Wall clock time and date at job start Tue Mar 31 2020 23:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.27883 * 2 1 4 4 C 1.54954 * 110.39254 * 237.85283 * 2 1 3 5 5 C 1.55300 * 100.94280 * 204.59656 * 4 2 1 6 6 H 1.09004 * 111.02615 * 275.86403 * 5 4 2 7 7 C 1.50701 * 110.84922 * 152.31916 * 5 4 2 8 8 O 1.21285 * 119.99654 * 5.71860 * 7 5 4 9 9 N 1.34780 * 120.00212 * 185.71140 * 7 5 4 10 10 C 1.46502 * 119.99700 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.46572 * 183.72034 * 10 9 7 12 12 N 1.46896 * 112.85319 * 49.33893 * 11 10 9 13 13 C 1.46904 * 110.99942 * 61.86441 * 12 11 10 14 14 C 1.50698 * 109.47337 * 180.02562 * 13 12 11 15 15 O 1.21301 * 119.99809 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00355 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00271 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99710 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00058 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00414 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00132 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47000 * 89.99528 * 21 19 17 23 23 H 1.48493 * 109.47358 * 209.99467 * 21 19 17 24 24 H 1.48502 * 109.46920 * 329.99529 * 21 19 17 25 25 C 1.53782 * 113.61630 * 278.02873 * 11 10 9 26 26 C 1.53780 * 87.08151 * 220.02195 * 25 11 10 27 27 C 1.53781 * 87.08167 * 25.43427 * 26 25 11 28 28 C 1.54389 * 102.25359 * 34.13407 * 5 4 2 29 29 O 1.43233 * 107.58664 * 338.63914 * 28 5 4 30 30 H 1.09005 * 109.46943 * 299.36259 * 1 2 3 31 31 H 1.08997 * 109.47601 * 59.36164 * 1 2 3 32 32 H 1.09003 * 109.47244 * 179.36781 * 1 2 3 33 33 H 1.09000 * 111.12290 * 86.67718 * 4 2 1 34 34 H 1.09002 * 111.12041 * 322.51860 * 4 2 1 35 35 H 0.96998 * 119.99792 * 0.02562 * 9 7 5 36 36 H 1.08993 * 109.46761 * 63.72185 * 10 9 7 37 37 H 1.09005 * 109.47282 * 303.71596 * 10 9 7 38 38 H 1.00902 * 111.00258 * 185.81746 * 12 11 10 39 39 H 1.08993 * 109.47137 * 300.00452 * 13 12 11 40 40 H 1.09004 * 109.47201 * 60.00386 * 13 12 11 41 41 H 0.97001 * 119.99875 * 0.02562 * 16 14 13 42 42 H 0.96997 * 120.00393 * 180.02562 * 20 19 17 43 43 H 1.09006 * 113.61208 * 334.57362 * 25 11 10 44 44 H 1.08995 * 113.61171 * 105.47290 * 25 11 10 45 45 H 1.08995 * 113.61815 * 270.87893 * 26 25 11 46 46 H 1.09003 * 113.68882 * 139.99244 * 26 25 11 47 47 H 1.08999 * 113.61044 * 220.01992 * 27 26 25 48 48 H 1.09001 * 113.69320 * 89.12822 * 27 26 25 49 49 H 1.09000 * 109.83213 * 98.15747 * 28 5 4 50 50 H 1.09000 * 109.82704 * 219.03924 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4721 -1.2002 -0.7170 6 1 4.2014 -0.4032 -0.8626 7 6 3.9261 -2.4691 -1.3914 8 8 3.2637 -2.9507 -2.2860 9 7 5.0681 -3.0687 -1.0005 10 6 5.5096 -4.3019 -1.6566 11 6 6.7733 -4.8215 -0.9682 12 7 6.6419 -4.8841 0.4936 13 6 5.5725 -5.8113 0.8868 14 6 5.4673 -5.8486 2.3896 15 8 6.2105 -5.1698 3.0666 16 7 4.5482 -6.6368 2.9815 17 6 4.4521 -6.6703 4.3487 18 1 5.1133 -6.0653 4.9514 19 6 3.5049 -7.4834 4.9589 20 7 2.7007 -8.2199 4.2255 21 14 3.3745 -7.5296 6.8218 22 1 2.4141 -6.4922 7.2766 23 1 2.8972 -8.8684 7.2516 24 1 4.7085 -7.2647 7.4181 25 6 8.0623 -4.1305 -1.4437 26 6 8.7306 -5.5145 -1.3897 27 6 7.3284 -6.1125 -1.5927 28 6 3.2125 -1.4395 0.7860 29 8 2.0286 -0.7157 1.1413 30 1 -0.3633 0.5039 0.8957 31 1 -0.3634 0.5237 -0.8842 32 1 -0.3634 -1.0276 -0.0113 33 1 2.1515 -0.1202 -2.0990 34 1 1.4504 -1.6422 -1.4503 35 1 5.5976 -2.6836 -0.2849 36 1 5.7248 -4.0984 -2.7055 37 1 4.7226 -5.0528 -1.5861 38 1 7.5179 -5.1387 0.9248 39 1 4.6258 -5.4740 0.4649 40 1 5.8015 -6.8095 0.5134 41 1 3.9546 -7.1805 2.4401 42 1 2.0392 -8.7872 4.6515 43 1 7.9911 -3.7189 -2.4505 44 1 8.4686 -3.4210 -0.7230 45 1 9.1696 -5.7499 -0.4202 46 1 9.4109 -5.7050 -2.2198 47 1 7.1425 -7.0030 -0.9922 48 1 7.0555 -6.2435 -2.6398 49 1 3.0650 -2.5035 0.9710 50 1 4.0585 -1.0766 1.3697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754990997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:37 Heat of formation + Delta-G solvation = -102.312015 kcal Electronic energy + Delta-G solvation = -30667.990422 eV Core-core repulsion = 26502.477149 eV Total energy + Delta-G solvation = -4165.513273 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.63319 -39.92131 -38.45763 -37.97877 -34.50103 -34.07314 -32.98573 -32.47262 -31.90147 -31.20909 -28.24748 -26.70099 -26.07516 -25.77219 -24.17986 -23.43277 -22.00758 -21.29920 -20.11198 -19.28839 -18.81872 -17.91740 -17.41498 -16.94557 -16.42129 -16.13901 -15.80502 -15.31482 -15.16245 -14.92804 -14.57000 -14.50663 -14.16641 -14.10060 -13.87320 -13.56825 -13.44028 -13.22202 -12.68482 -12.67190 -12.54029 -12.53112 -12.26823 -12.00435 -11.91433 -11.54405 -11.44137 -11.37923 -11.17642 -11.06605 -11.02890 -10.87066 -10.75764 -10.40009 -10.31440 -10.21966 -9.90462 -9.52242 -9.51829 -9.02789 -8.53156 -8.17614 -7.97790 -6.42445 -3.83606 2.57786 3.09143 3.17931 3.26859 3.32004 3.69289 3.87444 3.97215 4.16044 4.24147 4.39162 4.44641 4.59794 4.63698 4.70283 4.73086 4.90493 4.98112 5.05305 5.07621 5.22210 5.24128 5.28457 5.50681 5.52660 5.54147 5.54771 5.55175 5.60588 5.65790 5.69468 5.79231 5.79815 5.82781 5.90217 5.95852 5.98636 6.03813 6.08825 6.10105 6.25309 6.43579 6.93938 7.11328 7.51257 7.54317 7.55698 8.04341 8.20774 8.58814 9.16386 9.52300 10.02790 10.75076 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006901 B = 0.004031 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4056.183963 B = 6945.077278 C =10184.127569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.074 3.926 3 H 0.071 0.929 4 C -0.130 4.130 5 C -0.147 4.147 6 H 0.110 0.890 7 C 0.523 3.477 8 O -0.545 6.545 9 N -0.710 5.710 10 C 0.142 3.858 11 C 0.080 3.920 12 N -0.640 5.640 13 C 0.049 3.951 14 C 0.440 3.560 15 O -0.585 6.585 16 N -0.561 5.561 17 C -0.300 4.300 18 H 0.103 0.897 19 C 0.024 3.976 20 N -0.900 5.900 21 Si 0.929 3.071 22 H -0.277 1.277 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.129 4.129 26 C -0.142 4.142 27 C -0.169 4.169 28 C 0.065 3.935 29 O -0.374 6.374 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.412 0.588 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.355 0.645 39 H 0.085 0.915 40 H 0.046 0.954 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.082 0.918 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 11.659 -15.027 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.017 3.983 3 H 0.088 0.912 4 C -0.167 4.167 5 C -0.168 4.168 6 H 0.128 0.872 7 C 0.309 3.691 8 O -0.422 6.422 9 N -0.362 5.362 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.272 5.272 13 C -0.083 4.083 14 C 0.225 3.775 15 O -0.469 6.469 16 N -0.197 5.197 17 C -0.430 4.430 18 H 0.121 0.879 19 C -0.178 4.178 20 N -0.541 5.541 21 Si 0.756 3.244 22 H -0.203 1.203 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.166 4.166 26 C -0.179 4.179 27 C -0.209 4.209 28 C -0.012 4.012 29 O -0.294 6.294 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.248 0.752 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.176 0.824 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.104 0.896 49 H 0.096 0.904 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.630 12.175 -14.875 19.562 hybrid contribution 0.327 -1.259 0.526 1.403 sum 3.957 10.916 -14.349 18.458 Atomic orbital electron populations 1.21881 0.93561 1.03161 1.02288 1.23001 0.95203 0.95411 0.84735 0.91154 1.23210 0.93975 1.01495 0.98065 1.22907 0.99885 0.97005 0.97032 0.87212 1.20181 0.80615 0.85290 0.83063 1.90693 1.54827 1.65710 1.30995 1.45831 1.24541 1.26428 1.39357 1.21281 0.95160 0.86333 0.95491 1.22376 0.93830 0.95965 0.89097 1.60004 1.10533 1.53181 1.03482 1.21677 0.96116 0.94646 0.95875 1.19732 0.84741 0.84569 0.88443 1.90524 1.45505 1.45881 1.65001 1.41855 1.31454 1.38744 1.07638 1.19687 1.17451 1.24247 0.81588 0.87904 1.25262 0.95863 0.96117 1.00568 1.69611 1.20956 1.27324 1.36216 0.85867 0.78788 0.77441 0.82255 1.20313 1.20940 1.19420 1.23070 0.94920 0.97001 1.01657 1.22813 0.96340 0.96527 1.02267 1.23622 0.96938 0.98370 1.01986 1.23068 0.88549 0.97970 0.91654 1.88474 1.42331 1.64896 1.33659 0.91767 0.91273 0.91663 0.89645 0.88853 0.75170 0.91222 0.91336 0.82405 0.89643 0.93588 0.77501 0.91825 0.89530 0.90415 0.89991 0.91259 0.90956 0.89581 0.90390 0.90212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.62 37.15 0.36 -1.10 16 2 C 0.07 0.79 4.07 -25.70 -0.10 0.69 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 C -0.13 -1.38 5.65 -24.48 -0.14 -1.52 16 5 C -0.15 -1.60 3.39 -89.82 -0.30 -1.91 16 6 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 7 C 0.52 6.86 7.02 -10.98 -0.08 6.79 16 8 O -0.54 -8.91 15.76 5.55 0.09 -8.82 16 9 N -0.71 -8.39 5.34 -60.29 -0.32 -8.71 16 10 C 0.14 1.64 4.51 -4.04 -0.02 1.63 16 11 C 0.08 0.87 0.75 -130.79 -0.10 0.77 16 12 N -0.64 -8.96 5.45 -100.39 -0.55 -9.51 16 13 C 0.05 0.82 5.75 -4.97 -0.03 0.79 16 14 C 0.44 10.00 7.82 -10.99 -0.09 9.91 16 15 O -0.58 -15.13 15.78 5.54 0.09 -15.04 16 16 N -0.56 -14.04 5.29 -10.96 -0.06 -14.10 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 19 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 20 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 21 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.13 -1.15 7.36 -25.92 -0.19 -1.34 16 26 C -0.14 -1.26 7.74 -25.92 -0.20 -1.46 16 27 C -0.17 -1.66 7.18 -25.92 -0.19 -1.85 16 28 C 0.06 0.83 7.35 37.89 0.28 1.11 16 29 O -0.37 -5.29 11.04 -35.23 -0.39 -5.68 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 1.18 7.38 -51.93 -0.38 0.80 16 35 H 0.41 4.66 8.11 -40.82 -0.33 4.33 16 36 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16 37 H 0.07 0.91 7.33 -51.93 -0.38 0.53 16 38 H 0.35 5.26 7.59 -39.29 -0.30 4.96 16 39 H 0.09 1.42 6.89 -51.93 -0.36 1.07 16 40 H 0.05 0.72 6.85 -51.93 -0.36 0.36 16 41 H 0.39 9.53 7.90 -40.82 -0.32 9.21 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 43 H 0.09 0.68 7.97 -51.93 -0.41 0.27 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.78 7.71 -51.93 -0.40 0.38 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.80 6.91 -51.93 -0.36 0.44 16 48 H 0.09 0.75 8.10 -51.93 -0.42 0.33 16 49 H 0.08 1.17 7.81 -51.93 -0.41 0.77 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -32.25 403.21 -8.56 -40.81 By element: Atomic # 1 Polarization: 26.32 SS G_CDS: -8.16 Total: 18.16 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -1.04 Total: 4.60 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.20 Total: -56.16 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.21 Total: -29.55 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.25 -8.56 -40.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754990997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.502 kcal (2) G-P(sol) polarization free energy of solvation -32.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds