Wall clock time and date at job start Tue Mar 31 2020 23:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.87079 * 2 1 4 4 C 1.54102 * 110.00761 * 121.08684 * 2 1 3 5 5 C 1.54809 * 104.18892 * 121.52480 * 4 2 1 6 6 H 1.08997 * 110.93775 * 262.67205 * 5 4 2 7 7 C 1.50699 * 110.90385 * 139.08085 * 5 4 2 8 8 O 1.21273 * 120.00361 * 5.83886 * 7 5 4 9 9 N 1.34781 * 119.99726 * 185.84039 * 7 5 4 10 10 C 1.46502 * 120.00020 * 179.97438 * 9 7 5 11 11 C 1.52994 * 109.47017 * 176.03392 * 10 9 7 12 12 N 1.46903 * 112.85422 * 292.58707 * 11 10 9 13 13 C 1.46903 * 110.99492 * 294.50943 * 12 11 10 14 14 C 1.50701 * 109.46926 * 177.74850 * 13 12 11 15 15 O 1.21300 * 119.99941 * 359.97438 * 14 13 12 16 16 N 1.34771 * 120.00295 * 180.02562 * 14 13 12 17 17 C 1.37101 * 120.00186 * 179.97438 * 16 14 13 18 18 H 1.07993 * 120.00081 * 0.02562 * 17 16 14 19 19 C 1.38957 * 119.99877 * 179.97438 * 17 16 14 20 20 N 1.31406 * 119.99891 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99722 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47075 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47018 * 120.00177 * 21 19 17 24 24 H 1.48496 * 109.47267 * 240.00147 * 21 19 17 25 25 C 1.53784 * 113.61393 * 161.27732 * 11 10 9 26 26 C 1.53784 * 87.08390 * 220.01790 * 25 11 10 27 27 C 1.53784 * 113.61648 * 63.78127 * 11 10 9 28 28 C 1.54994 * 102.09078 * 20.88163 * 5 4 2 29 29 O 1.43744 * 109.88124 * 238.99766 * 2 1 3 30 30 H 1.08999 * 109.46481 * 179.55392 * 1 2 3 31 31 H 1.08998 * 109.46881 * 299.54707 * 1 2 3 32 32 H 1.08996 * 109.46844 * 59.55238 * 1 2 3 33 33 H 1.08998 * 110.48418 * 2.84954 * 4 2 1 34 34 H 1.08998 * 110.48653 * 240.20799 * 4 2 1 35 35 H 0.97005 * 119.99971 * 0.02562 * 9 7 5 36 36 H 1.08997 * 109.47051 * 296.03505 * 10 9 7 37 37 H 1.09002 * 109.46619 * 56.03474 * 10 9 7 38 38 H 1.00896 * 111.00148 * 170.55528 * 12 11 10 39 39 H 1.09002 * 109.47190 * 297.74276 * 13 12 11 40 40 H 1.08997 * 109.47362 * 57.74685 * 13 12 11 41 41 H 0.97000 * 119.99734 * 359.97438 * 16 14 13 42 42 H 0.96998 * 120.00115 * 179.97438 * 20 19 17 43 43 H 1.08999 * 113.61537 * 334.56877 * 25 11 10 44 44 H 1.09003 * 113.61127 * 105.47064 * 25 11 10 45 45 H 1.09000 * 113.61364 * 270.88471 * 26 25 11 46 46 H 1.08996 * 113.61255 * 139.97856 * 26 25 11 47 47 H 1.08992 * 113.61747 * 254.53174 * 27 11 10 48 48 H 1.09003 * 113.60869 * 25.43444 * 27 11 10 49 49 H 1.08999 * 110.61615 * 81.47855 * 28 5 4 50 50 H 1.09000 * 110.61815 * 204.31192 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 6 2.0573 -0.7477 1.2401 5 6 2.9245 -1.8888 0.6549 6 1 2.3614 -2.8208 0.6074 7 6 4.1890 -2.0675 1.4549 8 8 4.3564 -1.4326 2.4746 9 7 5.1341 -2.9329 1.0372 10 6 6.3637 -3.1062 1.8146 11 6 7.2160 -4.2080 1.1818 12 7 6.6019 -5.5380 1.2910 13 6 6.5174 -5.9651 2.6941 14 6 5.8337 -7.3059 2.7706 15 8 5.4539 -7.8519 1.7562 16 7 5.6435 -7.8981 3.9662 17 6 5.0211 -9.1177 4.0359 18 1 4.6836 -9.6041 3.1327 19 6 4.8254 -9.7284 5.2687 20 7 5.2364 -9.1367 6.3676 21 14 3.9767 -11.3898 5.3636 22 1 3.6129 -11.8386 3.9956 23 1 4.8950 -12.3801 5.9812 24 1 2.7483 -11.2716 6.1895 25 6 8.6911 -4.1710 1.6149 26 6 9.0459 -4.5129 0.1581 27 6 7.7056 -3.8702 -0.2364 28 6 3.2399 -1.3601 -0.7675 29 8 2.0188 -0.6963 -1.1587 30 1 -0.3632 -1.0277 -0.0080 31 1 -0.3633 0.5068 0.8940 32 1 -0.3633 0.5208 -0.8859 33 1 1.2295 -1.1564 1.8196 34 1 2.6645 -0.0843 1.8559 35 1 5.0004 -3.4404 0.2213 36 1 6.9243 -2.1715 1.8208 37 1 6.1105 -3.3850 2.8374 38 1 7.1044 -6.2149 0.7367 39 1 7.5214 -6.0449 3.1107 40 1 5.9450 -5.2324 3.2630 41 1 5.9469 -7.4613 4.7775 42 1 5.0995 -9.5628 7.2282 43 1 9.0301 -3.1830 1.9264 44 1 8.9575 -4.9543 2.3246 45 1 9.0917 -5.5838 -0.0402 46 1 9.9157 -3.9742 -0.2174 47 1 7.1765 -4.4106 -1.0212 48 1 7.7751 -2.7999 -0.4309 49 1 4.0690 -0.6531 -0.7391 50 1 3.4641 -2.1857 -1.4429 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754990999.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:43 Heat of formation + Delta-G solvation = -127.695170 kcal Electronic energy + Delta-G solvation = -30095.724426 eV Core-core repulsion = 25929.110457 eV Total energy + Delta-G solvation = -4166.613969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.62482 -40.92611 -39.86303 -39.40355 -36.04239 -35.47486 -34.35057 -33.41485 -33.24081 -32.70887 -29.24920 -28.20468 -26.84457 -26.73108 -25.81440 -24.46461 -23.07025 -22.12169 -21.13743 -21.04972 -19.94157 -19.76832 -18.67413 -17.83683 -17.44099 -17.03464 -16.95239 -16.62946 -16.38233 -16.31225 -16.03545 -15.86977 -15.74419 -15.48460 -14.88285 -14.75892 -14.37161 -14.21045 -14.11983 -13.71819 -13.58686 -13.45020 -13.33296 -13.20036 -13.16097 -12.96974 -12.94918 -12.57954 -12.42305 -12.29546 -12.12635 -11.85741 -11.78305 -11.67451 -11.58224 -11.52543 -11.12022 -10.91390 -10.72642 -10.37267 -10.05956 -10.03612 -9.35439 -8.48589 -5.97550 1.35159 1.40542 1.54777 1.55470 2.02404 2.12314 2.27059 2.78425 2.87964 3.18429 3.33700 3.42961 3.55433 3.67588 3.74877 3.77306 3.88161 3.94264 3.99186 4.16358 4.21358 4.24268 4.35028 4.44923 4.45757 4.50668 4.58487 4.66306 4.68854 4.76820 4.81270 4.84265 4.86902 4.95149 4.98665 5.07711 5.09356 5.13082 5.19871 5.29428 5.34293 5.39524 5.46471 5.87491 5.88519 6.07738 6.37594 6.54505 6.57023 7.10380 7.20289 7.53612 8.08050 8.69156 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009400 B = 0.002783 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.030125 B =10057.092397 C =12085.945758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.070 3.930 3 H 0.076 0.924 4 C -0.136 4.136 5 C -0.145 4.145 6 H 0.118 0.882 7 C 0.521 3.479 8 O -0.582 6.582 9 N -0.701 5.701 10 C 0.142 3.858 11 C 0.077 3.923 12 N -0.645 5.645 13 C 0.066 3.934 14 C 0.440 3.560 15 O -0.618 6.618 16 N -0.575 5.575 17 C -0.331 4.331 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.922 5.922 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.272 1.272 25 C -0.166 4.166 26 C -0.137 4.137 27 C -0.118 4.118 28 C 0.065 3.935 29 O -0.386 6.386 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.414 0.586 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.351 0.649 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.394 0.606 42 H 0.277 0.723 43 H 0.102 0.898 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.087 0.913 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.070 0.930 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 18.754 -12.874 22.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.013 3.987 3 H 0.094 0.906 4 C -0.174 4.174 5 C -0.166 4.166 6 H 0.136 0.864 7 C 0.308 3.692 8 O -0.463 6.463 9 N -0.351 5.351 10 C 0.018 3.982 11 C -0.015 4.015 12 N -0.277 5.277 13 C -0.066 4.066 14 C 0.228 3.772 15 O -0.504 6.504 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.098 0.902 19 C -0.214 4.214 20 N -0.563 5.563 21 Si 0.817 3.183 22 H -0.196 1.196 23 H -0.196 1.196 24 H -0.197 1.197 25 C -0.206 4.206 26 C -0.175 4.175 27 C -0.155 4.155 28 C -0.011 4.011 29 O -0.305 6.305 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.251 0.749 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.171 0.829 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.228 0.772 42 H 0.087 0.913 43 H 0.121 0.879 44 H 0.078 0.922 45 H 0.091 0.909 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.125 0.875 49 H 0.088 0.912 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.080 18.995 -12.858 22.963 hybrid contribution 0.695 -1.325 1.149 1.886 sum 1.775 17.670 -11.709 21.271 Atomic orbital electron populations 1.21945 0.92519 1.02969 1.03253 1.22881 0.96169 0.95863 0.83787 0.90625 1.22935 0.99659 0.96550 0.98296 1.22896 0.94332 1.02393 0.96986 0.86404 1.20557 0.84841 0.78786 0.85049 1.90673 1.79954 1.48744 1.26901 1.45762 1.18486 1.42362 1.28539 1.21284 0.84874 0.97490 0.94567 1.22441 0.91515 0.88568 0.98983 1.59959 1.56800 1.03150 1.07840 1.21446 0.99656 0.93392 0.92101 1.20774 0.84427 0.88662 0.83362 1.90490 1.56521 1.67712 1.35726 1.41958 1.52716 1.18904 1.07614 1.19700 1.35586 0.96526 0.94273 0.90161 1.26066 0.98040 1.03231 0.94070 1.69682 1.47289 1.40694 0.98629 0.84865 0.78002 0.77122 0.78329 1.19588 1.19554 1.19744 1.23641 0.95764 1.03245 0.97978 1.22794 0.98435 1.00944 0.95314 1.23039 0.95857 1.02471 0.94170 1.23542 0.87787 0.97340 0.92477 1.88883 1.39821 1.67958 1.33872 0.92201 0.89851 0.91514 0.89600 0.90135 0.74904 0.89912 0.93573 0.82879 0.91630 0.89149 0.77208 0.91324 0.87936 0.92159 0.90863 0.89457 0.90279 0.87468 0.91209 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.37 71.98 0.67 -1.45 16 2 C 0.07 1.20 4.05 30.97 0.13 1.33 16 3 H 0.08 1.18 8.14 -2.38 -0.02 1.17 16 4 C -0.14 -2.65 6.02 31.58 0.19 -2.46 16 5 C -0.14 -2.83 3.52 -10.24 -0.04 -2.86 16 6 H 0.12 2.24 8.14 -2.39 -0.02 2.23 16 7 C 0.52 12.79 7.17 87.66 0.63 13.42 16 8 O -0.58 -18.80 15.51 -3.01 -0.05 -18.85 16 9 N -0.70 -14.84 5.39 -463.07 -2.50 -17.34 16 10 C 0.14 3.12 4.99 86.38 0.43 3.55 16 11 C 0.08 1.52 0.66 4.05 0.00 1.53 16 12 N -0.65 -18.01 6.00 -471.53 -2.83 -20.84 16 13 C 0.07 2.23 5.79 85.56 0.50 2.73 16 14 C 0.44 20.67 7.83 87.66 0.69 21.35 16 15 O -0.62 -33.30 15.83 -3.09 -0.05 -33.35 16 16 N -0.57 -29.64 5.29 -306.98 -1.62 -31.27 16 17 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 18 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 19 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 20 N -0.92 -50.29 13.05 21.66 0.28 -50.01 16 21 Si 0.99 43.06 29.55 68.60 2.03 45.09 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 C -0.17 -2.87 7.17 31.12 0.22 -2.65 16 26 C -0.14 -2.04 7.75 31.12 0.24 -1.79 16 27 C -0.12 -1.69 6.97 31.12 0.22 -1.47 16 28 C 0.07 1.05 7.12 72.66 0.52 1.56 16 29 O -0.39 -7.59 11.19 -148.98 -1.67 -9.26 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.60 7.70 -2.39 -0.02 1.58 16 34 H 0.08 1.80 6.94 -2.39 -0.02 1.78 16 35 H 0.41 7.50 8.25 -92.70 -0.76 6.74 16 36 H 0.08 1.62 8.02 -2.39 -0.02 1.60 16 37 H 0.05 1.26 6.52 -2.39 -0.02 1.25 16 38 H 0.35 10.22 7.68 -89.70 -0.69 9.53 16 39 H 0.07 1.98 6.71 -2.39 -0.02 1.97 16 40 H 0.09 3.02 6.49 -2.39 -0.02 3.01 16 41 H 0.39 19.59 7.90 -92.71 -0.73 18.86 16 42 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.10 1.47 8.02 -2.39 -0.02 1.45 16 44 H 0.06 1.21 6.71 -2.39 -0.02 1.20 16 45 H 0.07 1.24 7.73 -2.39 -0.02 1.22 16 46 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.11 1.18 8.10 -2.39 -0.02 1.17 16 49 H 0.07 1.05 8.04 -2.39 -0.02 1.03 16 50 H 0.12 1.43 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -71.47 402.13 -1.93 -73.40 By element: Atomic # 1 Polarization: 49.17 SS G_CDS: -1.21 Total: 47.97 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 5.68 Total: 14.45 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -6.67 Total: -119.46 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -1.76 Total: -61.46 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -71.47 -1.93 -73.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754990999.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.296 kcal (2) G-P(sol) polarization free energy of solvation -71.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds