Wall clock time and date at job start Tue Mar 31 2020 22:58:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.50699 * 109.47199 * 2 1
4 4 O 1.21285 * 119.99993 * 0.02562 * 3 2 1
5 5 N 1.34774 * 120.00087 * 179.97438 * 3 2 1
6 6 C 1.46492 * 120.00341 * 180.02562 * 5 3 2
7 7 H 1.09007 * 109.46961 * 325.00185 * 6 5 3
8 8 C 1.52998 * 109.47284 * 84.99842 * 6 5 3
9 9 C 1.50699 * 109.47495 * 205.00103 * 6 5 3
10 10 O 1.21283 * 119.99640 * 359.97438 * 9 6 5
11 11 N 1.34776 * 120.00218 * 179.97438 * 9 6 5
12 12 C 1.46504 * 119.99868 * 179.97438 * 11 9 6
13 13 C 1.53003 * 109.46734 * 180.02562 * 12 11 9
14 14 H 1.08998 * 109.90014 * 59.48834 * 13 12 11
15 15 C 1.54473 * 109.82812 * 180.42482 * 13 12 11
16 16 C 1.55510 * 102.38818 * 140.87746 * 15 13 12
17 17 C 1.53881 * 100.75539 * 327.03171 * 16 15 13
18 18 C 1.52377 * 115.67709 * 263.23108 * 17 16 15
19 19 N 1.47275 * 87.70343 * 218.74807 * 18 17 16
20 20 C 1.36935 * 135.93442 * 206.17406 * 19 18 17
21 21 H 1.08006 * 120.00018 * 7.56890 * 20 19 18
22 22 C 1.38818 * 120.00126 * 187.55930 * 20 19 18
23 23 N 1.31612 * 119.99984 * 174.51404 * 22 20 19
24 24 Si 1.86797 * 119.99618 * 354.51503 * 22 20 19
25 25 H 1.48497 * 109.46833 * 174.94589 * 24 22 20
26 26 H 1.48497 * 109.47523 * 294.94736 * 24 22 20
27 27 H 1.48508 * 109.47271 * 54.94852 * 24 22 20
28 28 C 1.47274 * 88.12736 * 26.43491 * 19 18 17
29 29 O 1.42402 * 106.67424 * 34.97284 * 17 16 15
30 30 H 1.09001 * 109.47171 * 59.99957 * 1 2 3
31 31 H 1.09000 * 109.47217 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47053 * 299.99940 * 1 2 3
33 33 H 1.08998 * 109.47053 * 240.00060 * 2 1 3
34 34 H 1.08998 * 109.47099 * 120.00576 * 2 1 3
35 35 H 0.97007 * 119.99712 * 0.02562 * 5 3 2
36 36 H 1.08998 * 109.47392 * 60.00423 * 8 6 5
37 37 H 1.09000 * 109.47464 * 180.02562 * 8 6 5
38 38 H 1.08998 * 109.47484 * 300.00087 * 8 6 5
39 39 H 0.97001 * 120.00019 * 0.02562 * 11 9 6
40 40 H 1.08999 * 109.46998 * 60.00501 * 12 11 9
41 41 H 1.08997 * 109.47459 * 300.00487 * 12 11 9
42 42 H 1.09001 * 110.82679 * 259.09880 * 15 13 12
43 43 H 1.09004 * 110.82915 * 22.45718 * 15 13 12
44 44 H 1.09002 * 111.16142 * 209.15506 * 16 15 13
45 45 H 1.09003 * 111.15706 * 84.90239 * 16 15 13
46 46 H 1.08996 * 113.51643 * 104.03947 * 18 17 16
47 47 H 1.09006 * 113.51474 * 333.45290 * 18 17 16
48 48 H 0.96998 * 120.00657 * 354.90781 * 23 22 20
49 49 H 1.08999 * 113.51507 * 88.27374 * 28 19 18
50 50 H 1.08997 * 113.50859 * 218.85232 * 28 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 1.2442 2.3427 0.0005
5 7 3.3574 1.6671 0.0005
6 6 3.8458 3.0482 0.0011
7 1 3.1734 3.6716 -0.5884
8 6 3.8968 3.5705 1.4382
9 6 5.2275 3.0927 -0.5989
10 8 5.7527 2.0712 -0.9882
11 7 5.8795 4.2677 -0.7029
12 6 7.2229 4.3109 -1.2857
13 6 7.7329 5.7534 -1.2851
14 1 7.7630 6.1359 -0.2649
15 6 9.1453 5.8101 -1.9080
16 6 9.0920 7.1250 -2.7366
17 6 7.6146 7.1337 -3.1667
18 6 7.3284 6.5797 -4.5570
19 7 6.3296 7.6507 -4.7135
20 6 5.1832 7.8283 -5.4410
21 1 4.7673 7.0051 -6.0031
22 6 4.5555 9.0664 -5.4561
23 7 3.5168 9.2681 -6.2388
24 14 5.1852 10.4460 -4.3654
25 1 4.4278 11.6902 -4.6543
26 1 5.0003 10.0737 -2.9398
27 1 6.6281 10.6710 -4.6351
28 6 7.1063 8.4495 -3.7504
29 8 6.8717 6.5747 -2.0880
30 1 -0.3633 0.5138 -0.8900
31 1 -0.3633 -1.0277 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8899
35 1 3.9878 0.9297 0.0005
36 1 4.5691 2.9473 2.0278
37 1 4.2597 4.5983 1.4386
38 1 2.8975 3.5384 1.8722
39 1 5.4595 5.0847 -0.3912
40 1 7.1870 3.9382 -2.3093
41 1 7.8952 3.6880 -0.6956
42 1 9.9087 5.8716 -1.1324
43 1 9.3193 4.9488 -2.5531
44 1 9.7534 7.0721 -3.6015
45 1 9.3265 7.9904 -2.1167
46 1 6.8954 5.5795 -4.5460
47 1 8.1715 6.6679 -5.2424
48 1 3.2351 8.5773 -6.8587
49 1 7.8884 9.0503 -4.2145
50 1 6.4864 9.0224 -3.0608
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755054300.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:58:11
Heat of formation + Delta-G solvation = -89.959853 kcal
Electronic energy + Delta-G solvation = -30292.002087 eV
Core-core repulsion = 26127.024444 eV
Total energy + Delta-G solvation = -4164.977643 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.95 seconds
Orbital eigenvalues (eV)
-41.76319 -41.39300 -40.27572 -38.38979 -36.19970 -35.80272 -34.52045 -33.87655
-33.19191 -31.94990 -30.67548 -28.68398 -27.17820 -26.33669 -25.43671 -24.15694
-22.79779 -22.56457 -21.41369 -21.29215 -20.79657 -19.55682 -18.99953 -18.02327
-17.70452 -17.48383 -17.29115 -16.83063 -16.42100 -16.22290 -16.06520 -15.68646
-15.57152 -15.25695 -15.04747 -14.83297 -14.58760 -14.47401 -14.20884 -13.88242
-13.59929 -13.47174 -13.42048 -13.26174 -13.11669 -12.71924 -12.67453 -12.63576
-12.54539 -12.45853 -12.25763 -12.13082 -12.06361 -11.55558 -11.33757 -11.12996
-11.09919 -11.00320 -10.96947 -10.35453 -10.30469 -10.18933 -9.25499 -8.65780
-5.49868 1.35031 1.36244 1.47335 1.54282 1.66606 1.75905 2.32009
2.53344 2.65078 2.99316 3.18074 3.40755 3.48463 3.65561 3.74138
3.77552 3.85782 3.94887 4.02593 4.18667 4.19497 4.24391 4.38395
4.45668 4.51311 4.56994 4.57517 4.61888 4.67432 4.71908 4.76087
4.81630 4.88407 4.95550 4.96293 5.02911 5.03612 5.08726 5.14503
5.18992 5.21928 5.27388 5.34412 5.35515 5.90834 6.23865 6.32537
6.42863 6.66123 6.98363 7.15281 7.29408 8.24061 8.86123
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.010540 B = 0.002975 C = 0.002503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2655.886965 B = 9409.721179 C =11183.906814
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.136 4.136
3 C 0.506 3.494
4 O -0.585 6.585
5 N -0.709 5.709
6 C 0.121 3.879
7 H 0.093 0.907
8 C -0.148 4.148
9 C 0.514 3.486
10 O -0.571 6.571
11 N -0.709 5.709
12 C 0.114 3.886
13 C 0.059 3.941
14 H 0.115 0.885
15 C -0.133 4.133
16 C -0.128 4.128
17 C 0.090 3.910
18 C 0.104 3.896
19 N -0.659 5.659
20 C -0.290 4.290
21 H 0.039 0.961
22 C -0.088 4.088
23 N -0.972 5.972
24 Si 1.113 2.887
25 H -0.304 1.304
26 H -0.276 1.276
27 H -0.250 1.250
28 C 0.091 3.909
29 O -0.365 6.365
30 H 0.040 0.960
31 H 0.087 0.913
32 H 0.050 0.950
33 H 0.112 0.888
34 H 0.125 0.875
35 H 0.417 0.583
36 H 0.078 0.922
37 H 0.087 0.913
38 H 0.065 0.935
39 H 0.413 0.587
40 H 0.046 0.954
41 H 0.100 0.900
42 H 0.121 0.879
43 H 0.083 0.917
44 H 0.102 0.898
45 H 0.102 0.898
46 H 0.029 0.971
47 H 0.071 0.929
48 H 0.243 0.757
49 H 0.081 0.919
50 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.231 -15.991 20.932 29.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.175 4.175
3 C 0.295 3.705
4 O -0.465 6.465
5 N -0.363 5.363
6 C 0.012 3.988
7 H 0.111 0.889
8 C -0.206 4.206
9 C 0.300 3.700
10 O -0.450 6.450
11 N -0.360 5.360
12 C -0.010 4.010
13 C 0.002 3.998
14 H 0.132 0.868
15 C -0.171 4.171
16 C -0.167 4.167
17 C 0.049 3.951
18 C -0.022 4.022
19 N -0.388 5.388
20 C -0.418 4.418
21 H 0.057 0.943
22 C -0.279 4.279
23 N -0.617 5.617
24 Si 0.938 3.062
25 H -0.232 1.232
26 H -0.203 1.203
27 H -0.174 1.174
28 C -0.033 4.033
29 O -0.284 6.284
30 H 0.059 0.941
31 H 0.106 0.894
32 H 0.069 0.931
33 H 0.130 0.870
34 H 0.143 0.857
35 H 0.255 0.745
36 H 0.096 0.904
37 H 0.106 0.894
38 H 0.084 0.916
39 H 0.249 0.751
40 H 0.064 0.936
41 H 0.118 0.882
42 H 0.139 0.861
43 H 0.102 0.898
44 H 0.121 0.879
45 H 0.121 0.879
46 H 0.048 0.952
47 H 0.088 0.912
48 H 0.052 0.948
49 H 0.098 0.902
50 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 11.356 -14.483 21.018 27.937
hybrid contribution -0.441 -1.629 -1.551 2.292
sum 10.915 -16.113 19.467 27.526
Atomic orbital electron populations
1.21548 0.93381 1.02766 1.01851 1.21697 0.98164 0.90916 1.06756
1.21622 0.81367 0.93375 0.74149 1.90711 1.56250 1.48210 1.51314
1.45820 1.07656 1.07758 1.75105 1.20747 0.92148 0.86137 0.99725
0.88948 1.22057 1.03612 1.02558 0.92403 1.20695 0.87463 0.83649
0.78215 1.90659 1.69154 1.34500 1.50735 1.45831 1.18420 1.09669
1.62032 1.21896 0.83220 0.97387 0.98454 1.23417 0.90759 0.88778
0.96844 0.86785 1.23108 0.95201 0.98063 1.00756 1.23019 0.92395
0.99477 1.01776 1.22824 0.91925 0.93424 0.86961 1.22999 0.91454
0.92418 0.95312 1.46023 1.23087 1.18172 1.51504 1.19953 1.00796
0.96770 1.24264 0.94280 1.27212 0.97103 1.00844 1.02742 1.71016
1.29031 1.36202 1.25497 0.83249 0.76368 0.72446 0.74150 1.23205
1.20276 1.17438 1.23148 0.94376 0.95302 0.90489 1.88340 1.36144
1.64720 1.39218 0.94108 0.89374 0.93080 0.87027 0.85722 0.74466
0.90352 0.89401 0.91612 0.75053 0.93557 0.88162 0.86064 0.89840
0.87905 0.87905 0.95216 0.91188 0.94778 0.90172 0.93224
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.17 9.20 71.98 0.66 -1.50 16
2 C -0.14 -1.88 6.42 29.85 0.19 -1.69 16
3 C 0.51 11.59 7.79 87.66 0.68 12.27 16
4 O -0.58 -18.75 15.65 -3.05 -0.05 -18.80 16
5 N -0.71 -14.81 4.95 -446.11 -2.21 -17.02 16
6 C 0.12 2.77 2.98 44.25 0.13 2.90 16
7 H 0.09 2.59 7.58 -2.38 -0.02 2.57 16
8 C -0.15 -2.49 9.38 71.98 0.68 -1.81 16
9 C 0.51 12.81 7.22 87.66 0.63 13.44 16
10 O -0.57 -16.95 15.84 -3.04 -0.05 -16.99 16
11 N -0.71 -15.91 5.36 -463.05 -2.48 -18.39 16
12 C 0.11 2.39 5.23 86.38 0.45 2.84 16
13 C 0.06 1.13 3.62 31.10 0.11 1.24 16
14 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16
15 C -0.13 -1.84 6.56 31.96 0.21 -1.63 16
16 C -0.13 -2.35 6.49 31.76 0.21 -2.15 16
17 C 0.09 2.81 1.56 -10.81 -0.02 2.80 16
18 C 0.10 4.05 8.24 83.47 0.69 4.74 16
19 N -0.66 -33.42 3.70 -740.00 -2.74 -36.15 16
20 C -0.29 -18.05 11.08 84.04 0.93 -17.12 16
21 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16
22 C -0.09 -5.55 5.50 84.86 0.47 -5.08 16
23 N -0.97 -65.99 13.70 21.65 0.30 -65.70 16
24 Si 1.11 55.22 25.17 68.60 1.73 56.95 16
25 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16
26 H -0.28 -12.85 6.49 99.48 0.65 -12.20 16
27 H -0.25 -10.70 6.18 99.48 0.61 -10.08 16
28 C 0.09 3.63 5.25 83.57 0.44 4.07 16
29 O -0.37 -11.42 10.69 -148.98 -1.59 -13.01 16
30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16
31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16
32 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16
33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16
34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16
35 H 0.42 7.31 7.79 -92.70 -0.72 6.59 16
36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
37 H 0.09 1.21 7.57 -2.39 -0.02 1.19 16
38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16
39 H 0.41 8.52 7.82 -92.71 -0.72 7.79 16
40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16
41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16
43 H 0.08 1.15 7.85 -2.38 -0.02 1.13 16
44 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16
45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16
46 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16
47 H 0.07 2.40 7.99 -2.38 -0.02 2.39 16
48 H 0.24 16.68 8.73 -92.71 -0.81 15.88 16
49 H 0.08 2.85 7.59 -2.39 -0.02 2.84 16
50 H 0.05 2.10 4.80 -2.39 -0.01 2.09 16
Total: -1.00 -89.73 400.81 -1.32 -91.05
By element:
Atomic # 1 Polarization: 25.43 SS G_CDS: -0.69 Total: 24.75 kcal
Atomic # 6 Polarization: 6.85 SS G_CDS: 6.47 Total: 13.32 kcal
Atomic # 7 Polarization: -130.13 SS G_CDS: -7.13 Total: -137.26 kcal
Atomic # 8 Polarization: -47.12 SS G_CDS: -1.69 Total: -48.80 kcal
Atomic # 14 Polarization: 55.22 SS G_CDS: 1.73 Total: 56.95 kcal
Total: -89.73 -1.32 -91.05 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755054300.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.091 kcal
(2) G-P(sol) polarization free energy of solvation -89.734 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.643 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.051 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.960 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds