Wall clock time and date at job start Tue Mar 31 2020 23:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08994 * 110.27883 * 2 1 4 4 C 1.54954 * 110.39254 * 237.85283 * 2 1 3 5 5 C 1.55300 * 100.94280 * 204.59656 * 4 2 1 6 6 H 1.09004 * 111.02615 * 275.86403 * 5 4 2 7 7 C 1.50701 * 110.84922 * 152.31916 * 5 4 2 8 8 O 1.21285 * 119.99654 * 5.71860 * 7 5 4 9 9 N 1.34780 * 120.00212 * 185.71140 * 7 5 4 10 10 C 1.46502 * 119.99700 * 180.02562 * 9 7 5 11 11 C 1.52999 * 109.46572 * 183.72034 * 10 9 7 12 12 N 1.46896 * 112.85319 * 49.33893 * 11 10 9 13 13 C 1.46904 * 110.99942 * 61.86441 * 12 11 10 14 14 C 1.50698 * 109.47337 * 180.02562 * 13 12 11 15 15 O 1.21301 * 119.99809 * 359.97438 * 14 13 12 16 16 N 1.34774 * 120.00355 * 180.02562 * 14 13 12 17 17 C 1.37098 * 120.00271 * 180.02562 * 16 14 13 18 18 H 1.08004 * 119.99710 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00058 * 180.02562 * 17 16 14 20 20 N 1.31414 * 120.00414 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00132 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47000 * 89.99528 * 21 19 17 23 23 H 1.48493 * 109.47358 * 209.99467 * 21 19 17 24 24 H 1.48502 * 109.46920 * 329.99529 * 21 19 17 25 25 C 1.53782 * 113.61630 * 278.02873 * 11 10 9 26 26 C 1.53780 * 87.08151 * 220.02195 * 25 11 10 27 27 C 1.53781 * 87.08167 * 25.43427 * 26 25 11 28 28 C 1.54389 * 102.25359 * 34.13407 * 5 4 2 29 29 O 1.43233 * 107.58664 * 338.63914 * 28 5 4 30 30 H 1.09005 * 109.46943 * 299.36259 * 1 2 3 31 31 H 1.08997 * 109.47601 * 59.36164 * 1 2 3 32 32 H 1.09003 * 109.47244 * 179.36781 * 1 2 3 33 33 H 1.09000 * 111.12290 * 86.67718 * 4 2 1 34 34 H 1.09002 * 111.12041 * 322.51860 * 4 2 1 35 35 H 0.96998 * 119.99792 * 0.02562 * 9 7 5 36 36 H 1.08993 * 109.46761 * 63.72185 * 10 9 7 37 37 H 1.09005 * 109.47282 * 303.71596 * 10 9 7 38 38 H 1.00902 * 111.00258 * 185.81746 * 12 11 10 39 39 H 1.08993 * 109.47137 * 300.00452 * 13 12 11 40 40 H 1.09004 * 109.47201 * 60.00386 * 13 12 11 41 41 H 0.97001 * 119.99875 * 0.02562 * 16 14 13 42 42 H 0.96997 * 120.00393 * 180.02562 * 20 19 17 43 43 H 1.09006 * 113.61208 * 334.57362 * 25 11 10 44 44 H 1.08995 * 113.61171 * 105.47290 * 25 11 10 45 45 H 1.08995 * 113.61815 * 270.87893 * 26 25 11 46 46 H 1.09003 * 113.68882 * 139.99244 * 26 25 11 47 47 H 1.08999 * 113.61044 * 220.01992 * 27 26 25 48 48 H 1.09001 * 113.69320 * 89.12822 * 27 26 25 49 49 H 1.09000 * 109.83213 * 98.15747 * 28 5 4 50 50 H 1.09000 * 109.82704 * 219.03924 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9077 1.0224 0.0000 4 6 2.0699 -0.7728 -1.2297 5 6 3.4721 -1.2002 -0.7170 6 1 4.2014 -0.4032 -0.8626 7 6 3.9261 -2.4691 -1.3914 8 8 3.2637 -2.9507 -2.2860 9 7 5.0681 -3.0687 -1.0005 10 6 5.5096 -4.3019 -1.6566 11 6 6.7733 -4.8215 -0.9682 12 7 6.6419 -4.8841 0.4936 13 6 5.5725 -5.8113 0.8868 14 6 5.4673 -5.8486 2.3896 15 8 6.2105 -5.1698 3.0666 16 7 4.5482 -6.6368 2.9815 17 6 4.4521 -6.6703 4.3487 18 1 5.1133 -6.0653 4.9514 19 6 3.5049 -7.4834 4.9589 20 7 2.7007 -8.2199 4.2255 21 14 3.3745 -7.5296 6.8218 22 1 2.4141 -6.4922 7.2766 23 1 2.8972 -8.8684 7.2516 24 1 4.7085 -7.2647 7.4181 25 6 8.0623 -4.1305 -1.4437 26 6 8.7306 -5.5145 -1.3897 27 6 7.3284 -6.1125 -1.5927 28 6 3.2125 -1.4395 0.7860 29 8 2.0286 -0.7157 1.1413 30 1 -0.3633 0.5039 0.8957 31 1 -0.3634 0.5237 -0.8842 32 1 -0.3634 -1.0276 -0.0113 33 1 2.1515 -0.1202 -2.0990 34 1 1.4504 -1.6422 -1.4503 35 1 5.5976 -2.6836 -0.2849 36 1 5.7248 -4.0984 -2.7055 37 1 4.7226 -5.0528 -1.5861 38 1 7.5179 -5.1387 0.9248 39 1 4.6258 -5.4740 0.4649 40 1 5.8015 -6.8095 0.5134 41 1 3.9546 -7.1805 2.4401 42 1 2.0392 -8.7872 4.6515 43 1 7.9911 -3.7189 -2.4505 44 1 8.4686 -3.4210 -0.7230 45 1 9.1696 -5.7499 -0.4202 46 1 9.4109 -5.7050 -2.2198 47 1 7.1425 -7.0030 -0.9922 48 1 7.0555 -6.2435 -2.6398 49 1 3.0650 -2.5035 0.9710 50 1 4.0585 -1.0766 1.3697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754990997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:36 Heat of formation + Delta-G solvation = -127.091790 kcal Electronic energy + Delta-G solvation = -30669.064954 eV Core-core repulsion = 26502.477149 eV Total energy + Delta-G solvation = -4166.587805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62520 -40.91693 -39.85009 -39.40839 -36.03547 -35.50501 -34.30493 -33.43448 -33.23219 -32.77510 -29.25783 -28.19357 -26.95982 -26.71413 -25.83499 -24.44711 -22.89902 -22.16254 -21.15225 -21.05914 -19.93059 -19.75723 -18.37593 -17.96872 -17.74733 -17.21839 -17.00644 -16.64913 -16.36251 -16.13173 -15.92500 -15.83469 -15.65965 -15.38047 -14.82051 -14.76970 -14.56489 -14.31512 -14.11596 -13.82935 -13.55682 -13.40961 -13.37622 -13.27806 -13.10411 -12.93477 -12.84870 -12.51063 -12.42181 -12.27156 -12.13221 -12.08640 -11.85170 -11.68358 -11.59111 -11.50960 -11.16341 -10.94053 -10.51601 -10.36084 -10.04902 -10.02893 -9.39675 -8.47693 -5.96624 1.36959 1.40749 1.53314 1.53928 2.02979 2.12895 2.27791 2.76342 2.84676 3.19576 3.25934 3.42518 3.54886 3.64094 3.76624 3.77271 3.83383 3.94019 4.00843 4.14384 4.21114 4.24280 4.35116 4.42778 4.46226 4.49184 4.62466 4.64137 4.68634 4.73013 4.79354 4.83220 4.86212 4.86510 4.97203 5.07129 5.14425 5.15680 5.19632 5.28682 5.33554 5.40006 5.46578 5.88322 6.01563 6.07091 6.35575 6.55142 6.57221 7.10936 7.19845 7.54121 8.08110 8.69769 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.006901 B = 0.004031 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4056.183963 B = 6945.077278 C =10184.127569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.069 3.931 3 H 0.096 0.904 4 C -0.126 4.126 5 C -0.137 4.137 6 H 0.145 0.855 7 C 0.520 3.480 8 O -0.580 6.580 9 N -0.703 5.703 10 C 0.142 3.858 11 C 0.077 3.923 12 N -0.643 5.643 13 C 0.069 3.931 14 C 0.441 3.559 15 O -0.616 6.616 16 N -0.574 5.574 17 C -0.332 4.332 18 H 0.082 0.918 19 C -0.013 4.013 20 N -0.922 5.922 21 Si 0.992 3.008 22 H -0.273 1.273 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.116 4.116 26 C -0.137 4.137 27 C -0.167 4.167 28 C 0.065 3.935 29 O -0.403 6.403 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.046 0.954 33 H 0.110 0.890 34 H 0.067 0.933 35 H 0.416 0.584 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.352 0.648 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.393 0.607 42 H 0.277 0.723 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.058 0.942 48 H 0.102 0.898 49 H 0.045 0.955 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.168 12.874 -16.241 21.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.012 3.988 3 H 0.114 0.886 4 C -0.164 4.164 5 C -0.158 4.158 6 H 0.163 0.837 7 C 0.307 3.693 8 O -0.461 6.461 9 N -0.354 5.354 10 C 0.017 3.983 11 C -0.015 4.015 12 N -0.275 5.275 13 C -0.063 4.063 14 C 0.228 3.772 15 O -0.502 6.502 16 N -0.211 5.211 17 C -0.461 4.461 18 H 0.100 0.900 19 C -0.213 4.213 20 N -0.563 5.563 21 Si 0.816 3.184 22 H -0.198 1.198 23 H -0.196 1.196 24 H -0.194 1.194 25 C -0.154 4.154 26 C -0.175 4.175 27 C -0.207 4.207 28 C -0.012 4.012 29 O -0.323 6.323 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.252 0.748 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.173 0.827 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.227 0.773 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.105 0.895 47 H 0.077 0.923 48 H 0.120 0.880 49 H 0.063 0.937 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.571 13.389 -16.107 21.438 hybrid contribution 0.058 -1.615 0.854 1.827 sum 4.629 11.775 -15.253 19.817 Atomic orbital electron populations 1.21919 0.93040 1.02384 1.03556 1.23273 0.95770 0.96167 0.83584 0.88623 1.23191 0.93254 1.00967 0.99008 1.22925 1.00926 0.96865 0.95091 0.83729 1.20555 0.80403 0.85763 0.82617 1.90677 1.55830 1.66783 1.32785 1.45838 1.24207 1.26271 1.39071 1.21331 0.94783 0.85734 0.96405 1.22458 0.94567 0.97569 0.86903 1.59961 1.09519 1.52194 1.05831 1.21404 0.97433 0.96366 0.91140 1.20721 0.82964 0.82641 0.90863 1.90493 1.46349 1.46717 1.66657 1.41944 1.32379 1.39692 1.07053 1.19670 1.18270 1.25272 0.82891 0.90040 1.26045 0.95072 0.95310 1.04864 1.69680 1.21211 1.27566 1.37849 0.84941 0.78647 0.77930 0.76927 1.19842 1.19612 1.19426 1.23054 0.92886 0.96954 1.02472 1.22789 0.96021 0.96117 1.02550 1.23635 0.97486 0.97001 1.02531 1.22999 0.88672 0.96124 0.93372 1.88446 1.42856 1.65379 1.35613 0.91750 0.88710 0.93500 0.87139 0.91444 0.74751 0.89733 0.93351 0.82741 0.89446 0.91969 0.77342 0.91373 0.87602 0.90533 0.90848 0.89494 0.92302 0.87980 0.93705 0.89120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.62 71.98 0.69 -2.10 16 2 C 0.07 1.38 4.07 31.26 0.13 1.51 16 3 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 4 C -0.13 -2.55 5.65 32.05 0.18 -2.37 16 5 C -0.14 -2.82 3.39 -10.28 -0.03 -2.85 16 6 H 0.15 1.98 8.14 -2.38 -0.02 1.96 16 7 C 0.52 13.34 7.02 87.66 0.62 13.96 16 8 O -0.58 -18.95 15.76 -3.05 -0.05 -19.00 16 9 N -0.70 -16.00 5.34 -463.05 -2.47 -18.47 16 10 C 0.14 3.12 4.51 86.38 0.39 3.51 16 11 C 0.08 1.55 0.75 4.06 0.00 1.55 16 12 N -0.64 -17.66 5.45 -471.54 -2.57 -20.23 16 13 C 0.07 2.32 5.75 85.56 0.49 2.81 16 14 C 0.44 20.54 7.82 87.66 0.69 21.22 16 15 O -0.62 -32.68 15.78 -3.09 -0.05 -32.73 16 16 N -0.57 -29.63 5.29 -306.98 -1.62 -31.26 16 17 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 18 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 19 C -0.01 -0.72 5.50 84.92 0.47 -0.25 16 20 N -0.92 -50.75 13.05 21.66 0.28 -50.47 16 21 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 25 C -0.12 -1.76 7.36 31.12 0.23 -1.53 16 26 C -0.14 -2.10 7.74 31.12 0.24 -1.86 16 27 C -0.17 -2.95 7.18 31.12 0.22 -2.73 16 28 C 0.07 1.69 7.35 72.45 0.53 2.22 16 29 O -0.40 -11.40 11.04 -148.98 -1.64 -13.04 16 30 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.73 7.38 -2.39 -0.02 1.71 16 35 H 0.42 8.95 8.11 -92.71 -0.75 8.20 16 36 H 0.08 1.65 7.95 -2.39 -0.02 1.63 16 37 H 0.05 1.27 7.33 -2.38 -0.02 1.26 16 38 H 0.35 10.25 7.59 -89.69 -0.68 9.57 16 39 H 0.09 2.95 6.89 -2.39 -0.02 2.94 16 40 H 0.06 1.92 6.85 -2.38 -0.02 1.90 16 41 H 0.39 19.74 7.90 -92.71 -0.73 19.00 16 42 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 43 H 0.11 1.26 7.97 -2.38 -0.02 1.24 16 44 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.07 1.27 7.71 -2.39 -0.02 1.25 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.06 1.22 6.91 -2.39 -0.02 1.20 16 48 H 0.10 1.51 8.10 -2.39 -0.02 1.49 16 49 H 0.04 1.43 7.81 -2.39 -0.02 1.41 16 50 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -71.70 403.21 -1.63 -73.32 By element: Atomic # 1 Polarization: 52.57 SS G_CDS: -1.19 Total: 51.38 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.66 Total: 15.02 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -6.38 Total: -120.43 kcal Atomic # 8 Polarization: -63.03 SS G_CDS: -1.74 Total: -64.77 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.70 -1.63 -73.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754990997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.768 kcal (2) G-P(sol) polarization free energy of solvation -71.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds