Wall clock time and date at job start Tue Mar 31 2020 22:58:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50699 * 109.47199 * 2 1
4 4 O 1.21285 * 119.99993 * 0.02562 * 3 2 1
5 5 N 1.34774 * 120.00087 * 179.97438 * 3 2 1
6 6 C 1.46492 * 120.00341 * 180.02562 * 5 3 2
7 7 H 1.09007 * 109.46961 * 325.00185 * 6 5 3
8 8 C 1.52998 * 109.47284 * 84.99842 * 6 5 3
9 9 C 1.50699 * 109.47495 * 205.00103 * 6 5 3
10 10 O 1.21283 * 119.99640 * 359.97438 * 9 6 5
11 11 N 1.34776 * 120.00218 * 179.97438 * 9 6 5
12 12 C 1.46504 * 119.99868 * 179.97438 * 11 9 6
13 13 C 1.53003 * 109.46734 * 180.02562 * 12 11 9
14 14 H 1.08998 * 109.90014 * 59.48834 * 13 12 11
15 15 C 1.54473 * 109.82812 * 180.42482 * 13 12 11
16 16 C 1.55510 * 102.38818 * 140.87746 * 15 13 12
17 17 C 1.53881 * 100.75539 * 327.03171 * 16 15 13
18 18 C 1.52377 * 115.67709 * 263.23108 * 17 16 15
19 19 N 1.47275 * 87.70343 * 218.74807 * 18 17 16
20 20 C 1.36935 * 135.93442 * 206.17406 * 19 18 17
21 21 H 1.08006 * 120.00018 * 7.56890 * 20 19 18
22 22 C 1.38818 * 120.00126 * 187.55930 * 20 19 18
23 23 N 1.31612 * 119.99984 * 174.51404 * 22 20 19
24 24 Si 1.86797 * 119.99618 * 354.51503 * 22 20 19
25 25 H 1.48497 * 109.46833 * 174.94589 * 24 22 20
26 26 H 1.48497 * 109.47523 * 294.94736 * 24 22 20
27 27 H 1.48508 * 109.47271 * 54.94852 * 24 22 20
28 28 C 1.47274 * 88.12736 * 26.43491 * 19 18 17
29 29 O 1.42402 * 106.67424 * 34.97284 * 17 16 15
30 30 H 1.09001 * 109.47171 * 59.99957 * 1 2 3
31 31 H 1.09000 * 109.47217 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47053 * 299.99940 * 1 2 3
33 33 H 1.08998 * 109.47053 * 240.00060 * 2 1 3
34 34 H 1.08998 * 109.47099 * 120.00576 * 2 1 3
35 35 H 0.97007 * 119.99712 * 0.02562 * 5 3 2
36 36 H 1.08998 * 109.47392 * 60.00423 * 8 6 5
37 37 H 1.09000 * 109.47464 * 180.02562 * 8 6 5
38 38 H 1.08998 * 109.47484 * 300.00087 * 8 6 5
39 39 H 0.97001 * 120.00019 * 0.02562 * 11 9 6
40 40 H 1.08999 * 109.46998 * 60.00501 * 12 11 9
41 41 H 1.08997 * 109.47459 * 300.00487 * 12 11 9
42 42 H 1.09001 * 110.82679 * 259.09880 * 15 13 12
43 43 H 1.09004 * 110.82915 * 22.45718 * 15 13 12
44 44 H 1.09002 * 111.16142 * 209.15506 * 16 15 13
45 45 H 1.09003 * 111.15706 * 84.90239 * 16 15 13
46 46 H 1.08996 * 113.51643 * 104.03947 * 18 17 16
47 47 H 1.09006 * 113.51474 * 333.45290 * 18 17 16
48 48 H 0.96998 * 120.00657 * 354.90781 * 23 22 20
49 49 H 1.08999 * 113.51507 * 88.27374 * 28 19 18
50 50 H 1.08997 * 113.50859 * 218.85232 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 1.2442 2.3427 0.0005
5 7 3.3574 1.6671 0.0005
6 6 3.8458 3.0482 0.0011
7 1 3.1734 3.6716 -0.5884
8 6 3.8968 3.5705 1.4382
9 6 5.2275 3.0927 -0.5989
10 8 5.7527 2.0712 -0.9882
11 7 5.8795 4.2677 -0.7029
12 6 7.2229 4.3109 -1.2857
13 6 7.7329 5.7534 -1.2851
14 1 7.7630 6.1359 -0.2649
15 6 9.1453 5.8101 -1.9080
16 6 9.0920 7.1250 -2.7366
17 6 7.6146 7.1337 -3.1667
18 6 7.3284 6.5797 -4.5570
19 7 6.3296 7.6507 -4.7135
20 6 5.1832 7.8283 -5.4410
21 1 4.7673 7.0051 -6.0031
22 6 4.5555 9.0664 -5.4561
23 7 3.5168 9.2681 -6.2388
24 14 5.1852 10.4460 -4.3654
25 1 4.4278 11.6902 -4.6543
26 1 5.0003 10.0737 -2.9398
27 1 6.6281 10.6710 -4.6351
28 6 7.1063 8.4495 -3.7504
29 8 6.8717 6.5747 -2.0880
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8899
35 1 3.9878 0.9297 0.0005
36 1 4.5691 2.9473 2.0278
37 1 4.2597 4.5983 1.4386
38 1 2.8975 3.5384 1.8722
39 1 5.4595 5.0847 -0.3912
40 1 7.1870 3.9382 -2.3093
41 1 7.8952 3.6880 -0.6956
42 1 9.9087 5.8716 -1.1324
43 1 9.3193 4.9488 -2.5531
44 1 9.7534 7.0721 -3.6015
45 1 9.3265 7.9904 -2.1167
46 1 6.8954 5.5795 -4.5460
47 1 8.1715 6.6679 -5.2424
48 1 3.2351 8.5773 -6.8587
49 1 7.8884 9.0503 -4.2145
50 1 6.4864 9.0224 -3.0608
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001755054300.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:58:12
Heat of formation + Delta-G solvation = -58.478168 kcal
Electronic energy + Delta-G solvation = -30290.636939 eV
Core-core repulsion = 26127.024444 eV
Total energy + Delta-G solvation = -4163.612495 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-40.67461 -40.25460 -39.25848 -36.98172 -35.24426 -34.68995 -33.13031 -32.38776
-32.15592 -31.02149 -29.39255 -27.10443 -25.57971 -25.45266 -24.37136 -23.15482
-21.63518 -21.13462 -20.52832 -20.32175 -19.34327 -18.11107 -17.42330 -17.08181
-16.68989 -16.34900 -15.95601 -15.81086 -15.53272 -15.19155 -14.66303 -14.33513
-14.23480 -13.85854 -13.77723 -13.69868 -13.28075 -13.16846 -13.07750 -12.84787
-12.73093 -12.52754 -12.41530 -12.21462 -11.99850 -11.85967 -11.78019 -11.65982
-11.44991 -11.41726 -10.84874 -10.63994 -10.44493 -10.37640 -10.11199 -10.01325
-9.57977 -9.38442 -9.22090 -9.09631 -8.91041 -8.86441 -7.14288 -6.25390
-3.18606 2.35726 2.46412 2.64166 3.20580 3.41162 3.46626 3.65591
3.78295 4.35681 4.42254 4.53534 4.56854 4.63181 4.71739 4.75351
4.80498 4.85221 4.86715 4.92952 4.94983 5.08256 5.22805 5.28438
5.32880 5.41100 5.47334 5.49941 5.52139 5.56202 5.65856 5.67795
5.80768 5.83557 5.90475 5.96949 6.01538 6.13581 6.14726 6.20304
6.22580 6.29250 6.38284 6.50395 7.12766 7.26401 7.30109 7.40889
7.96909 8.02413 8.27594 9.01432 9.53520 10.38633 11.24851
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.010540 B = 0.002975 C = 0.002503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2655.886965 B = 9409.721179 C =11183.906814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.142 4.142
3 C 0.513 3.487
4 O -0.538 6.538
5 N -0.715 5.715
6 C 0.122 3.878
7 H 0.118 0.882
8 C -0.157 4.157
9 C 0.514 3.486
10 O -0.545 6.545
11 N -0.712 5.712
12 C 0.113 3.887
13 C 0.063 3.937
14 H 0.086 0.914
15 C -0.143 4.143
16 C -0.139 4.139
17 C 0.071 3.929
18 C 0.110 3.890
19 N -0.621 5.621
20 C -0.300 4.300
21 H 0.082 0.918
22 C -0.025 4.025
23 N -0.935 5.935
24 Si 1.070 2.930
25 H -0.295 1.295
26 H -0.291 1.291
27 H -0.288 1.288
28 C 0.102 3.898
29 O -0.332 6.332
30 H 0.063 0.937
31 H 0.061 0.939
32 H 0.061 0.939
33 H 0.095 0.905
34 H 0.093 0.907
35 H 0.409 0.591
36 H 0.062 0.938
37 H 0.073 0.927
38 H 0.074 0.926
39 H 0.409 0.591
40 H 0.074 0.926
41 H 0.077 0.923
42 H 0.082 0.918
43 H 0.080 0.920
44 H 0.086 0.914
45 H 0.080 0.920
46 H 0.048 0.952
47 H 0.046 0.954
48 H 0.260 0.740
49 H 0.059 0.941
50 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.407 -15.525 17.917 25.154
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.182 4.182
3 C 0.300 3.700
4 O -0.414 6.414
5 N -0.369 5.369
6 C 0.014 3.986
7 H 0.135 0.865
8 C -0.216 4.216
9 C 0.299 3.701
10 O -0.422 6.422
11 N -0.363 5.363
12 C -0.010 4.010
13 C 0.005 3.995
14 H 0.103 0.897
15 C -0.182 4.182
16 C -0.177 4.177
17 C 0.030 3.970
18 C -0.017 4.017
19 N -0.348 5.348
20 C -0.426 4.426
21 H 0.099 0.901
22 C -0.224 4.224
23 N -0.578 5.578
24 Si 0.903 3.097
25 H -0.222 1.222
26 H -0.219 1.219
27 H -0.215 1.215
28 C -0.024 4.024
29 O -0.251 6.251
30 H 0.082 0.918
31 H 0.080 0.920
32 H 0.080 0.920
33 H 0.113 0.887
34 H 0.111 0.889
35 H 0.246 0.754
36 H 0.081 0.919
37 H 0.092 0.908
38 H 0.093 0.907
39 H 0.244 0.756
40 H 0.093 0.907
41 H 0.095 0.905
42 H 0.101 0.899
43 H 0.099 0.901
44 H 0.105 0.895
45 H 0.099 0.901
46 H 0.066 0.934
47 H 0.064 0.936
48 H 0.070 0.930
49 H 0.076 0.924
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 7.447 -13.966 17.978 23.952
hybrid contribution 0.744 -1.611 -0.579 1.866
sum 8.191 -15.577 17.398 24.747
Atomic orbital electron populations
1.21539 0.92846 1.01618 1.03526 1.21618 0.98729 0.93389 1.04501
1.20849 0.81654 0.92158 0.75367 1.90733 1.55184 1.46464 1.49017
1.45798 1.07567 1.07781 1.75779 1.20761 0.93521 0.85784 0.98562
0.86466 1.22118 1.03708 1.01530 0.94250 1.20522 0.87216 0.83770
0.78630 1.90679 1.68420 1.33630 1.49507 1.45778 1.18111 1.09780
1.62633 1.21836 0.83043 0.96530 0.99640 1.23095 0.90294 0.89997
0.96151 0.89662 1.23063 0.95782 0.99215 1.00094 1.23006 0.96876
0.97361 1.00485 1.23171 0.88413 0.97154 0.88271 1.22698 0.92369
0.94504 0.92147 1.45894 1.22979 1.15006 1.50967 1.20130 0.98910
0.98130 1.25404 0.90061 1.25709 0.97208 0.97868 1.01600 1.70903
1.26846 1.36282 1.23748 0.83727 0.74839 0.75943 0.75220 1.22237
1.21913 1.21532 1.22855 0.94746 0.93383 0.91392 1.88367 1.33788
1.63855 1.39041 0.91814 0.92041 0.91954 0.88713 0.88873 0.75442
0.91871 0.90784 0.90704 0.75570 0.90740 0.90524 0.89946 0.90089
0.89500 0.90104 0.93414 0.93632 0.92971 0.92401 0.92080
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16
2 C -0.14 -1.08 6.42 -27.88 -0.18 -1.25 16
3 C 0.51 5.82 7.79 -10.99 -0.09 5.73 16
4 O -0.54 -8.21 15.65 5.55 0.09 -8.12 16
5 N -0.72 -7.52 4.95 -54.94 -0.27 -7.79 16
6 C 0.12 1.38 2.98 -69.09 -0.21 1.17 16
7 H 0.12 1.54 7.58 -51.93 -0.39 1.14 16
8 C -0.16 -1.39 9.38 37.16 0.35 -1.05 16
9 C 0.51 6.51 7.22 -10.99 -0.08 6.43 16
10 O -0.54 -8.23 15.84 5.55 0.09 -8.14 16
11 N -0.71 -8.39 5.36 -60.29 -0.32 -8.71 16
12 C 0.11 1.31 5.23 -4.04 -0.02 1.29 16
13 C 0.06 0.72 3.62 -25.96 -0.09 0.63 16
14 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16
15 C -0.14 -1.37 6.56 -24.62 -0.16 -1.53 16
16 C -0.14 -1.64 6.49 -24.94 -0.16 -1.80 16
17 C 0.07 1.21 1.56 -90.66 -0.14 1.07 16
18 C 0.11 2.19 8.24 -7.88 -0.06 2.12 16
19 N -0.62 -15.70 3.70 -184.80 -0.68 -16.38 16
20 C -0.30 -8.95 11.08 -15.06 -0.17 -9.11 16
21 H 0.08 2.57 8.06 -52.48 -0.42 2.15 16
22 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16
23 N -0.94 -30.33 13.70 55.49 0.76 -29.57 16
24 Si 1.07 27.32 25.17 -169.99 -4.28 23.04 16
25 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16
26 H -0.29 -7.10 6.49 56.52 0.37 -6.74 16
27 H -0.29 -6.73 6.18 56.52 0.35 -6.38 16
28 C 0.10 2.15 5.25 -7.73 -0.04 2.11 16
29 O -0.33 -5.56 10.69 -35.23 -0.38 -5.94 16
30 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16
31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
32 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16
33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16
34 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16
35 H 0.41 3.76 7.79 -40.82 -0.32 3.44 16
36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16
37 H 0.07 0.56 7.57 -51.93 -0.39 0.17 16
38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
39 H 0.41 4.45 7.82 -40.82 -0.32 4.13 16
40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16
41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16
42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
43 H 0.08 0.74 7.85 -51.93 -0.41 0.34 16
44 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16
45 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16
47 H 0.05 0.84 7.99 -51.93 -0.41 0.42 16
48 H 0.26 8.36 8.73 -40.82 -0.36 8.00 16
49 H 0.06 1.15 7.59 -51.93 -0.39 0.76 16
50 H 0.06 1.37 4.80 -51.93 -0.25 1.12 16
LS Contribution 400.81 15.07 6.04 6.04
Total: -1.00 -37.98 400.81 -8.22 -46.20
By element:
Atomic # 1 Polarization: 13.67 SS G_CDS: -8.45 Total: 5.21 kcal
Atomic # 6 Polarization: 4.98 SS G_CDS: -0.81 Total: 4.17 kcal
Atomic # 7 Polarization: -61.95 SS G_CDS: -0.52 Total: -62.47 kcal
Atomic # 8 Polarization: -22.01 SS G_CDS: -0.20 Total: -22.21 kcal
Atomic # 14 Polarization: 27.32 SS G_CDS: -4.28 Total: 23.04 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -37.98 -8.22 -46.20 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755054300.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.275 kcal
(2) G-P(sol) polarization free energy of solvation -37.983 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.257 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.203 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds