Wall clock time and date at job start Tue Mar 31 2020 23:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.52611 * 2 1 4 4 C 1.53047 * 109.49798 * 120.08219 * 2 1 3 5 5 C 1.53035 * 109.53927 * 181.31864 * 4 2 1 6 6 C 1.53624 * 109.23980 * 298.50648 * 5 4 2 7 7 N 1.46927 * 108.54325 * 54.86135 * 6 5 4 8 8 C 1.34773 * 120.63588 * 126.36262 * 7 6 5 9 9 O 1.21349 * 120.00668 * 174.16152 * 8 7 6 10 10 C 1.49453 * 119.99593 * 354.16805 * 8 7 6 11 11 O 1.21347 * 120.00288 * 353.76114 * 10 8 7 12 12 N 1.34781 * 119.99864 * 173.76123 * 10 8 7 13 13 C 1.46504 * 120.00040 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47045 * 179.97438 * 13 12 10 15 15 O 1.42898 * 110.88687 * 67.42902 * 14 13 12 16 16 C 1.55163 * 111.03781 * 191.33400 * 14 13 12 17 17 C 1.54326 * 103.02076 * 153.39530 * 16 14 13 18 18 N 1.47018 * 107.26844 * 338.14197 * 17 16 14 19 19 C 1.36938 * 125.64873 * 178.85433 * 18 17 16 20 20 H 1.07992 * 120.00338 * 174.75948 * 19 18 17 21 21 C 1.38814 * 119.99748 * 355.02589 * 19 18 17 22 22 N 1.31613 * 120.00418 * 4.09463 * 21 19 18 23 23 Si 1.86802 * 119.99926 * 184.09689 * 21 19 18 24 24 H 1.48490 * 109.47343 * 95.00160 * 23 21 19 25 25 H 1.48499 * 109.46959 * 215.00662 * 23 21 19 26 26 H 1.48505 * 109.46870 * 335.00217 * 23 21 19 27 27 C 1.47421 * 108.70198 * 358.58122 * 18 17 16 28 28 C 1.46927 * 118.73578 * 306.09120 * 7 6 5 29 29 H 1.08999 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47069 * 300.08247 * 1 2 3 31 31 H 1.08999 * 109.47018 * 60.08270 * 1 2 3 32 32 H 1.09001 * 109.45374 * 301.34087 * 4 2 1 33 33 H 1.09004 * 109.45826 * 61.30820 * 4 2 1 34 34 H 1.09001 * 109.50047 * 58.58772 * 5 4 2 35 35 H 1.09002 * 109.49996 * 178.65385 * 5 4 2 36 36 H 1.08995 * 109.74238 * 295.12154 * 6 5 4 37 37 H 1.09006 * 109.66339 * 174.55060 * 6 5 4 38 38 H 0.96993 * 120.00148 * 359.97438 * 12 10 8 39 39 H 1.09003 * 109.46736 * 60.00219 * 13 12 10 40 40 H 1.09000 * 109.46834 * 300.00226 * 13 12 10 41 41 H 0.96699 * 113.99779 * 297.56700 * 15 14 13 42 42 H 1.09002 * 110.71473 * 271.95806 * 16 14 13 43 43 H 1.08999 * 110.71738 * 35.04915 * 16 14 13 44 44 H 1.09001 * 109.99122 * 218.65766 * 17 16 14 45 45 H 1.09007 * 109.77958 * 97.49781 * 17 16 14 46 46 H 0.97002 * 120.00225 * 179.97438 * 22 21 19 47 47 H 1.09002 * 110.36424 * 143.19423 * 27 18 17 48 48 H 1.09000 * 110.37226 * 265.51770 * 27 18 17 49 49 H 1.09002 * 109.58689 * 173.64504 * 28 7 6 50 50 H 1.08997 * 109.58829 * 294.07331 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5708 -0.6950 1.2661 6 6 4.1050 -1.4319 0.0284 7 7 3.5047 -0.8292 -1.1695 8 6 4.2811 -0.3864 -2.1782 9 8 3.7727 0.0116 -3.2057 10 6 5.7684 -0.3857 -2.0313 11 8 6.2731 -0.6758 -0.9666 12 7 6.5491 -0.0630 -3.0815 13 6 8.0071 -0.0617 -2.9374 14 6 8.6506 0.3363 -4.2672 15 8 8.3658 1.7005 -4.5828 16 6 10.1804 0.0782 -4.2449 17 6 10.5177 -0.1415 -5.7347 18 7 9.2731 -0.5364 -6.4103 19 6 9.1404 -0.8024 -7.7470 20 1 8.2007 -1.1676 -8.1343 21 6 10.2153 -0.6078 -8.6035 22 7 11.3846 -0.2453 -8.1202 23 14 10.0024 -0.8605 -10.4420 24 1 9.7065 0.4425 -11.0898 25 1 11.2522 -1.4244 -11.0122 26 1 8.8790 -1.8008 -10.6856 27 6 8.1931 -0.6051 -5.4092 28 6 2.0414 -0.7238 -1.2495 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5125 -0.8907 32 1 1.6581 -0.2245 2.1389 33 1 1.6969 -1.7574 1.2352 34 1 3.9159 0.3388 1.2542 35 1 3.9334 -1.1893 2.1674 36 1 3.8338 -2.4862 0.0821 37 1 5.1896 -1.3333 -0.0174 38 1 6.1457 0.1685 -3.9327 39 1 8.3450 -1.0588 -2.6547 40 1 8.2953 0.6521 -2.1657 41 1 7.4249 1.8881 -4.7039 42 1 10.7118 0.9443 -3.8503 43 1 10.4127 -0.8132 -3.6623 44 1 11.2615 -0.9319 -5.8358 45 1 10.8967 0.7844 -6.1676 46 1 12.1359 -0.1097 -8.7187 47 1 7.2551 -0.2528 -5.8384 48 1 8.0828 -1.6245 -5.0394 49 1 1.7638 -0.1579 -2.1388 50 1 1.6053 -1.7216 -1.2980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754758298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:31 Heat of formation + Delta-G solvation = -78.688488 kcal Electronic energy + Delta-G solvation = -30482.959146 eV Core-core repulsion = 26318.470267 eV Total energy + Delta-G solvation = -4164.488880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.21167 -39.44692 -38.42264 -37.95288 -35.29391 -34.59325 -33.76049 -32.16813 -32.11295 -29.76155 -28.55436 -27.51954 -26.47119 -25.72091 -24.11298 -22.78354 -22.60367 -20.97641 -20.20765 -20.14306 -19.71463 -18.05311 -17.23066 -16.88727 -16.44692 -16.11453 -15.88718 -15.57137 -15.05940 -14.94677 -14.68170 -14.63179 -14.31934 -14.19210 -13.84610 -13.75072 -13.46596 -13.17800 -13.00243 -12.90177 -12.57070 -12.35401 -12.16254 -11.94894 -11.74438 -11.73571 -11.45943 -11.23929 -11.00424 -10.91799 -10.89489 -10.77544 -10.73123 -10.37952 -10.13521 -10.09843 -9.78242 -9.48485 -9.40915 -9.20506 -9.01174 -8.58679 -6.84400 -5.72740 -3.06215 1.21475 2.10700 3.00537 3.26715 3.40492 3.45527 3.47422 4.08901 4.32903 4.39268 4.46203 4.46363 4.49765 4.70057 4.77675 4.94325 5.03448 5.07526 5.14478 5.20728 5.28823 5.31850 5.35847 5.42285 5.49065 5.55433 5.59420 5.60832 5.70688 5.70975 5.75790 5.78337 5.89303 6.00577 6.03785 6.12565 6.31566 6.34859 6.39915 6.51511 6.55619 6.79275 7.05246 7.50059 7.54563 7.64546 7.80040 7.82951 7.97295 8.24538 9.19981 9.79995 10.44901 11.39013 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.002276 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.960092 B =12296.676802 C =13097.808225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.075 0.925 4 C -0.118 4.118 5 C -0.130 4.130 6 C 0.044 3.956 7 N -0.581 5.581 8 C 0.508 3.492 9 O -0.520 6.520 10 C 0.511 3.489 11 O -0.512 6.512 12 N -0.688 5.688 13 C 0.100 3.900 14 C 0.101 3.899 15 O -0.537 6.537 16 C -0.126 4.126 17 C 0.180 3.820 18 N -0.597 5.597 19 C -0.231 4.231 20 H 0.078 0.922 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.114 3.886 28 C 0.111 3.889 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.161 0.839 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.367 0.633 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.055 0.945 46 H 0.253 0.747 47 H 0.041 0.959 48 H 0.027 0.973 49 H 0.094 0.906 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.724 -0.688 20.559 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.155 4.155 5 C -0.168 4.168 6 C -0.076 4.076 7 N -0.314 5.314 8 C 0.290 3.710 9 O -0.395 6.395 10 C 0.292 3.708 11 O -0.391 6.391 12 N -0.340 5.340 13 C -0.024 4.024 14 C 0.059 3.941 15 O -0.341 6.341 16 C -0.165 4.165 17 C 0.055 3.945 18 N -0.324 5.324 19 C -0.359 4.359 20 H 0.095 0.905 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C -0.013 4.013 28 C -0.011 4.011 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.177 0.823 38 H 0.250 0.750 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.213 0.787 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.059 0.941 48 H 0.044 0.956 49 H 0.112 0.888 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.806 -0.630 20.569 26.569 hybrid contribution -1.046 -0.148 -1.303 1.677 sum -17.852 -0.778 19.266 26.277 Atomic orbital electron populations 1.21765 0.94170 1.02149 1.02204 1.21508 0.96058 1.00180 0.94843 0.90697 1.21646 0.95815 1.00704 0.97362 1.21926 0.95346 1.01540 0.98013 1.23438 1.05640 0.95952 0.82595 1.47942 1.06613 1.58418 1.18417 1.20073 0.87922 0.79156 0.83835 1.90777 1.74976 1.46386 1.27410 1.20102 0.87848 0.78295 0.84510 1.90278 1.74575 1.48228 1.26029 1.45887 1.07652 1.66529 1.13976 1.22290 0.77366 1.03299 0.99419 1.22714 0.97432 0.82905 0.91098 1.86625 1.29133 1.25461 1.92851 1.22911 0.91129 1.00931 1.01541 1.21168 0.88443 1.00069 0.84776 1.44330 1.03704 1.80810 1.03511 1.19037 0.97797 1.37697 0.81409 0.90459 1.24825 0.95770 1.01447 0.98186 1.69957 1.00483 1.52981 1.33154 0.86097 0.76916 0.77649 0.85077 1.21560 1.21724 1.20651 1.22165 0.93163 0.95870 0.90090 1.21820 0.78691 1.01278 0.99298 0.92400 0.92190 0.92280 0.91682 0.91759 0.91533 0.90606 0.91842 0.82345 0.74960 0.89616 0.89934 0.78694 0.90812 0.90906 0.94078 0.92636 0.93691 0.94118 0.95584 0.88777 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.20 37.16 0.34 -0.44 16 2 C -0.11 -0.74 2.87 -90.50 -0.26 -1.00 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -0.74 5.16 -26.69 -0.14 -0.88 16 5 C -0.13 -0.96 6.10 -26.39 -0.16 -1.12 16 6 C 0.04 0.40 6.31 -3.49 -0.02 0.38 16 7 N -0.58 -6.05 2.97 -173.01 -0.51 -6.56 16 8 C 0.51 6.41 7.75 -11.59 -0.09 6.32 16 9 O -0.52 -7.61 15.93 5.50 0.09 -7.52 16 10 C 0.51 6.51 7.78 -11.58 -0.09 6.42 16 11 O -0.51 -6.88 13.08 5.50 0.07 -6.81 16 12 N -0.69 -8.62 5.18 -60.73 -0.31 -8.94 16 13 C 0.10 1.33 4.97 -4.04 -0.02 1.31 16 14 C 0.10 1.67 0.95 -88.47 -0.08 1.59 16 15 O -0.54 -9.22 13.18 -35.23 -0.46 -9.69 16 16 C -0.13 -2.30 6.16 -24.89 -0.15 -2.45 16 17 C 0.18 4.36 5.39 -3.06 -0.02 4.34 16 18 N -0.60 -15.11 3.39 -170.07 -0.58 -15.69 16 19 C -0.23 -6.45 10.27 -15.06 -0.15 -6.61 16 20 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 22 N -0.92 -27.08 10.34 55.49 0.57 -26.51 16 23 Si 0.91 22.22 29.56 -169.99 -5.02 17.20 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.11 2.25 5.74 -2.53 -0.01 2.23 16 28 C 0.11 0.96 5.70 -3.71 -0.02 0.94 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.16 1.71 3.74 -56.92 -0.21 1.50 16 38 H 0.41 5.08 6.80 -40.82 -0.28 4.81 16 39 H 0.09 1.12 8.00 -51.93 -0.42 0.71 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.37 4.99 8.57 45.56 0.39 5.38 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.16 7.94 -51.93 -0.41 0.75 16 44 H 0.04 1.08 7.67 -51.93 -0.40 0.68 16 45 H 0.06 1.53 7.22 -51.92 -0.37 1.15 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.04 0.77 7.80 -51.93 -0.41 0.37 16 48 H 0.03 0.51 8.04 -51.93 -0.42 0.09 16 49 H 0.09 0.92 7.04 -51.93 -0.37 0.55 16 50 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 391.44 15.07 5.90 5.90 Total: -1.00 -32.58 391.44 -8.75 -41.32 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.51 Total: 6.53 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: -0.98 Total: 10.77 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -0.83 Total: -57.70 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.30 Total: -24.02 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.58 -8.75 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754758298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.364 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds