Wall clock time and date at job start Tue Mar 31 2020 22:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47018 * 2 1 4 4 O 1.21285 * 120.00592 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00071 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.46937 * 35.00149 * 6 5 3 8 8 C 1.53003 * 109.47069 * 275.00104 * 6 5 3 9 9 C 1.50701 * 109.46815 * 155.00262 * 6 5 3 10 10 O 1.21272 * 120.00283 * 0.02562 * 9 6 5 11 11 N 1.34774 * 119.99670 * 179.97438 * 9 6 5 12 12 C 1.46498 * 120.00299 * 179.97438 * 11 9 6 13 13 C 1.53001 * 109.47453 * 180.02562 * 12 11 9 14 14 H 1.08992 * 110.52117 * 307.79644 * 13 12 11 15 15 C 1.55059 * 110.58161 * 184.99868 * 13 12 11 16 16 C 1.55030 * 102.12935 * 204.78112 * 15 13 12 17 17 C 1.53322 * 103.78366 * 20.86698 * 16 15 13 18 18 C 1.52652 * 115.56243 * 133.64213 * 17 16 15 19 19 N 1.47222 * 87.77949 * 90.04529 * 18 17 16 20 20 C 1.36932 * 135.96431 * 206.41651 * 19 18 17 21 21 H 1.08004 * 120.00066 * 6.79093 * 20 19 18 22 22 C 1.38808 * 119.99884 * 186.79269 * 20 19 18 23 23 N 1.31629 * 119.99858 * 172.34298 * 22 20 19 24 24 Si 1.86797 * 120.00274 * 352.34104 * 22 20 19 25 25 H 1.48502 * 109.47471 * 175.35206 * 24 22 20 26 26 H 1.48504 * 109.47042 * 55.35242 * 24 22 20 27 27 H 1.48501 * 109.47081 * 295.35483 * 24 22 20 28 28 C 1.47219 * 88.06699 * 26.66772 * 19 18 17 29 29 O 1.42842 * 108.32807 * 1.60437 * 17 16 15 30 30 H 1.09000 * 109.47253 * 59.99950 * 1 2 3 31 31 H 1.08994 * 109.47508 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47539 * 300.00429 * 1 2 3 33 33 H 1.08997 * 109.47089 * 239.99762 * 2 1 3 34 34 H 1.08997 * 109.46665 * 119.99604 * 2 1 3 35 35 H 0.96996 * 119.99775 * 0.02562 * 5 3 2 36 36 H 1.09008 * 109.46773 * 60.00177 * 8 6 5 37 37 H 1.08996 * 109.46998 * 179.97438 * 8 6 5 38 38 H 1.08995 * 109.47389 * 300.00317 * 8 6 5 39 39 H 0.97010 * 120.00048 * 0.02562 * 11 9 6 40 40 H 1.09008 * 109.46834 * 60.00005 * 12 11 9 41 41 H 1.09004 * 109.46721 * 300.00651 * 12 11 9 42 42 H 1.09008 * 110.87007 * 86.62571 * 15 13 12 43 43 H 1.08998 * 111.05506 * 323.02742 * 15 13 12 44 44 H 1.08993 * 110.56812 * 262.29252 * 16 15 13 45 45 H 1.08997 * 110.68568 * 139.49791 * 16 15 13 46 46 H 1.09002 * 113.50148 * 335.31600 * 18 17 16 47 47 H 1.09005 * 113.56183 * 204.78256 * 18 17 16 48 48 H 0.96991 * 120.00047 * 4.89162 * 23 22 20 49 49 H 1.09004 * 113.49685 * 88.06070 * 28 19 18 50 50 H 1.08993 * 113.49991 * 218.60291 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1729 3.6718 0.5887 8 6 3.8979 3.5702 -1.4374 9 6 5.2270 3.0929 0.6010 10 8 5.7519 2.0716 0.9910 11 7 5.8793 4.2678 0.7043 12 6 7.2218 4.3114 1.2891 13 6 7.7319 5.7539 1.2884 14 1 7.6469 6.1887 0.2926 15 6 9.1992 5.8134 1.7861 16 6 9.3031 7.2648 2.3209 17 6 7.8451 7.6667 2.5725 18 6 7.5709 8.3466 3.9115 19 7 7.8358 9.6335 3.2473 20 6 8.2757 10.8702 3.6371 21 1 8.6218 11.0264 4.6482 22 6 8.2768 11.9233 2.7327 23 7 8.5548 13.1427 3.1428 24 14 7.8837 11.6098 0.9336 25 1 7.8403 12.9024 0.2038 26 1 6.5650 10.9357 0.8252 27 1 8.9334 10.7421 0.3415 28 6 7.4145 9.0102 1.9818 29 8 7.0106 6.5518 2.2548 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.9877 0.9298 0.0005 36 1 2.8988 3.5379 -1.8721 37 1 4.2608 4.5980 -1.4377 38 1 4.5707 2.9467 -2.0261 39 1 5.4595 5.0847 0.3920 40 1 7.8947 3.6873 0.7009 41 1 7.1841 3.9401 2.3133 42 1 9.8953 5.6521 0.9629 43 1 9.3714 5.0920 2.5848 44 1 9.7564 7.9165 1.5740 45 1 9.8737 7.2932 3.2492 46 1 8.2996 8.0973 4.6828 47 1 6.5414 8.2374 4.2528 48 1 8.8280 13.2952 4.0609 49 1 6.3423 9.0808 1.7983 50 1 8.0113 9.3212 1.1244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755054299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:09 Heat of formation + Delta-G solvation = -61.411544 kcal Electronic energy + Delta-G solvation = -29725.791270 eV Core-core repulsion = 25562.051575 eV Total energy + Delta-G solvation = -4163.739695 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.78881 -40.26505 -39.42920 -37.08820 -35.40684 -34.89355 -33.27338 -32.38963 -32.13622 -31.12546 -29.35061 -27.19615 -25.62805 -25.57642 -24.42541 -23.19804 -21.61889 -21.35153 -20.69121 -20.49556 -19.20526 -18.24585 -17.52517 -17.22853 -16.71506 -16.41274 -16.12084 -15.81855 -15.71450 -15.22264 -14.84732 -14.67020 -14.31608 -14.01581 -13.88029 -13.77055 -13.33824 -13.17925 -13.14761 -12.91092 -12.77549 -12.56528 -12.40740 -12.13603 -12.11760 -12.01836 -11.64569 -11.55402 -11.49257 -11.30578 -11.13282 -10.74411 -10.48028 -10.38688 -10.27193 -10.17264 -9.91230 -9.54657 -9.39424 -9.26305 -8.91684 -8.87048 -7.21037 -6.37543 -3.28551 2.19327 2.29068 2.47755 3.05624 3.34196 3.39499 3.60145 3.73012 4.20772 4.37798 4.50102 4.54233 4.60290 4.62180 4.67203 4.70801 4.75888 4.79145 4.82336 4.90126 5.05495 5.09527 5.19934 5.29094 5.34718 5.35925 5.40946 5.42806 5.50437 5.54344 5.69351 5.72547 5.81277 5.83065 5.97946 6.05593 6.09944 6.16490 6.16905 6.25758 6.27587 6.32508 6.49990 7.01729 7.09982 7.12089 7.24094 7.78893 7.85892 8.18360 8.92145 9.44027 10.29395 11.15351 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.002141 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.784459 B =13074.588244 C =13744.971377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.539 6.539 5 N -0.715 5.715 6 C 0.123 3.877 7 H 0.116 0.884 8 C -0.159 4.159 9 C 0.513 3.487 10 O -0.542 6.542 11 N -0.716 5.716 12 C 0.129 3.871 13 C 0.060 3.940 14 H 0.077 0.923 15 C -0.145 4.145 16 C -0.114 4.114 17 C 0.060 3.940 18 C 0.133 3.867 19 N -0.619 5.619 20 C -0.303 4.303 21 H 0.084 0.916 22 C -0.024 4.024 23 N -0.932 5.932 24 Si 1.070 2.930 25 H -0.294 1.294 26 H -0.286 1.286 27 H -0.294 1.294 28 C 0.090 3.910 29 O -0.355 6.355 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.410 0.590 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.408 0.592 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.261 0.739 49 H 0.052 0.948 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.183 -27.588 -9.907 30.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.416 6.416 5 N -0.370 5.370 6 C 0.015 3.985 7 H 0.134 0.866 8 C -0.218 4.218 9 C 0.298 3.702 10 O -0.419 6.419 11 N -0.368 5.368 12 C 0.005 3.995 13 C 0.002 3.998 14 H 0.095 0.905 15 C -0.183 4.183 16 C -0.151 4.151 17 C 0.019 3.981 18 C 0.007 3.993 19 N -0.350 5.350 20 C -0.429 4.429 21 H 0.102 0.898 22 C -0.223 4.223 23 N -0.574 5.574 24 Si 0.903 3.097 25 H -0.221 1.221 26 H -0.213 1.213 27 H -0.223 1.223 28 C -0.036 4.036 29 O -0.273 6.273 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.246 0.754 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.243 0.757 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.699 -26.693 -10.894 29.841 hybrid contribution 0.570 -0.515 1.384 1.583 sum -7.129 -27.208 -9.510 29.690 Atomic orbital electron populations 1.21537 0.92826 1.01690 1.03469 1.21622 0.98736 0.93350 1.04586 1.20856 0.81615 0.92171 0.75266 1.90723 1.55215 1.46480 1.49167 1.45819 1.07601 1.07801 1.75751 1.20760 0.93375 0.85792 0.98605 0.86592 1.22138 1.03821 1.01635 0.94205 1.20537 0.87273 0.83747 0.78655 1.90692 1.68388 1.33554 1.49279 1.45886 1.18269 1.09836 1.62816 1.21479 0.82813 0.95292 0.99873 1.23370 0.91713 0.90664 0.94031 0.90503 1.23138 0.95536 0.98126 1.01542 1.22387 0.95325 0.94671 1.02749 1.23709 0.89736 0.85461 0.99161 1.22365 0.98932 0.85140 0.92910 1.45705 1.76537 1.08834 1.03895 1.20089 1.40436 0.83450 0.98894 0.89793 1.25744 1.00026 0.91525 1.04997 1.70923 1.48020 1.18730 1.19735 0.83693 0.76204 0.74174 0.75610 1.22148 1.21259 1.22282 1.23196 0.98628 0.89840 0.91936 1.88777 1.41596 1.36990 1.59960 0.91930 0.91988 0.91891 0.88787 0.88693 0.75350 0.90659 0.90721 0.91731 0.75661 0.89918 0.90274 0.90046 0.90188 0.90104 0.89884 0.93168 0.93642 0.92848 0.93071 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.20 37.16 0.34 -0.51 16 2 C -0.14 -0.81 6.42 -27.89 -0.18 -0.99 16 3 C 0.51 4.67 7.79 -10.98 -0.09 4.58 16 4 O -0.54 -6.89 15.65 5.55 0.09 -6.80 16 5 N -0.72 -5.90 4.95 -54.93 -0.27 -6.18 16 6 C 0.12 1.07 2.99 -69.08 -0.21 0.87 16 7 H 0.12 1.12 7.58 -51.93 -0.39 0.73 16 8 C -0.16 -1.12 9.38 37.16 0.35 -0.77 16 9 C 0.51 5.19 7.22 -10.99 -0.08 5.11 16 10 O -0.54 -6.94 15.84 5.56 0.09 -6.85 16 11 N -0.72 -6.64 5.45 -60.29 -0.33 -6.97 16 12 C 0.13 1.27 5.42 -4.04 -0.02 1.24 16 13 C 0.06 0.67 3.38 -25.64 -0.09 0.58 16 14 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 15 C -0.15 -1.55 6.60 -24.57 -0.16 -1.71 16 16 C -0.11 -1.66 6.46 -25.49 -0.16 -1.83 16 17 C 0.06 1.04 1.66 -90.66 -0.15 0.89 16 18 C 0.13 2.67 8.20 -8.03 -0.07 2.60 16 19 N -0.62 -15.11 3.66 -184.61 -0.68 -15.78 16 20 C -0.30 -8.64 11.08 -15.06 -0.17 -8.81 16 21 H 0.08 2.52 8.05 -52.48 -0.42 2.09 16 22 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 23 N -0.93 -29.19 13.70 55.49 0.76 -28.43 16 24 Si 1.07 26.45 25.13 -169.99 -4.27 22.17 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -6.62 6.11 56.52 0.35 -6.28 16 27 H -0.29 -6.77 6.63 56.52 0.37 -6.39 16 28 C 0.09 1.89 5.22 -7.88 -0.04 1.84 16 29 O -0.36 -5.33 11.03 -35.23 -0.39 -5.72 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.47 8.10 -51.92 -0.42 0.05 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.41 2.94 7.79 -40.82 -0.32 2.62 16 36 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 37 H 0.07 0.43 7.56 -51.93 -0.39 0.04 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.41 3.28 7.89 -40.82 -0.32 2.96 16 40 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.71 8.14 -51.92 -0.42 0.28 16 43 H 0.08 0.78 8.06 -51.93 -0.42 0.37 16 44 H 0.08 1.25 7.82 -51.93 -0.41 0.84 16 45 H 0.08 1.22 7.81 -51.93 -0.41 0.81 16 46 H 0.05 0.95 7.91 -51.93 -0.41 0.54 16 47 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.26 8.08 8.73 -40.82 -0.36 7.73 16 49 H 0.05 1.09 7.69 -51.93 -0.40 0.69 16 50 H 0.05 1.09 4.50 -51.93 -0.23 0.86 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -35.52 400.78 -8.20 -43.72 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.43 Total: 2.49 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -0.82 Total: 2.31 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.52 Total: -57.36 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.21 Total: -19.37 kcal Atomic # 14 Polarization: 26.45 SS G_CDS: -4.27 Total: 22.17 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.52 -8.20 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.690 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds