Wall clock time and date at job start Tue Mar 31 2020 22:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.47199 * 2 1 4 4 O 1.21285 * 119.99993 * 0.02562 * 3 2 1 5 5 N 1.34774 * 120.00087 * 179.97438 * 3 2 1 6 6 C 1.46492 * 120.00341 * 180.02562 * 5 3 2 7 7 H 1.09007 * 109.46961 * 325.00185 * 6 5 3 8 8 C 1.52998 * 109.47284 * 84.99842 * 6 5 3 9 9 C 1.50699 * 109.47495 * 205.00103 * 6 5 3 10 10 O 1.21283 * 119.99640 * 359.97438 * 9 6 5 11 11 N 1.34776 * 120.00218 * 179.97438 * 9 6 5 12 12 C 1.46504 * 119.99868 * 179.97438 * 11 9 6 13 13 C 1.53003 * 109.46734 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.90014 * 59.48834 * 13 12 11 15 15 C 1.54473 * 109.82812 * 180.42482 * 13 12 11 16 16 C 1.55510 * 102.38818 * 140.87746 * 15 13 12 17 17 C 1.53881 * 100.75539 * 327.03171 * 16 15 13 18 18 C 1.52377 * 115.67709 * 263.23108 * 17 16 15 19 19 N 1.47275 * 87.70343 * 218.74807 * 18 17 16 20 20 C 1.36935 * 135.93442 * 206.17406 * 19 18 17 21 21 H 1.08006 * 120.00018 * 7.56890 * 20 19 18 22 22 C 1.38818 * 120.00126 * 187.55930 * 20 19 18 23 23 N 1.31612 * 119.99984 * 174.51404 * 22 20 19 24 24 Si 1.86797 * 119.99618 * 354.51503 * 22 20 19 25 25 H 1.48497 * 109.46833 * 174.94589 * 24 22 20 26 26 H 1.48497 * 109.47523 * 294.94736 * 24 22 20 27 27 H 1.48508 * 109.47271 * 54.94852 * 24 22 20 28 28 C 1.47274 * 88.12736 * 26.43491 * 19 18 17 29 29 O 1.42402 * 106.67424 * 34.97284 * 17 16 15 30 30 H 1.09001 * 109.47171 * 59.99957 * 1 2 3 31 31 H 1.09000 * 109.47217 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47053 * 299.99940 * 1 2 3 33 33 H 1.08998 * 109.47053 * 240.00060 * 2 1 3 34 34 H 1.08998 * 109.47099 * 120.00576 * 2 1 3 35 35 H 0.97007 * 119.99712 * 0.02562 * 5 3 2 36 36 H 1.08998 * 109.47392 * 60.00423 * 8 6 5 37 37 H 1.09000 * 109.47464 * 180.02562 * 8 6 5 38 38 H 1.08998 * 109.47484 * 300.00087 * 8 6 5 39 39 H 0.97001 * 120.00019 * 0.02562 * 11 9 6 40 40 H 1.08999 * 109.46998 * 60.00501 * 12 11 9 41 41 H 1.08997 * 109.47459 * 300.00487 * 12 11 9 42 42 H 1.09001 * 110.82679 * 259.09880 * 15 13 12 43 43 H 1.09004 * 110.82915 * 22.45718 * 15 13 12 44 44 H 1.09002 * 111.16142 * 209.15506 * 16 15 13 45 45 H 1.09003 * 111.15706 * 84.90239 * 16 15 13 46 46 H 1.08996 * 113.51643 * 104.03947 * 18 17 16 47 47 H 1.09006 * 113.51474 * 333.45290 * 18 17 16 48 48 H 0.96998 * 120.00657 * 354.90781 * 23 22 20 49 49 H 1.08999 * 113.51507 * 88.27374 * 28 19 18 50 50 H 1.08997 * 113.50859 * 218.85232 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3427 0.0005 5 7 3.3574 1.6671 0.0005 6 6 3.8458 3.0482 0.0011 7 1 3.1734 3.6716 -0.5884 8 6 3.8968 3.5705 1.4382 9 6 5.2275 3.0927 -0.5989 10 8 5.7527 2.0712 -0.9882 11 7 5.8795 4.2677 -0.7029 12 6 7.2229 4.3109 -1.2857 13 6 7.7329 5.7534 -1.2851 14 1 7.7630 6.1359 -0.2649 15 6 9.1453 5.8101 -1.9080 16 6 9.0920 7.1250 -2.7366 17 6 7.6146 7.1337 -3.1667 18 6 7.3284 6.5797 -4.5570 19 7 6.3296 7.6507 -4.7135 20 6 5.1832 7.8283 -5.4410 21 1 4.7673 7.0051 -6.0031 22 6 4.5555 9.0664 -5.4561 23 7 3.5168 9.2681 -6.2388 24 14 5.1852 10.4460 -4.3654 25 1 4.4278 11.6902 -4.6543 26 1 5.0003 10.0737 -2.9398 27 1 6.6281 10.6710 -4.6351 28 6 7.1063 8.4495 -3.7504 29 8 6.8717 6.5747 -2.0880 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.9878 0.9297 0.0005 36 1 4.5691 2.9473 2.0278 37 1 4.2597 4.5983 1.4386 38 1 2.8975 3.5384 1.8722 39 1 5.4595 5.0847 -0.3912 40 1 7.1870 3.9382 -2.3093 41 1 7.8952 3.6880 -0.6956 42 1 9.9087 5.8716 -1.1324 43 1 9.3193 4.9488 -2.5531 44 1 9.7534 7.0721 -3.6015 45 1 9.3265 7.9904 -2.1167 46 1 6.8954 5.5795 -4.5460 47 1 8.1715 6.6679 -5.2424 48 1 3.2351 8.5773 -6.8587 49 1 7.8884 9.0503 -4.2145 50 1 6.4864 9.0224 -3.0608 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755054300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:11 Heat of formation + Delta-G solvation = -89.959853 kcal Electronic energy + Delta-G solvation = -30292.002087 eV Core-core repulsion = 26127.024444 eV Total energy + Delta-G solvation = -4164.977643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.76319 -41.39300 -40.27572 -38.38979 -36.19970 -35.80272 -34.52045 -33.87655 -33.19191 -31.94990 -30.67548 -28.68398 -27.17820 -26.33669 -25.43671 -24.15694 -22.79779 -22.56457 -21.41369 -21.29215 -20.79657 -19.55682 -18.99953 -18.02327 -17.70452 -17.48383 -17.29115 -16.83063 -16.42100 -16.22290 -16.06520 -15.68646 -15.57152 -15.25695 -15.04747 -14.83297 -14.58760 -14.47401 -14.20884 -13.88242 -13.59929 -13.47174 -13.42048 -13.26174 -13.11669 -12.71924 -12.67453 -12.63576 -12.54539 -12.45853 -12.25763 -12.13082 -12.06361 -11.55558 -11.33757 -11.12996 -11.09919 -11.00320 -10.96947 -10.35453 -10.30469 -10.18933 -9.25499 -8.65780 -5.49868 1.35031 1.36244 1.47335 1.54282 1.66606 1.75905 2.32009 2.53344 2.65078 2.99316 3.18074 3.40755 3.48463 3.65561 3.74138 3.77552 3.85782 3.94887 4.02593 4.18667 4.19497 4.24391 4.38395 4.45668 4.51311 4.56994 4.57517 4.61888 4.67432 4.71908 4.76087 4.81630 4.88407 4.95550 4.96293 5.02911 5.03612 5.08726 5.14503 5.18992 5.21928 5.27388 5.34412 5.35515 5.90834 6.23865 6.32537 6.42863 6.66123 6.98363 7.15281 7.29408 8.24061 8.86123 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.002975 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.886965 B = 9409.721179 C =11183.906814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.136 4.136 3 C 0.506 3.494 4 O -0.585 6.585 5 N -0.709 5.709 6 C 0.121 3.879 7 H 0.093 0.907 8 C -0.148 4.148 9 C 0.514 3.486 10 O -0.571 6.571 11 N -0.709 5.709 12 C 0.114 3.886 13 C 0.059 3.941 14 H 0.115 0.885 15 C -0.133 4.133 16 C -0.128 4.128 17 C 0.090 3.910 18 C 0.104 3.896 19 N -0.659 5.659 20 C -0.290 4.290 21 H 0.039 0.961 22 C -0.088 4.088 23 N -0.972 5.972 24 Si 1.113 2.887 25 H -0.304 1.304 26 H -0.276 1.276 27 H -0.250 1.250 28 C 0.091 3.909 29 O -0.365 6.365 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.417 0.583 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.413 0.587 40 H 0.046 0.954 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.029 0.971 47 H 0.071 0.929 48 H 0.243 0.757 49 H 0.081 0.919 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.231 -15.991 20.932 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.175 4.175 3 C 0.295 3.705 4 O -0.465 6.465 5 N -0.363 5.363 6 C 0.012 3.988 7 H 0.111 0.889 8 C -0.206 4.206 9 C 0.300 3.700 10 O -0.450 6.450 11 N -0.360 5.360 12 C -0.010 4.010 13 C 0.002 3.998 14 H 0.132 0.868 15 C -0.171 4.171 16 C -0.167 4.167 17 C 0.049 3.951 18 C -0.022 4.022 19 N -0.388 5.388 20 C -0.418 4.418 21 H 0.057 0.943 22 C -0.279 4.279 23 N -0.617 5.617 24 Si 0.938 3.062 25 H -0.232 1.232 26 H -0.203 1.203 27 H -0.174 1.174 28 C -0.033 4.033 29 O -0.284 6.284 30 H 0.059 0.941 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.130 0.870 34 H 0.143 0.857 35 H 0.255 0.745 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.249 0.751 40 H 0.064 0.936 41 H 0.118 0.882 42 H 0.139 0.861 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.356 -14.483 21.018 27.937 hybrid contribution -0.441 -1.629 -1.551 2.292 sum 10.915 -16.113 19.467 27.526 Atomic orbital electron populations 1.21548 0.93381 1.02766 1.01851 1.21697 0.98164 0.90916 1.06756 1.21622 0.81367 0.93375 0.74149 1.90711 1.56250 1.48210 1.51314 1.45820 1.07656 1.07758 1.75105 1.20747 0.92148 0.86137 0.99725 0.88948 1.22057 1.03612 1.02558 0.92403 1.20695 0.87463 0.83649 0.78215 1.90659 1.69154 1.34500 1.50735 1.45831 1.18420 1.09669 1.62032 1.21896 0.83220 0.97387 0.98454 1.23417 0.90759 0.88778 0.96844 0.86785 1.23108 0.95201 0.98063 1.00756 1.23019 0.92395 0.99477 1.01776 1.22824 0.91925 0.93424 0.86961 1.22999 0.91454 0.92418 0.95312 1.46023 1.23087 1.18172 1.51504 1.19953 1.00796 0.96770 1.24264 0.94280 1.27212 0.97103 1.00844 1.02742 1.71016 1.29031 1.36202 1.25497 0.83249 0.76368 0.72446 0.74150 1.23205 1.20276 1.17438 1.23148 0.94376 0.95302 0.90489 1.88340 1.36144 1.64720 1.39218 0.94108 0.89374 0.93080 0.87027 0.85722 0.74466 0.90352 0.89401 0.91612 0.75053 0.93557 0.88162 0.86064 0.89840 0.87905 0.87905 0.95216 0.91188 0.94778 0.90172 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.20 71.98 0.66 -1.50 16 2 C -0.14 -1.88 6.42 29.85 0.19 -1.69 16 3 C 0.51 11.59 7.79 87.66 0.68 12.27 16 4 O -0.58 -18.75 15.65 -3.05 -0.05 -18.80 16 5 N -0.71 -14.81 4.95 -446.11 -2.21 -17.02 16 6 C 0.12 2.77 2.98 44.25 0.13 2.90 16 7 H 0.09 2.59 7.58 -2.38 -0.02 2.57 16 8 C -0.15 -2.49 9.38 71.98 0.68 -1.81 16 9 C 0.51 12.81 7.22 87.66 0.63 13.44 16 10 O -0.57 -16.95 15.84 -3.04 -0.05 -16.99 16 11 N -0.71 -15.91 5.36 -463.05 -2.48 -18.39 16 12 C 0.11 2.39 5.23 86.38 0.45 2.84 16 13 C 0.06 1.13 3.62 31.10 0.11 1.24 16 14 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 15 C -0.13 -1.84 6.56 31.96 0.21 -1.63 16 16 C -0.13 -2.35 6.49 31.76 0.21 -2.15 16 17 C 0.09 2.81 1.56 -10.81 -0.02 2.80 16 18 C 0.10 4.05 8.24 83.47 0.69 4.74 16 19 N -0.66 -33.42 3.70 -740.00 -2.74 -36.15 16 20 C -0.29 -18.05 11.08 84.04 0.93 -17.12 16 21 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 22 C -0.09 -5.55 5.50 84.86 0.47 -5.08 16 23 N -0.97 -65.99 13.70 21.65 0.30 -65.70 16 24 Si 1.11 55.22 25.17 68.60 1.73 56.95 16 25 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 26 H -0.28 -12.85 6.49 99.48 0.65 -12.20 16 27 H -0.25 -10.70 6.18 99.48 0.61 -10.08 16 28 C 0.09 3.63 5.25 83.57 0.44 4.07 16 29 O -0.37 -11.42 10.69 -148.98 -1.59 -13.01 16 30 H 0.04 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.42 7.31 7.79 -92.70 -0.72 6.59 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.09 1.21 7.57 -2.39 -0.02 1.19 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.41 8.52 7.82 -92.71 -0.72 7.79 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.12 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 1.15 7.85 -2.38 -0.02 1.13 16 44 H 0.10 1.62 7.93 -2.39 -0.02 1.60 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 47 H 0.07 2.40 7.99 -2.38 -0.02 2.39 16 48 H 0.24 16.68 8.73 -92.71 -0.81 15.88 16 49 H 0.08 2.85 7.59 -2.39 -0.02 2.84 16 50 H 0.05 2.10 4.80 -2.39 -0.01 2.09 16 Total: -1.00 -89.73 400.81 -1.32 -91.05 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -0.69 Total: 24.75 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: 6.47 Total: 13.32 kcal Atomic # 7 Polarization: -130.13 SS G_CDS: -7.13 Total: -137.26 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -1.69 Total: -48.80 kcal Atomic # 14 Polarization: 55.22 SS G_CDS: 1.73 Total: 56.95 kcal Total: -89.73 -1.32 -91.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.091 kcal (2) G-P(sol) polarization free energy of solvation -89.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds