Wall clock time and date at job start Tue Mar 31 2020 23:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.52611 * 2 1 4 4 C 1.53047 * 109.49798 * 120.08219 * 2 1 3 5 5 C 1.53035 * 109.53927 * 181.31864 * 4 2 1 6 6 C 1.53624 * 109.23980 * 298.50648 * 5 4 2 7 7 N 1.46927 * 108.54325 * 54.86135 * 6 5 4 8 8 C 1.34773 * 120.63588 * 126.36262 * 7 6 5 9 9 O 1.21349 * 120.00668 * 174.16152 * 8 7 6 10 10 C 1.49453 * 119.99593 * 354.16805 * 8 7 6 11 11 O 1.21347 * 120.00288 * 353.76114 * 10 8 7 12 12 N 1.34781 * 119.99864 * 173.76123 * 10 8 7 13 13 C 1.46504 * 120.00040 * 179.97438 * 12 10 8 14 14 C 1.52994 * 109.47045 * 179.97438 * 13 12 10 15 15 O 1.42898 * 110.88687 * 67.42902 * 14 13 12 16 16 C 1.55163 * 111.03781 * 191.33400 * 14 13 12 17 17 C 1.54326 * 103.02076 * 153.39530 * 16 14 13 18 18 N 1.47018 * 107.26844 * 338.14197 * 17 16 14 19 19 C 1.36938 * 125.64873 * 178.85433 * 18 17 16 20 20 H 1.07992 * 120.00338 * 174.75948 * 19 18 17 21 21 C 1.38814 * 119.99748 * 355.02589 * 19 18 17 22 22 N 1.31613 * 120.00418 * 4.09463 * 21 19 18 23 23 Si 1.86802 * 119.99926 * 184.09689 * 21 19 18 24 24 H 1.48490 * 109.47343 * 95.00160 * 23 21 19 25 25 H 1.48499 * 109.46959 * 215.00662 * 23 21 19 26 26 H 1.48505 * 109.46870 * 335.00217 * 23 21 19 27 27 C 1.47421 * 108.70198 * 358.58122 * 18 17 16 28 28 C 1.46927 * 118.73578 * 306.09120 * 7 6 5 29 29 H 1.08999 * 109.47422 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47069 * 300.08247 * 1 2 3 31 31 H 1.08999 * 109.47018 * 60.08270 * 1 2 3 32 32 H 1.09001 * 109.45374 * 301.34087 * 4 2 1 33 33 H 1.09004 * 109.45826 * 61.30820 * 4 2 1 34 34 H 1.09001 * 109.50047 * 58.58772 * 5 4 2 35 35 H 1.09002 * 109.49996 * 178.65385 * 5 4 2 36 36 H 1.08995 * 109.74238 * 295.12154 * 6 5 4 37 37 H 1.09006 * 109.66339 * 174.55060 * 6 5 4 38 38 H 0.96993 * 120.00148 * 359.97438 * 12 10 8 39 39 H 1.09003 * 109.46736 * 60.00219 * 13 12 10 40 40 H 1.09000 * 109.46834 * 300.00226 * 13 12 10 41 41 H 0.96699 * 113.99779 * 297.56700 * 15 14 13 42 42 H 1.09002 * 110.71473 * 271.95806 * 16 14 13 43 43 H 1.08999 * 110.71738 * 35.04915 * 16 14 13 44 44 H 1.09001 * 109.99122 * 218.65766 * 17 16 14 45 45 H 1.09007 * 109.77958 * 97.49781 * 17 16 14 46 46 H 0.97002 * 120.00225 * 179.97438 * 22 21 19 47 47 H 1.09002 * 110.36424 * 143.19423 * 27 18 17 48 48 H 1.09000 * 110.37226 * 265.51770 * 27 18 17 49 49 H 1.09002 * 109.58689 * 173.64504 * 28 7 6 50 50 H 1.08997 * 109.58829 * 294.07331 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 1.2484 5 6 3.5708 -0.6950 1.2661 6 6 4.1050 -1.4319 0.0284 7 7 3.5047 -0.8292 -1.1695 8 6 4.2811 -0.3864 -2.1782 9 8 3.7727 0.0116 -3.2057 10 6 5.7684 -0.3857 -2.0313 11 8 6.2731 -0.6758 -0.9666 12 7 6.5491 -0.0630 -3.0815 13 6 8.0071 -0.0617 -2.9374 14 6 8.6506 0.3363 -4.2672 15 8 8.3658 1.7005 -4.5828 16 6 10.1804 0.0782 -4.2449 17 6 10.5177 -0.1415 -5.7347 18 7 9.2731 -0.5364 -6.4103 19 6 9.1404 -0.8024 -7.7470 20 1 8.2007 -1.1676 -8.1343 21 6 10.2153 -0.6078 -8.6035 22 7 11.3846 -0.2453 -8.1202 23 14 10.0024 -0.8605 -10.4420 24 1 9.7065 0.4425 -11.0898 25 1 11.2522 -1.4244 -11.0122 26 1 8.8790 -1.8008 -10.6856 27 6 8.1931 -0.6051 -5.4092 28 6 2.0414 -0.7238 -1.2495 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5151 0.8892 31 1 -0.3633 0.5125 -0.8907 32 1 1.6581 -0.2245 2.1389 33 1 1.6969 -1.7574 1.2352 34 1 3.9159 0.3388 1.2542 35 1 3.9334 -1.1893 2.1674 36 1 3.8338 -2.4862 0.0821 37 1 5.1896 -1.3333 -0.0174 38 1 6.1457 0.1685 -3.9327 39 1 8.3450 -1.0588 -2.6547 40 1 8.2953 0.6521 -2.1657 41 1 7.4249 1.8881 -4.7039 42 1 10.7118 0.9443 -3.8503 43 1 10.4127 -0.8132 -3.6623 44 1 11.2615 -0.9319 -5.8358 45 1 10.8967 0.7844 -6.1676 46 1 12.1359 -0.1097 -8.7187 47 1 7.2551 -0.2528 -5.8384 48 1 8.0828 -1.6245 -5.0394 49 1 1.7638 -0.1579 -2.1388 50 1 1.6053 -1.7216 -1.2980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754758298.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:30 Heat of formation + Delta-G solvation = -103.277292 kcal Electronic energy + Delta-G solvation = -30484.025397 eV Core-core repulsion = 26318.470267 eV Total energy + Delta-G solvation = -4165.555131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.15286 -40.58539 -39.62574 -38.80598 -36.82667 -35.72459 -34.58241 -34.00098 -32.79467 -31.47249 -30.00321 -28.35191 -27.57743 -26.97479 -25.59712 -23.86572 -23.24627 -22.27698 -21.57066 -21.33839 -20.66725 -19.10929 -18.77959 -18.14127 -17.71804 -17.13048 -16.87364 -16.73043 -16.33426 -16.08510 -15.98439 -15.65343 -15.47968 -15.24505 -15.04408 -14.90575 -14.44190 -14.34462 -14.03436 -13.91640 -13.63827 -13.57246 -13.25626 -13.16847 -12.94302 -12.79124 -12.75902 -12.44627 -12.35394 -12.09565 -12.03536 -12.00506 -11.86054 -11.82143 -11.73348 -11.59069 -11.32808 -10.94768 -10.68923 -10.43013 -10.12649 -9.81290 -8.89136 -7.86347 -5.21343 0.23603 1.18470 1.44882 1.47124 1.55631 2.03083 2.36265 2.48122 3.15166 3.15669 3.31072 3.45490 3.63881 3.74361 3.83601 3.90771 3.92231 3.95145 4.09813 4.32019 4.40111 4.46348 4.54372 4.59811 4.61911 4.64844 4.75041 4.77832 4.81220 4.85887 4.88730 4.94310 4.96636 5.06486 5.07342 5.15029 5.18802 5.29127 5.34870 5.42689 5.44785 5.49907 5.64538 5.77715 5.87740 6.13443 6.19097 6.60623 6.77124 6.83301 7.09065 7.75990 8.39621 9.24195 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021991 B = 0.002276 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.960092 B =12296.676802 C =13097.808225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.061 0.939 4 C -0.114 4.114 5 C -0.127 4.127 6 C 0.042 3.958 7 N -0.575 5.575 8 C 0.503 3.497 9 O -0.548 6.548 10 C 0.514 3.486 11 O -0.518 6.518 12 N -0.687 5.687 13 C 0.116 3.884 14 C 0.118 3.882 15 O -0.554 6.554 16 C -0.117 4.117 17 C 0.187 3.813 18 N -0.621 5.621 19 C -0.243 4.243 20 H 0.082 0.918 21 C -0.066 4.066 22 N -0.949 5.949 23 Si 0.978 3.022 24 H -0.288 1.288 25 H -0.294 1.294 26 H -0.267 1.267 27 C 0.109 3.891 28 C 0.107 3.893 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.415 0.585 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.382 0.618 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.008 0.992 45 H 0.011 0.989 46 H 0.247 0.753 47 H 0.048 0.952 48 H 0.037 0.963 49 H 0.079 0.921 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.818 -1.375 22.543 30.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.080 0.920 4 C -0.151 4.151 5 C -0.165 4.165 6 C -0.078 4.078 7 N -0.307 5.307 8 C 0.285 3.715 9 O -0.426 6.426 10 C 0.296 3.704 11 O -0.397 6.397 12 N -0.339 5.339 13 C -0.008 4.008 14 C 0.076 3.924 15 O -0.360 6.360 16 C -0.155 4.155 17 C 0.062 3.938 18 N -0.347 5.347 19 C -0.372 4.372 20 H 0.100 0.900 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.806 3.194 24 H -0.216 1.216 25 H -0.221 1.221 26 H -0.192 1.192 27 C -0.017 4.017 28 C -0.015 4.015 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.162 0.838 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.231 0.769 42 H 0.103 0.897 43 H 0.119 0.881 44 H 0.026 0.974 45 H 0.030 0.970 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.098 0.902 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.957 -1.330 22.608 29.534 hybrid contribution -0.459 0.043 -1.863 1.919 sum -19.416 -1.287 20.745 28.443 Atomic orbital electron populations 1.21740 0.92810 1.02835 1.02521 1.21473 0.97108 0.99237 0.94334 0.92019 1.21638 0.94864 1.01326 0.97308 1.21909 0.96189 1.00692 0.97692 1.23473 1.04790 0.96899 0.82685 1.48117 1.07333 1.57131 1.18131 1.20085 0.87956 0.79376 0.84040 1.90763 1.75296 1.48073 1.28511 1.20125 0.87943 0.78061 0.84314 1.90313 1.74813 1.48432 1.26173 1.45814 1.07294 1.66629 1.14147 1.22054 0.77539 1.04022 0.97170 1.22459 0.96288 0.82083 0.91553 1.86591 1.30835 1.25587 1.93021 1.22795 0.92593 1.02814 0.97339 1.20884 0.87793 0.96661 0.88507 1.44620 1.05634 1.80667 1.03778 1.19437 0.97818 1.36861 0.83096 0.90008 1.25677 0.95664 1.02087 1.02498 1.70186 1.01036 1.54426 1.34145 0.85069 0.76910 0.77548 0.79859 1.21552 1.22058 1.19171 1.22391 0.91999 0.97224 0.90069 1.21990 0.77643 1.02125 0.99707 0.91513 0.91304 0.92585 0.90471 0.90751 0.92756 0.89022 0.90458 0.83781 0.74813 0.88680 0.88746 0.76882 0.89654 0.88091 0.97399 0.97041 0.94400 0.93401 0.94503 0.90227 0.89572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.20 71.98 0.66 -0.56 16 2 C -0.10 -1.23 2.87 -10.71 -0.03 -1.27 16 3 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.11 -1.12 5.16 30.62 0.16 -0.96 16 5 C -0.13 -1.58 6.10 30.82 0.19 -1.39 16 6 C 0.04 0.67 6.31 86.51 0.55 1.22 16 7 N -0.58 -11.22 2.97 -819.64 -2.43 -13.65 16 8 C 0.50 12.24 7.75 87.27 0.68 12.92 16 9 O -0.55 -15.85 15.93 -3.24 -0.05 -15.90 16 10 C 0.51 12.31 7.78 87.27 0.68 12.99 16 11 O -0.52 -12.96 13.08 -3.24 -0.04 -13.00 16 12 N -0.69 -15.95 5.18 -464.40 -2.41 -18.36 16 13 C 0.12 2.78 4.97 86.38 0.43 3.21 16 14 C 0.12 3.74 0.95 -9.40 -0.01 3.73 16 15 O -0.55 -18.33 13.18 -148.98 -1.96 -20.29 16 16 C -0.12 -4.13 6.16 31.79 0.20 -3.93 16 17 C 0.19 9.29 5.39 86.73 0.47 9.76 16 18 N -0.62 -31.81 3.39 -691.99 -2.35 -34.16 16 19 C -0.24 -13.76 10.27 84.03 0.86 -12.90 16 20 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 21 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 22 N -0.95 -58.09 10.34 21.65 0.22 -57.87 16 23 Si 0.98 46.48 29.56 68.60 2.03 48.51 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 27 C 0.11 4.18 5.74 86.86 0.50 4.68 16 28 C 0.11 1.70 5.70 86.36 0.49 2.19 16 29 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.15 2.87 3.74 -81.48 -0.30 2.57 16 38 H 0.41 9.60 6.80 -92.71 -0.63 8.97 16 39 H 0.10 2.18 8.00 -2.39 -0.02 2.16 16 40 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 41 H 0.38 9.87 8.57 -74.06 -0.63 9.24 16 42 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.10 3.00 7.94 -2.39 -0.02 2.98 16 44 H 0.01 0.43 7.67 -2.39 -0.02 0.41 16 45 H 0.01 0.65 7.22 -2.38 -0.02 0.64 16 46 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 47 H 0.05 1.76 7.80 -2.39 -0.02 1.75 16 48 H 0.04 1.37 8.04 -2.39 -0.02 1.35 16 49 H 0.08 1.52 7.04 -2.39 -0.02 1.50 16 50 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -72.36 391.44 -1.31 -73.67 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.60 Total: 24.72 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 6.28 Total: 26.32 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -6.96 Total: -124.03 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -2.06 Total: -49.19 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -72.36 -1.31 -73.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754758298.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.606 kcal (2) G-P(sol) polarization free energy of solvation -72.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds