Wall clock time and date at job start Tue Mar 31 2020 23:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.87079 * 2 1 4 4 C 1.54102 * 110.00761 * 121.08684 * 2 1 3 5 5 C 1.54809 * 104.18892 * 121.52480 * 4 2 1 6 6 H 1.08997 * 110.93775 * 262.67205 * 5 4 2 7 7 C 1.50699 * 110.90385 * 139.08085 * 5 4 2 8 8 O 1.21273 * 120.00361 * 5.83886 * 7 5 4 9 9 N 1.34781 * 119.99726 * 185.84039 * 7 5 4 10 10 C 1.46502 * 120.00020 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.47017 * 176.03392 * 10 9 7 12 12 N 1.46903 * 112.85422 * 292.58707 * 11 10 9 13 13 C 1.46903 * 110.99492 * 294.50943 * 12 11 10 14 14 C 1.50701 * 109.46926 * 177.74850 * 13 12 11 15 15 O 1.21300 * 119.99941 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00295 * 180.02562 * 14 13 12 17 17 C 1.37101 * 120.00186 * 179.97438 * 16 14 13 18 18 H 1.07993 * 120.00081 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99877 * 179.97438 * 17 16 14 20 20 N 1.31406 * 119.99891 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99722 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47075 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47018 * 120.00177 * 21 19 17 24 24 H 1.48496 * 109.47267 * 240.00147 * 21 19 17 25 25 C 1.53784 * 113.61393 * 161.27732 * 11 10 9 26 26 C 1.53784 * 87.08390 * 220.01790 * 25 11 10 27 27 C 1.53784 * 113.61648 * 63.78127 * 11 10 9 28 28 C 1.54994 * 102.09078 * 20.88163 * 5 4 2 29 29 O 1.43744 * 109.88124 * 238.99766 * 2 1 3 30 30 H 1.08999 * 109.46481 * 179.55392 * 1 2 3 31 31 H 1.08998 * 109.46881 * 299.54707 * 1 2 3 32 32 H 1.08996 * 109.46844 * 59.55238 * 1 2 3 33 33 H 1.08998 * 110.48418 * 2.84954 * 4 2 1 34 34 H 1.08998 * 110.48653 * 240.20799 * 4 2 1 35 35 H 0.97005 * 119.99971 * 0.02562 * 9 7 5 36 36 H 1.08997 * 109.47051 * 296.03505 * 10 9 7 37 37 H 1.09002 * 109.46619 * 56.03474 * 10 9 7 38 38 H 1.00896 * 111.00148 * 170.55528 * 12 11 10 39 39 H 1.09002 * 109.47190 * 297.74276 * 13 12 11 40 40 H 1.08997 * 109.47362 * 57.74685 * 13 12 11 41 41 H 0.97000 * 119.99734 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00115 * 179.97438 * 20 19 17 43 43 H 1.08999 * 113.61537 * 334.56877 * 25 11 10 44 44 H 1.09003 * 113.61127 * 105.47064 * 25 11 10 45 45 H 1.09000 * 113.61364 * 270.88471 * 26 25 11 46 46 H 1.08996 * 113.61255 * 139.97856 * 26 25 11 47 47 H 1.08992 * 113.61747 * 254.53174 * 27 11 10 48 48 H 1.09003 * 113.60869 * 25.43444 * 27 11 10 49 49 H 1.08999 * 110.61615 * 81.47855 * 28 5 4 50 50 H 1.09000 * 110.61815 * 204.31192 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0573 -0.7477 1.2401 5 6 2.9245 -1.8888 0.6549 6 1 2.3614 -2.8208 0.6074 7 6 4.1890 -2.0675 1.4549 8 8 4.3564 -1.4326 2.4746 9 7 5.1341 -2.9329 1.0372 10 6 6.3637 -3.1062 1.8146 11 6 7.2160 -4.2080 1.1818 12 7 6.6019 -5.5380 1.2910 13 6 6.5174 -5.9651 2.6941 14 6 5.8337 -7.3059 2.7706 15 8 5.4539 -7.8519 1.7562 16 7 5.6435 -7.8981 3.9662 17 6 5.0211 -9.1177 4.0359 18 1 4.6836 -9.6041 3.1327 19 6 4.8254 -9.7284 5.2687 20 7 5.2364 -9.1367 6.3676 21 14 3.9767 -11.3898 5.3636 22 1 3.6129 -11.8386 3.9956 23 1 4.8950 -12.3801 5.9812 24 1 2.7483 -11.2716 6.1895 25 6 8.6911 -4.1710 1.6149 26 6 9.0459 -4.5129 0.1581 27 6 7.7056 -3.8702 -0.2364 28 6 3.2399 -1.3601 -0.7675 29 8 2.0188 -0.6963 -1.1587 30 1 -0.3632 -1.0277 -0.0080 31 1 -0.3633 0.5068 0.8940 32 1 -0.3633 0.5208 -0.8859 33 1 1.2295 -1.1564 1.8196 34 1 2.6645 -0.0843 1.8559 35 1 5.0004 -3.4404 0.2213 36 1 6.9243 -2.1715 1.8208 37 1 6.1105 -3.3850 2.8374 38 1 7.1044 -6.2149 0.7367 39 1 7.5214 -6.0449 3.1107 40 1 5.9450 -5.2324 3.2630 41 1 5.9469 -7.4613 4.7775 42 1 5.0995 -9.5628 7.2282 43 1 9.0301 -3.1830 1.9264 44 1 8.9575 -4.9543 2.3246 45 1 9.0917 -5.5838 -0.0402 46 1 9.9157 -3.9742 -0.2174 47 1 7.1765 -4.4106 -1.0212 48 1 7.7751 -2.7999 -0.4309 49 1 4.0690 -0.6531 -0.7391 50 1 3.4641 -2.1857 -1.4429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754990999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:44 Heat of formation + Delta-G solvation = -102.367078 kcal Electronic energy + Delta-G solvation = -30094.626118 eV Core-core repulsion = 25929.110457 eV Total energy + Delta-G solvation = -4165.515661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.70782 -40.00534 -38.57068 -37.98288 -34.49655 -34.09317 -33.03722 -32.61787 -31.98019 -31.21841 -28.26191 -26.74061 -26.13703 -25.78777 -24.20349 -23.56468 -22.23485 -21.35912 -20.15815 -19.29721 -18.85769 -17.92714 -17.76400 -16.55385 -16.42691 -16.07380 -15.85871 -15.63241 -15.30957 -15.15268 -14.77399 -14.52966 -14.26555 -14.13420 -13.86134 -13.58916 -13.39438 -13.15692 -12.83933 -12.68571 -12.67362 -12.39135 -12.38101 -12.23864 -12.00012 -11.58506 -11.55763 -11.46390 -11.15281 -11.10087 -11.00956 -10.87486 -10.78020 -10.36323 -10.30859 -10.23432 -10.00252 -9.88579 -9.54236 -9.07528 -8.52563 -8.14299 -7.98752 -6.43834 -3.84848 2.53930 3.02325 3.14705 3.25503 3.32431 3.57766 3.86913 3.95141 4.13422 4.22772 4.36149 4.44889 4.47844 4.58729 4.65549 4.69485 4.72543 4.89228 4.96907 5.07177 5.12780 5.21276 5.27055 5.34266 5.38909 5.42885 5.47603 5.51211 5.54038 5.64272 5.66372 5.67154 5.75286 5.76277 5.79744 5.92437 5.92786 5.94785 6.01689 6.09374 6.25341 6.39380 6.58913 7.12121 7.46094 7.53224 7.54336 8.03728 8.15525 8.58239 9.15473 9.51626 10.02494 10.73900 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.002783 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.030125 B =10057.092397 C =12085.945758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.071 3.929 3 H 0.069 0.931 4 C -0.137 4.137 5 C -0.146 4.146 6 H 0.115 0.885 7 C 0.523 3.477 8 O -0.543 6.543 9 N -0.710 5.710 10 C 0.141 3.859 11 C 0.080 3.920 12 N -0.638 5.638 13 C 0.048 3.952 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.901 5.901 21 Si 0.929 3.071 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.169 4.169 26 C -0.142 4.142 27 C -0.131 4.131 28 C 0.061 3.939 29 O -0.371 6.371 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.407 0.593 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.353 0.647 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.500 18.060 -11.897 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.013 3.987 3 H 0.087 0.913 4 C -0.175 4.175 5 C -0.168 4.168 6 H 0.133 0.867 7 C 0.308 3.692 8 O -0.420 6.420 9 N -0.361 5.361 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.270 5.270 13 C -0.084 4.084 14 C 0.227 3.773 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.542 5.542 21 Si 0.756 3.244 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.209 4.209 26 C -0.179 4.179 27 C -0.169 4.169 28 C -0.016 4.016 29 O -0.290 6.290 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.242 0.758 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.174 0.826 39 H 0.065 0.935 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.104 0.896 44 H 0.091 0.909 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.106 0.894 49 H 0.082 0.918 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.594 18.291 -11.865 21.810 hybrid contribution 0.809 -1.157 0.868 1.657 sum 1.403 17.133 -10.998 20.407 Atomic orbital electron populations 1.21939 0.93531 1.03032 1.02374 1.22802 0.95325 0.95843 0.84686 0.91301 1.22957 0.99846 0.96724 0.97962 1.22897 0.95467 1.02112 0.96325 0.86670 1.20176 0.84218 0.79314 0.85472 1.90691 1.79069 1.47133 1.25141 1.45778 1.18788 1.42941 1.28545 1.21277 0.84556 0.96669 0.95773 1.22366 0.91190 0.90921 0.96780 1.60010 1.55593 1.01708 1.09739 1.21693 0.99547 0.97205 0.89960 1.19745 0.85759 0.87209 0.84618 1.90523 1.55346 1.66223 1.34718 1.41867 1.52161 1.19130 1.06766 1.19741 1.33657 0.94966 0.94505 0.87872 1.25274 0.97899 1.00003 0.94775 1.69618 1.46971 1.39394 0.98204 0.85804 0.78719 0.81282 0.78564 1.19201 1.20757 1.20708 1.23626 0.97093 1.02723 0.97467 1.22815 0.97657 1.01173 0.96263 1.23050 0.96501 1.01278 0.96050 1.23455 0.88135 0.96746 0.93234 1.88897 1.39176 1.67684 1.33218 0.91692 0.91146 0.91944 0.89741 0.88777 0.75818 0.91270 0.91041 0.82603 0.93509 0.89550 0.77480 0.91881 0.89558 0.90865 0.89992 0.91208 0.90381 0.89434 0.91753 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.37 37.16 0.35 -0.81 16 2 C 0.07 0.64 4.05 -26.15 -0.11 0.54 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.14 -1.35 6.02 -25.20 -0.15 -1.50 16 5 C -0.15 -1.48 3.52 -89.77 -0.32 -1.80 16 6 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 7 C 0.52 6.54 7.17 -10.98 -0.08 6.46 16 8 O -0.54 -8.70 15.51 5.56 0.09 -8.62 16 9 N -0.71 -7.90 5.39 -60.30 -0.33 -8.23 16 10 C 0.14 1.64 4.99 -4.04 -0.02 1.62 16 11 C 0.08 0.86 0.66 -130.79 -0.09 0.78 16 12 N -0.64 -9.16 6.00 -100.39 -0.60 -9.76 16 13 C 0.05 0.82 5.79 -4.97 -0.03 0.79 16 14 C 0.44 10.18 7.83 -10.99 -0.09 10.09 16 15 O -0.58 -15.40 15.83 5.54 0.09 -15.31 16 16 N -0.56 -14.18 5.29 -10.96 -0.06 -14.23 16 17 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 21 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 22 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 25 C -0.17 -1.64 7.17 -25.92 -0.19 -1.83 16 26 C -0.14 -1.23 7.75 -25.91 -0.20 -1.43 16 27 C -0.13 -1.12 6.97 -25.91 -0.18 -1.30 16 28 C 0.06 0.54 7.12 38.21 0.27 0.81 16 29 O -0.37 -3.91 11.19 -35.23 -0.39 -4.30 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.79 7.70 -51.93 -0.40 0.39 16 34 H 0.09 1.04 6.94 -51.93 -0.36 0.68 16 35 H 0.41 4.01 8.25 -40.82 -0.34 3.67 16 36 H 0.07 0.74 8.02 -51.93 -0.42 0.33 16 37 H 0.07 0.99 6.52 -51.93 -0.34 0.65 16 38 H 0.35 5.27 7.68 -39.29 -0.30 4.96 16 39 H 0.05 0.72 6.71 -51.93 -0.35 0.37 16 40 H 0.09 1.44 6.49 -51.93 -0.34 1.11 16 41 H 0.39 9.53 7.90 -40.82 -0.32 9.20 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.09 0.74 8.02 -51.93 -0.42 0.33 16 44 H 0.07 0.79 6.71 -51.93 -0.35 0.45 16 45 H 0.08 0.77 7.73 -51.93 -0.40 0.37 16 46 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 49 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -32.76 402.13 -8.57 -41.32 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -8.06 Total: 16.46 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.06 Total: 4.45 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: -0.26 Total: -56.06 kcal Atomic # 8 Polarization: -28.01 SS G_CDS: -0.22 Total: -28.23 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.76 -8.57 -41.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754990999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.043 kcal (2) G-P(sol) polarization free energy of solvation -32.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds