Wall clock time and date at job start Tue Mar 31 2020 22:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.47018 * 2 1 4 4 O 1.21285 * 120.00592 * 359.97438 * 3 2 1 5 5 N 1.34782 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.46503 * 120.00071 * 179.97438 * 5 3 2 7 7 H 1.09000 * 109.46937 * 35.00149 * 6 5 3 8 8 C 1.53003 * 109.47069 * 275.00104 * 6 5 3 9 9 C 1.50701 * 109.46815 * 155.00262 * 6 5 3 10 10 O 1.21272 * 120.00283 * 0.02562 * 9 6 5 11 11 N 1.34774 * 119.99670 * 179.97438 * 9 6 5 12 12 C 1.46498 * 120.00299 * 179.97438 * 11 9 6 13 13 C 1.53001 * 109.47453 * 180.02562 * 12 11 9 14 14 H 1.08992 * 110.52117 * 307.79644 * 13 12 11 15 15 C 1.55059 * 110.58161 * 184.99868 * 13 12 11 16 16 C 1.55030 * 102.12935 * 204.78112 * 15 13 12 17 17 C 1.53322 * 103.78366 * 20.86698 * 16 15 13 18 18 C 1.52652 * 115.56243 * 133.64213 * 17 16 15 19 19 N 1.47222 * 87.77949 * 90.04529 * 18 17 16 20 20 C 1.36932 * 135.96431 * 206.41651 * 19 18 17 21 21 H 1.08004 * 120.00066 * 6.79093 * 20 19 18 22 22 C 1.38808 * 119.99884 * 186.79269 * 20 19 18 23 23 N 1.31629 * 119.99858 * 172.34298 * 22 20 19 24 24 Si 1.86797 * 120.00274 * 352.34104 * 22 20 19 25 25 H 1.48502 * 109.47471 * 175.35206 * 24 22 20 26 26 H 1.48504 * 109.47042 * 55.35242 * 24 22 20 27 27 H 1.48501 * 109.47081 * 295.35483 * 24 22 20 28 28 C 1.47219 * 88.06699 * 26.66772 * 19 18 17 29 29 O 1.42842 * 108.32807 * 1.60437 * 17 16 15 30 30 H 1.09000 * 109.47253 * 59.99950 * 1 2 3 31 31 H 1.08994 * 109.47508 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47539 * 300.00429 * 1 2 3 33 33 H 1.08997 * 109.47089 * 239.99762 * 2 1 3 34 34 H 1.08997 * 109.46665 * 119.99604 * 2 1 3 35 35 H 0.96996 * 119.99775 * 0.02562 * 5 3 2 36 36 H 1.09008 * 109.46773 * 60.00177 * 8 6 5 37 37 H 1.08996 * 109.46998 * 179.97438 * 8 6 5 38 38 H 1.08995 * 109.47389 * 300.00317 * 8 6 5 39 39 H 0.97010 * 120.00048 * 0.02562 * 11 9 6 40 40 H 1.09008 * 109.46834 * 60.00005 * 12 11 9 41 41 H 1.09004 * 109.46721 * 300.00651 * 12 11 9 42 42 H 1.09008 * 110.87007 * 86.62571 * 15 13 12 43 43 H 1.08998 * 111.05506 * 323.02742 * 15 13 12 44 44 H 1.08993 * 110.56812 * 262.29252 * 16 15 13 45 45 H 1.08997 * 110.68568 * 139.49791 * 16 15 13 46 46 H 1.09002 * 113.50148 * 335.31600 * 18 17 16 47 47 H 1.09005 * 113.56183 * 204.78256 * 18 17 16 48 48 H 0.96991 * 120.00047 * 4.89162 * 23 22 20 49 49 H 1.09004 * 113.49685 * 88.06070 * 28 19 18 50 50 H 1.08993 * 113.49991 * 218.60291 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3427 -0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0483 0.0000 7 1 3.1729 3.6718 0.5887 8 6 3.8979 3.5702 -1.4374 9 6 5.2270 3.0929 0.6010 10 8 5.7519 2.0716 0.9910 11 7 5.8793 4.2678 0.7043 12 6 7.2218 4.3114 1.2891 13 6 7.7319 5.7539 1.2884 14 1 7.6469 6.1887 0.2926 15 6 9.1992 5.8134 1.7861 16 6 9.3031 7.2648 2.3209 17 6 7.8451 7.6667 2.5725 18 6 7.5709 8.3466 3.9115 19 7 7.8358 9.6335 3.2473 20 6 8.2757 10.8702 3.6371 21 1 8.6218 11.0264 4.6482 22 6 8.2768 11.9233 2.7327 23 7 8.5548 13.1427 3.1428 24 14 7.8837 11.6098 0.9336 25 1 7.8403 12.9024 0.2038 26 1 6.5650 10.9357 0.8252 27 1 8.9334 10.7421 0.3415 28 6 7.4145 9.0102 1.9818 29 8 7.0106 6.5518 2.2548 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 3.9877 0.9298 0.0005 36 1 2.8988 3.5379 -1.8721 37 1 4.2608 4.5980 -1.4377 38 1 4.5707 2.9467 -2.0261 39 1 5.4595 5.0847 0.3920 40 1 7.8947 3.6873 0.7009 41 1 7.1841 3.9401 2.3133 42 1 9.8953 5.6521 0.9629 43 1 9.3714 5.0920 2.5848 44 1 9.7564 7.9165 1.5740 45 1 9.8737 7.2932 3.2492 46 1 8.2996 8.0973 4.6828 47 1 6.5414 8.2374 4.2528 48 1 8.8280 13.2952 4.0609 49 1 6.3423 9.0808 1.7983 50 1 8.0113 9.3212 1.1244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755054299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:08 Heat of formation + Delta-G solvation = -89.727550 kcal Electronic energy + Delta-G solvation = -29727.019145 eV Core-core repulsion = 25562.051575 eV Total energy + Delta-G solvation = -4164.967570 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72747 -41.37940 -40.24006 -38.45213 -36.15413 -35.82245 -34.50954 -33.83068 -33.15189 -31.88382 -30.58231 -28.73774 -27.23210 -26.29033 -25.35765 -24.07113 -23.14098 -22.38210 -21.37695 -21.26383 -20.77979 -19.52685 -18.94171 -18.03573 -17.62656 -17.49736 -17.18828 -16.84400 -16.43517 -16.27474 -16.08423 -16.02367 -15.37196 -15.12785 -15.01652 -14.77207 -14.53726 -14.44758 -14.22437 -13.75071 -13.57099 -13.44479 -13.37330 -13.20038 -13.07357 -12.73260 -12.67088 -12.66941 -12.63150 -12.40556 -12.23917 -12.03050 -12.02114 -11.73470 -11.43966 -11.33692 -11.06345 -11.03680 -10.92368 -10.34133 -10.27403 -10.15623 -9.25352 -8.69428 -5.51703 1.35827 1.42738 1.46864 1.58937 1.66407 1.79335 2.37518 2.51979 2.57881 2.95932 3.22793 3.39943 3.49099 3.59321 3.65249 3.80107 3.91645 4.00325 4.08283 4.12098 4.23013 4.28537 4.39134 4.41291 4.47642 4.59017 4.61358 4.62150 4.67753 4.72136 4.80562 4.82077 4.83399 4.91905 4.99284 5.00647 5.06993 5.10139 5.12275 5.15169 5.23676 5.27157 5.31999 5.39741 5.90458 6.01204 6.37173 6.47712 6.65340 7.03435 7.19879 7.27256 8.21120 8.86398 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018204 B = 0.002141 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.784459 B =13074.588244 C =13744.971377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.138 4.138 3 C 0.509 3.491 4 O -0.583 6.583 5 N -0.710 5.710 6 C 0.124 3.876 7 H 0.104 0.896 8 C -0.152 4.152 9 C 0.517 3.483 10 O -0.569 6.569 11 N -0.711 5.711 12 C 0.135 3.865 13 C 0.058 3.942 14 H 0.095 0.905 15 C -0.132 4.132 16 C -0.118 4.118 17 C 0.088 3.912 18 C 0.124 3.876 19 N -0.648 5.648 20 C -0.291 4.291 21 H 0.052 0.948 22 C -0.083 4.083 23 N -0.967 5.967 24 Si 1.107 2.893 25 H -0.304 1.304 26 H -0.263 1.263 27 H -0.264 1.264 28 C 0.082 3.918 29 O -0.364 6.364 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.120 0.880 34 H 0.113 0.887 35 H 0.417 0.583 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.415 0.585 40 H 0.102 0.898 41 H 0.066 0.934 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.247 0.753 49 H 0.050 0.950 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.817 -30.940 -12.163 33.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.177 4.177 3 C 0.297 3.703 4 O -0.463 6.463 5 N -0.364 5.364 6 C 0.015 3.985 7 H 0.122 0.878 8 C -0.211 4.211 9 C 0.303 3.697 10 O -0.448 6.448 11 N -0.363 5.363 12 C 0.011 3.989 13 C 0.001 3.999 14 H 0.113 0.887 15 C -0.170 4.170 16 C -0.156 4.156 17 C 0.046 3.954 18 C -0.001 4.001 19 N -0.379 5.379 20 C -0.418 4.418 21 H 0.070 0.930 22 C -0.275 4.275 23 N -0.613 5.613 24 Si 0.933 3.067 25 H -0.232 1.232 26 H -0.189 1.189 27 H -0.191 1.191 28 C -0.043 4.043 29 O -0.282 6.282 30 H 0.068 0.932 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.255 0.745 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.252 0.748 40 H 0.120 0.880 41 H 0.084 0.916 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.074 0.926 47 H 0.063 0.937 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.321 -30.112 -13.139 33.660 hybrid contribution 0.431 0.444 2.210 2.295 sum -6.890 -29.668 -10.929 32.359 Atomic orbital electron populations 1.21543 0.93436 1.02662 1.01907 1.21693 0.98116 0.91237 1.06666 1.21520 0.81385 0.93206 0.74153 1.90703 1.56206 1.48058 1.51314 1.45841 1.07616 1.07904 1.75081 1.20756 0.92251 0.86086 0.99428 0.87840 1.22090 1.03495 1.02615 0.92865 1.20667 0.87450 0.83485 0.78130 1.90681 1.69103 1.34487 1.50549 1.45866 1.18204 1.09938 1.62291 1.21435 0.83296 0.94547 0.99608 1.23635 0.91711 0.90746 0.93827 0.88735 1.23137 0.95683 0.95393 1.02814 1.22419 0.93097 0.97301 1.02741 1.23164 0.91481 0.84963 0.95754 1.22548 0.98971 0.83705 0.94898 1.45723 1.76835 1.08618 1.06688 1.19937 1.38782 0.85622 0.97435 0.93035 1.27115 1.00336 0.91042 1.09025 1.71031 1.50943 1.20322 1.18964 0.83292 0.78006 0.74378 0.71036 1.23227 1.18871 1.19053 1.23374 0.98493 0.91737 0.90718 1.88766 1.41930 1.36366 1.61133 0.93246 0.89671 0.93752 0.86147 0.86894 0.74540 0.91675 0.89279 0.90868 0.74833 0.87962 0.91593 0.87067 0.89047 0.90619 0.90292 0.92561 0.93706 0.94424 0.93200 0.92659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.20 71.98 0.66 -0.91 16 2 C -0.14 -1.28 6.42 29.85 0.19 -1.09 16 3 C 0.51 8.78 7.79 87.65 0.68 9.46 16 4 O -0.58 -14.98 15.65 -3.04 -0.05 -15.03 16 5 N -0.71 -10.73 4.95 -446.08 -2.21 -12.94 16 6 C 0.12 1.98 2.99 44.25 0.13 2.11 16 7 H 0.10 1.95 7.58 -2.39 -0.02 1.93 16 8 C -0.15 -1.84 9.38 71.98 0.68 -1.16 16 9 C 0.52 9.35 7.22 87.66 0.63 9.98 16 10 O -0.57 -13.37 15.84 -3.00 -0.05 -13.41 16 11 N -0.71 -11.12 5.45 -463.06 -2.52 -13.64 16 12 C 0.13 2.15 5.42 86.38 0.47 2.62 16 13 C 0.06 1.05 3.38 31.30 0.11 1.15 16 14 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 15 C -0.13 -2.23 6.60 31.99 0.21 -2.02 16 16 C -0.12 -3.09 6.46 31.40 0.20 -2.89 16 17 C 0.09 2.81 1.66 -10.82 -0.02 2.79 16 18 C 0.12 4.89 8.20 83.40 0.68 5.57 16 19 N -0.65 -31.40 3.66 -739.09 -2.70 -34.10 16 20 C -0.29 -16.96 11.08 84.03 0.93 -16.03 16 21 H 0.05 3.25 8.05 -2.91 -0.02 3.23 16 22 C -0.08 -4.99 5.50 84.86 0.47 -4.52 16 23 N -0.97 -62.60 13.70 21.65 0.30 -62.30 16 24 Si 1.11 52.69 25.13 68.60 1.72 54.42 16 25 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 26 H -0.26 -11.44 6.11 99.48 0.61 -10.83 16 27 H -0.26 -11.17 6.63 99.48 0.66 -10.51 16 28 C 0.08 3.26 5.22 83.50 0.44 3.70 16 29 O -0.36 -9.80 11.03 -148.98 -1.64 -11.45 16 30 H 0.05 0.68 8.10 -2.39 -0.02 0.66 16 31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.66 8.10 -2.38 -0.02 0.64 16 33 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.42 5.19 7.79 -92.71 -0.72 4.46 16 36 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.09 0.80 7.56 -2.39 -0.02 0.78 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.42 5.41 7.89 -92.70 -0.73 4.68 16 40 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 42 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.09 1.38 8.06 -2.39 -0.02 1.36 16 44 H 0.08 2.09 7.82 -2.39 -0.02 2.07 16 45 H 0.08 2.14 7.81 -2.39 -0.02 2.13 16 46 H 0.06 2.11 7.91 -2.39 -0.02 2.09 16 47 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.25 16.03 8.73 -92.72 -0.81 15.22 16 49 H 0.05 2.01 7.69 -2.38 -0.02 2.00 16 50 H 0.06 2.17 4.50 -2.39 -0.01 2.16 16 Total: -1.00 -80.01 400.78 -1.37 -81.38 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -0.69 Total: 18.31 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 6.46 Total: 8.76 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -7.14 Total: -122.99 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -1.74 Total: -39.89 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 1.72 Total: 54.42 kcal Total: -80.01 -1.37 -81.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.349 kcal (2) G-P(sol) polarization free energy of solvation -80.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds