Wall clock time and date at job start Tue Mar 31 2020 22:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47199 * 2 1 4 4 O 1.21285 * 119.99993 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00087 * 179.97438 * 3 2 1 6 6 C 1.46492 * 120.00341 * 180.02562 * 5 3 2 7 7 H 1.09007 * 109.46961 * 325.00185 * 6 5 3 8 8 C 1.52998 * 109.47284 * 84.99842 * 6 5 3 9 9 C 1.50699 * 109.47495 * 205.00103 * 6 5 3 10 10 O 1.21283 * 119.99640 * 359.97438 * 9 6 5 11 11 N 1.34776 * 120.00218 * 179.97438 * 9 6 5 12 12 C 1.46504 * 119.99868 * 179.97438 * 11 9 6 13 13 C 1.53003 * 109.46734 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.90014 * 59.48834 * 13 12 11 15 15 C 1.54473 * 109.82812 * 180.42482 * 13 12 11 16 16 C 1.55510 * 102.38818 * 140.87746 * 15 13 12 17 17 C 1.53881 * 100.75539 * 327.03171 * 16 15 13 18 18 C 1.52377 * 115.67709 * 263.23108 * 17 16 15 19 19 N 1.47275 * 87.70343 * 218.74807 * 18 17 16 20 20 C 1.36935 * 135.93442 * 206.17406 * 19 18 17 21 21 H 1.08006 * 120.00018 * 7.56890 * 20 19 18 22 22 C 1.38818 * 120.00126 * 187.55930 * 20 19 18 23 23 N 1.31612 * 119.99984 * 174.51404 * 22 20 19 24 24 Si 1.86797 * 119.99618 * 354.51503 * 22 20 19 25 25 H 1.48497 * 109.46833 * 174.94589 * 24 22 20 26 26 H 1.48497 * 109.47523 * 294.94736 * 24 22 20 27 27 H 1.48508 * 109.47271 * 54.94852 * 24 22 20 28 28 C 1.47274 * 88.12736 * 26.43491 * 19 18 17 29 29 O 1.42402 * 106.67424 * 34.97284 * 17 16 15 30 30 H 1.09001 * 109.47171 * 59.99957 * 1 2 3 31 31 H 1.09000 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47053 * 299.99940 * 1 2 3 33 33 H 1.08998 * 109.47053 * 240.00060 * 2 1 3 34 34 H 1.08998 * 109.47099 * 120.00576 * 2 1 3 35 35 H 0.97007 * 119.99712 * 0.02562 * 5 3 2 36 36 H 1.08998 * 109.47392 * 60.00423 * 8 6 5 37 37 H 1.09000 * 109.47464 * 180.02562 * 8 6 5 38 38 H 1.08998 * 109.47484 * 300.00087 * 8 6 5 39 39 H 0.97001 * 120.00019 * 0.02562 * 11 9 6 40 40 H 1.08999 * 109.46998 * 60.00501 * 12 11 9 41 41 H 1.08997 * 109.47459 * 300.00487 * 12 11 9 42 42 H 1.09001 * 110.82679 * 259.09880 * 15 13 12 43 43 H 1.09004 * 110.82915 * 22.45718 * 15 13 12 44 44 H 1.09002 * 111.16142 * 209.15506 * 16 15 13 45 45 H 1.09003 * 111.15706 * 84.90239 * 16 15 13 46 46 H 1.08996 * 113.51643 * 104.03947 * 18 17 16 47 47 H 1.09006 * 113.51474 * 333.45290 * 18 17 16 48 48 H 0.96998 * 120.00657 * 354.90781 * 23 22 20 49 49 H 1.08999 * 113.51507 * 88.27374 * 28 19 18 50 50 H 1.08997 * 113.50859 * 218.85232 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.1734 3.6716 -0.5884 8 6 3.8968 3.5705 1.4382 9 6 5.2275 3.0927 -0.5989 10 8 5.7527 2.0712 -0.9882 11 7 5.8795 4.2677 -0.7029 12 6 7.2229 4.3109 -1.2857 13 6 7.7329 5.7534 -1.2851 14 1 7.7630 6.1359 -0.2649 15 6 9.1453 5.8101 -1.9080 16 6 9.0920 7.1250 -2.7366 17 6 7.6146 7.1337 -3.1667 18 6 7.3284 6.5797 -4.5570 19 7 6.3296 7.6507 -4.7135 20 6 5.1832 7.8283 -5.4410 21 1 4.7673 7.0051 -6.0031 22 6 4.5555 9.0664 -5.4561 23 7 3.5168 9.2681 -6.2388 24 14 5.1852 10.4460 -4.3654 25 1 4.4278 11.6902 -4.6543 26 1 5.0003 10.0737 -2.9398 27 1 6.6281 10.6710 -4.6351 28 6 7.1063 8.4495 -3.7504 29 8 6.8717 6.5747 -2.0880 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.9878 0.9297 0.0005 36 1 4.5691 2.9473 2.0278 37 1 4.2597 4.5983 1.4386 38 1 2.8975 3.5384 1.8722 39 1 5.4595 5.0847 -0.3912 40 1 7.1870 3.9382 -2.3093 41 1 7.8952 3.6880 -0.6956 42 1 9.9087 5.8716 -1.1324 43 1 9.3193 4.9488 -2.5531 44 1 9.7534 7.0721 -3.6015 45 1 9.3265 7.9904 -2.1167 46 1 6.8954 5.5795 -4.5460 47 1 8.1715 6.6679 -5.2424 48 1 3.2351 8.5773 -6.8587 49 1 7.8884 9.0503 -4.2145 50 1 6.4864 9.0224 -3.0608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755054300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:12 Heat of formation + Delta-G solvation = -58.478168 kcal Electronic energy + Delta-G solvation = -30290.636939 eV Core-core repulsion = 26127.024444 eV Total energy + Delta-G solvation = -4163.612495 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67461 -40.25460 -39.25848 -36.98172 -35.24426 -34.68995 -33.13031 -32.38776 -32.15592 -31.02149 -29.39255 -27.10443 -25.57971 -25.45266 -24.37136 -23.15482 -21.63518 -21.13462 -20.52832 -20.32175 -19.34327 -18.11107 -17.42330 -17.08181 -16.68989 -16.34900 -15.95601 -15.81086 -15.53272 -15.19155 -14.66303 -14.33513 -14.23480 -13.85854 -13.77723 -13.69868 -13.28075 -13.16846 -13.07750 -12.84787 -12.73093 -12.52754 -12.41530 -12.21462 -11.99850 -11.85967 -11.78019 -11.65982 -11.44991 -11.41726 -10.84874 -10.63994 -10.44493 -10.37640 -10.11199 -10.01325 -9.57977 -9.38442 -9.22090 -9.09631 -8.91041 -8.86441 -7.14288 -6.25390 -3.18606 2.35726 2.46412 2.64166 3.20580 3.41162 3.46626 3.65591 3.78295 4.35681 4.42254 4.53534 4.56854 4.63181 4.71739 4.75351 4.80498 4.85221 4.86715 4.92952 4.94983 5.08256 5.22805 5.28438 5.32880 5.41100 5.47334 5.49941 5.52139 5.56202 5.65856 5.67795 5.80768 5.83557 5.90475 5.96949 6.01538 6.13581 6.14726 6.20304 6.22580 6.29250 6.38284 6.50395 7.12766 7.26401 7.30109 7.40889 7.96909 8.02413 8.27594 9.01432 9.53520 10.38633 11.24851 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.002975 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.886965 B = 9409.721179 C =11183.906814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.513 3.487 4 O -0.538 6.538 5 N -0.715 5.715 6 C 0.122 3.878 7 H 0.118 0.882 8 C -0.157 4.157 9 C 0.514 3.486 10 O -0.545 6.545 11 N -0.712 5.712 12 C 0.113 3.887 13 C 0.063 3.937 14 H 0.086 0.914 15 C -0.143 4.143 16 C -0.139 4.139 17 C 0.071 3.929 18 C 0.110 3.890 19 N -0.621 5.621 20 C -0.300 4.300 21 H 0.082 0.918 22 C -0.025 4.025 23 N -0.935 5.935 24 Si 1.070 2.930 25 H -0.295 1.295 26 H -0.291 1.291 27 H -0.288 1.288 28 C 0.102 3.898 29 O -0.332 6.332 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.409 0.591 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.409 0.591 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.046 0.954 48 H 0.260 0.740 49 H 0.059 0.941 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.407 -15.525 17.917 25.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.300 3.700 4 O -0.414 6.414 5 N -0.369 5.369 6 C 0.014 3.986 7 H 0.135 0.865 8 C -0.216 4.216 9 C 0.299 3.701 10 O -0.422 6.422 11 N -0.363 5.363 12 C -0.010 4.010 13 C 0.005 3.995 14 H 0.103 0.897 15 C -0.182 4.182 16 C -0.177 4.177 17 C 0.030 3.970 18 C -0.017 4.017 19 N -0.348 5.348 20 C -0.426 4.426 21 H 0.099 0.901 22 C -0.224 4.224 23 N -0.578 5.578 24 Si 0.903 3.097 25 H -0.222 1.222 26 H -0.219 1.219 27 H -0.215 1.215 28 C -0.024 4.024 29 O -0.251 6.251 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.246 0.754 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.244 0.756 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.447 -13.966 17.978 23.952 hybrid contribution 0.744 -1.611 -0.579 1.866 sum 8.191 -15.577 17.398 24.747 Atomic orbital electron populations 1.21539 0.92846 1.01618 1.03526 1.21618 0.98729 0.93389 1.04501 1.20849 0.81654 0.92158 0.75367 1.90733 1.55184 1.46464 1.49017 1.45798 1.07567 1.07781 1.75779 1.20761 0.93521 0.85784 0.98562 0.86466 1.22118 1.03708 1.01530 0.94250 1.20522 0.87216 0.83770 0.78630 1.90679 1.68420 1.33630 1.49507 1.45778 1.18111 1.09780 1.62633 1.21836 0.83043 0.96530 0.99640 1.23095 0.90294 0.89997 0.96151 0.89662 1.23063 0.95782 0.99215 1.00094 1.23006 0.96876 0.97361 1.00485 1.23171 0.88413 0.97154 0.88271 1.22698 0.92369 0.94504 0.92147 1.45894 1.22979 1.15006 1.50967 1.20130 0.98910 0.98130 1.25404 0.90061 1.25709 0.97208 0.97868 1.01600 1.70903 1.26846 1.36282 1.23748 0.83727 0.74839 0.75943 0.75220 1.22237 1.21913 1.21532 1.22855 0.94746 0.93383 0.91392 1.88367 1.33788 1.63855 1.39041 0.91814 0.92041 0.91954 0.88713 0.88873 0.75442 0.91871 0.90784 0.90704 0.75570 0.90740 0.90524 0.89946 0.90089 0.89500 0.90104 0.93414 0.93632 0.92971 0.92401 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 2 C -0.14 -1.08 6.42 -27.88 -0.18 -1.25 16 3 C 0.51 5.82 7.79 -10.99 -0.09 5.73 16 4 O -0.54 -8.21 15.65 5.55 0.09 -8.12 16 5 N -0.72 -7.52 4.95 -54.94 -0.27 -7.79 16 6 C 0.12 1.38 2.98 -69.09 -0.21 1.17 16 7 H 0.12 1.54 7.58 -51.93 -0.39 1.14 16 8 C -0.16 -1.39 9.38 37.16 0.35 -1.05 16 9 C 0.51 6.51 7.22 -10.99 -0.08 6.43 16 10 O -0.54 -8.23 15.84 5.55 0.09 -8.14 16 11 N -0.71 -8.39 5.36 -60.29 -0.32 -8.71 16 12 C 0.11 1.31 5.23 -4.04 -0.02 1.29 16 13 C 0.06 0.72 3.62 -25.96 -0.09 0.63 16 14 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.14 -1.37 6.56 -24.62 -0.16 -1.53 16 16 C -0.14 -1.64 6.49 -24.94 -0.16 -1.80 16 17 C 0.07 1.21 1.56 -90.66 -0.14 1.07 16 18 C 0.11 2.19 8.24 -7.88 -0.06 2.12 16 19 N -0.62 -15.70 3.70 -184.80 -0.68 -16.38 16 20 C -0.30 -8.95 11.08 -15.06 -0.17 -9.11 16 21 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16 22 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 23 N -0.94 -30.33 13.70 55.49 0.76 -29.57 16 24 Si 1.07 27.32 25.17 -169.99 -4.28 23.04 16 25 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 26 H -0.29 -7.10 6.49 56.52 0.37 -6.74 16 27 H -0.29 -6.73 6.18 56.52 0.35 -6.38 16 28 C 0.10 2.15 5.25 -7.73 -0.04 2.11 16 29 O -0.33 -5.56 10.69 -35.23 -0.38 -5.94 16 30 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.41 3.76 7.79 -40.82 -0.32 3.44 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.56 7.57 -51.93 -0.39 0.17 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.41 4.45 7.82 -40.82 -0.32 4.13 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.74 7.85 -51.93 -0.41 0.34 16 44 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.05 0.84 7.99 -51.93 -0.41 0.42 16 48 H 0.26 8.36 8.73 -40.82 -0.36 8.00 16 49 H 0.06 1.15 7.59 -51.93 -0.39 0.76 16 50 H 0.06 1.37 4.80 -51.93 -0.25 1.12 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -37.98 400.81 -8.22 -46.20 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.45 Total: 5.21 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -0.81 Total: 4.17 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.52 Total: -62.47 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.20 Total: -22.21 kcal Atomic # 14 Polarization: 27.32 SS G_CDS: -4.28 Total: 23.04 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.98 -8.22 -46.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.275 kcal (2) G-P(sol) polarization free energy of solvation -37.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds