.7514 28 6 2.0410 -0.7288 1.2521 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5151 0.8891 31 1 -0.3633 0.5125 -0.8908 32 1 1.6582 -0.2245 -2.1389 33 1 1.6968 -1.7572 -1.2350 34 1 3.9159 0.3389 -1.2540 35 1 3.9340 -1.1893 -2.1669 36 1 5.1895 -1.3245 0.0140 37 1 3.8396 -2.4823 -0.0852 38 1 6.1497 0.1742 3.9268 39 1 8.2747 0.7288 2.1510 40 1 8.3605 -0.9890 2.6093 41 1 7.5396 -0.8083 5.4420 42 1 10.7615 -0.1991 4.1494 43 1 10.3356 1.1859 3.0938 44 1 10.8881 1.1336 6.0564 45 1 11.1399 2.4563 4.8856 46 1 12.0430 3.4394 7.6454 47 1 7.9279 2.4162 3.9139 48 1 7.1898 1.5926 5.3205 49 1 1.6083 -1.7282 1.2986 50 1 1.7628 -0.1661 2.1433 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754758295.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:20 Heat of formation + Delta-G solvation = -78.857751 kcal Electronic energy + Delta-G solvation = -30498.480442 eV Core-core repulsion = 26333.984222 eV Total energy + Delta-G solvation = -4164.496220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.20837 -39.44125 -38.41374 -37.95192 -35.27549 -34.58937 -33.75754 -32.17760 -32.10742 -29.75527 -28.55366 -27.51043 -26.47153 -25.71455 -24.10601 -22.77948 -22.59297 -20.96802 -20.20134 -20.14416 -19.70909 -18.06595 -17.23612 -16.87799 -16.34538 -16.20927 -15.91540 -15.53668 -15.07338 -14.90853 -14.67758 -14.62067 -14.32879 -14.22581 -13.85247 -13.71338 -13.46988 -13.12622 -13.00920 -12.91169 -12.56888 -12.34147 -12.17111 -11.93609 -11.73884 -11.73255 -11.45168 -11.23297 -11.00522 -10.93276 -10.87172 -10.77653 -10.71146 -10.35549 -10.15900 -10.12368 -9.76350 -9.51326 -9.38152 -9.21660 -9.00936 -8.59306 -6.84188 -5.71497 -3.05096 1.21455 2.10867 3.00211 3.26750 3.41481 3.45533 3.46807 4.09333 4.33400 4.39719 4.45697 4.46772 4.50496 4.70999 4.77986 4.94191 5.03511 5.07525 5.15229 5.21022 5.28646 5.32207 5.36477 5.41888 5.49076 5.55697 5.60006 5.61427 5.71493 5.72292 5.76153 5.79395 5.89175 6.01536 6.04158 6.12916 6.30798 6.35329 6.39578 6.51646 6.56357 6.79152 7.05271 7.52231 7.54459 7.61983 7.80013 7.82666 7.96303 8.24428 9.20375 9.80482 10.45500 11.40407 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019444 B = 0.002333 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1439.680056 B =11999.649162 C =12891.522689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.130 4.130 6 C 0.047 3.953 7 N -0.581 5.581 8 C 0.508 3.492 9 O -0.519 6.519 10 C 0.511 3.489 11 O -0.513 6.513 12 N -0.689 5.689 13 C 0.100 3.900 14 C 0.101 3.899 15 O -0.537 6.537 16 C -0.126 4.126 17 C 0.181 3.819 18 N -0.597 5.597 19 C -0.230 4.230 20 H 0.077 0.923 21 C -0.007 4.007 22 N -0.921 5.921 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.114 3.886 28 C 0.112 3.888 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.159 0.841 37 H 0.062 0.938 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.366 0.634 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.253 0.747 47 H 0.027 0.973 48 H 0.040 0.960 49 H 0.072 0.928 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.379 -10.863 -17.626 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.094 0.906 4 C -0.155 4.155 5 C -0.169 4.169 6 C -0.074 4.074 7 N -0.315 5.315 8 C 0.290 3.710 9 O -0.395 6.395 10 C 0.292 3.708 11 O -0.391 6.391 12 N -0.341 5.341 13 C -0.024 4.024 14 C 0.058 3.942 15 O -0.341 6.341 16 C -0.165 4.165 17 C 0.056 3.944 18 N -0.324 5.324 19 C -0.359 4.359 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.568 5.568 23 Si 0.744 3.256 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.013 4.013 28 C -0.010 4.010 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.175 0.825 37 H 0.081 0.919 38 H 0.250 0.750 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.213 0.787 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.090 0.910 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.453 -10.740 -17.654 26.414 hybrid contribution -1.075 0.763 1.033 1.675 sum -17.528 -9.976 -16.621 26.135 Atomic orbital electron populations 1.21765 0.94193 1.02107 1.02230 1.21588 0.96047 1.00202 0.94789 0.90620 1.21642 0.95799 1.00665 0.97392 1.21850 0.95359 1.01671 0.97974 1.23279 1.05473 0.95966 0.82683 1.47938 1.06609 1.58607 1.18304 1.20083 0.87921 0.79025 0.83965 1.90780 1.74975 1.46919 1.26777 1.20104 0.87797 0.78251 0.84639 1.90300 1.74740 1.48708 1.25373 1.45886 1.07725 1.66866 1.13591 1.22286 0.77379 1.03289 0.99402 1.22719 0.97875 0.88299 0.85278 1.86625 1.30218 1.56393 1.60847 1.22913 0.91591 1.00875 1.01137 1.21185 0.88019 0.92764 0.92396 1.44382 1.01843 1.49820 1.36308 1.18986 0.93996 1.16038 1.06841 0.90512 1.24802 0.95429 1.00371 0.99703 1.69945 0.98213 1.46580 1.42043 0.86180 0.76694 0.80894 0.81856 1.21138 1.21573 1.21181 1.22154 0.93071 0.91767 0.94280 1.21910 0.78632 1.01193 0.99305 0.92431 0.92259 0.92199 0.91663 0.91793 0.91469 0.90581 0.82542 0.91925 0.74975 0.89629 0.89916 0.78732 0.90822 0.90843 0.93055 0.93685 0.93646 0.95550 0.94191 0.91005 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.20 37.16 0.34 -0.46 16 2 C -0.11 -0.76 2.89 -90.28 -0.26 -1.02 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.75 5.16 -26.69 -0.14 -0.89 16 5 C -0.13 -0.97 6.08 -26.61 -0.16 -1.13 16 6 C 0.05 0.42 6.27 -3.72 -0.02 0.39 16 7 N -0.58 -6.03 2.97 -173.01 -0.51 -6.54 16 8 C 0.51 6.40 7.74 -11.58 -0.09 6.31 16 9 O -0.52 -7.63 15.94 5.50 0.09 -7.54 16 10 C 0.51 6.51 7.78 -11.58 -0.09 6.42 16 11 O -0.51 -6.89 13.10 5.50 0.07 -6.82 16 12 N -0.69 -8.63 5.18 -60.73 -0.31 -8.94 16 13 C 0.10 1.33 4.97 -4.05 -0.02 1.31 16 14 C 0.10 1.67 0.95 -88.47 -0.08 1.58 16 15 O -0.54 -9.15 13.18 -35.23 -0.46 -9.61 16 16 C -0.13 -2.30 6.16 -24.90 -0.15 -2.45 16 17 C 0.18 4.38 5.38 -2.91 -0.02 4.37 16 18 N -0.60 -15.16 3.40 -169.85 -0.58 -15.74 16 19 C -0.23 -6.45 10.28 -15.06 -0.15 -6.60 16 20 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 21 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 22 N -0.92 -27.17 10.34 55.49 0.57 -26.60 16 23 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.11 2.26 5.73 -2.53 -0.01 2.25 16 28 C 0.11 0.96 5.72 -3.48 -0.02 0.94 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.16 1.68 3.78 -56.76 -0.21 1.46 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.41 5.08 6.80 -40.82 -0.28 4.80 16 39 H 0.09 1.14 8.00 -51.93 -0.42 0.72 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.37 4.91 8.58 45.56 0.39 5.30 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 44 H 0.05 1.41 7.39 -51.93 -0.38 1.02 16 45 H 0.05 1.19 7.52 -51.93 -0.39 0.80 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.03 0.52 8.04 -51.93 -0.42 0.11 16 48 H 0.04 0.76 7.80 -51.93 -0.40 0.36 16 49 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.09 0.92 7.05 -51.93 -0.37 0.56 16 LS Contribution 391.52 15.07 5.90 5.90 Total: -1.00 -32.65 391.52 -8.75 -41.40 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.51 Total: 6.51 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: -0.98 Total: 10.73 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.83 Total: -57.82 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.30 Total: -23.97 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.65 -8.75 -41.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754758295.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.458 kcal (2) G-P(sol) polarization free energy of solvation -32.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds