Wall clock time and date at job start Tue Mar 31 2020 22:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50696 * 109.46968 * 2 1 4 4 O 1.21283 * 120.00259 * 359.97438 * 3 2 1 5 5 N 1.34783 * 120.00106 * 180.02562 * 3 2 1 6 6 C 1.46503 * 120.00077 * 179.97438 * 5 3 2 7 7 H 1.08998 * 109.46804 * 324.99967 * 6 5 3 8 8 C 1.53001 * 109.47067 * 84.99906 * 6 5 3 9 9 C 1.50701 * 109.46815 * 204.99907 * 6 5 3 10 10 O 1.21272 * 120.00283 * 0.02562 * 9 6 5 11 11 N 1.34774 * 119.99670 * 179.97438 * 9 6 5 12 12 C 1.46498 * 120.00299 * 179.97438 * 11 9 6 13 13 C 1.53001 * 109.47453 * 180.02562 * 12 11 9 14 14 H 1.08992 * 110.52117 * 307.79644 * 13 12 11 15 15 C 1.55059 * 110.58161 * 184.99868 * 13 12 11 16 16 C 1.55030 * 102.12935 * 204.78112 * 15 13 12 17 17 C 1.53322 * 103.78366 * 20.86698 * 16 15 13 18 18 C 1.52652 * 115.56243 * 133.64213 * 17 16 15 19 19 N 1.47222 * 87.77949 * 90.04529 * 18 17 16 20 20 C 1.36932 * 135.96431 * 206.41651 * 19 18 17 21 21 H 1.08004 * 120.00066 * 6.79093 * 20 19 18 22 22 C 1.38808 * 119.99884 * 186.79269 * 20 19 18 23 23 N 1.31629 * 119.99858 * 172.34298 * 22 20 19 24 24 Si 1.86797 * 120.00274 * 352.34104 * 22 20 19 25 25 H 1.48502 * 109.47471 * 175.35206 * 24 22 20 26 26 H 1.48504 * 109.47042 * 55.35242 * 24 22 20 27 27 H 1.48501 * 109.47081 * 295.35483 * 24 22 20 28 28 C 1.47219 * 88.06699 * 26.66772 * 19 18 17 29 29 O 1.42842 * 108.32807 * 1.60437 * 17 16 15 30 30 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47473 * 300.00149 * 1 2 3 32 32 H 1.08999 * 109.47128 * 60.00193 * 1 2 3 33 33 H 1.08996 * 109.47159 * 239.99589 * 2 1 3 34 34 H 1.09003 * 109.47265 * 119.99325 * 2 1 3 35 35 H 0.96992 * 119.99678 * 359.97438 * 5 3 2 36 36 H 1.08995 * 109.47088 * 59.99595 * 8 6 5 37 37 H 1.09001 * 109.47118 * 179.97438 * 8 6 5 38 38 H 1.08999 * 109.46753 * 300.00166 * 8 6 5 39 39 H 0.97010 * 120.00048 * 0.02562 * 11 9 6 40 40 H 1.09008 * 109.46834 * 60.00005 * 12 11 9 41 41 H 1.09004 * 109.46721 * 300.00651 * 12 11 9 42 42 H 1.09008 * 110.87007 * 86.62571 * 15 13 12 43 43 H 1.08998 * 111.05506 * 323.02742 * 15 13 12 44 44 H 1.08993 * 110.56812 * 262.29252 * 16 15 13 45 45 H 1.08997 * 110.68568 * 139.49791 * 16 15 13 46 46 H 1.09002 * 113.50148 * 335.31600 * 18 17 16 47 47 H 1.09005 * 113.56183 * 204.78256 * 18 17 16 48 48 H 0.96991 * 120.00047 * 4.89162 * 23 22 20 49 49 H 1.09004 * 113.49685 * 88.06070 * 28 19 18 50 50 H 1.08993 * 113.49991 * 218.60291 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8457 3.0484 -0.0011 7 1 3.1729 3.6713 -0.5905 8 6 3.8976 3.5716 1.4358 9 6 5.2270 3.0926 -0.6020 10 8 5.7516 2.0711 -0.9919 11 7 5.8788 4.2675 -0.7071 12 6 7.2218 4.3105 -1.2908 13 6 7.7317 5.7530 -1.2915 14 1 7.0032 6.4156 -1.7585 15 6 9.0987 5.8476 -2.0172 16 6 9.7197 7.1163 -1.3782 17 6 8.9526 7.2743 -0.0602 18 6 9.8099 7.5541 1.1715 19 7 9.6556 8.9893 0.8822 20 6 10.3767 10.1266 1.1304 21 1 11.3610 10.0569 1.5694 22 6 9.8425 11.3691 0.8178 23 7 10.4659 12.4664 1.1917 24 14 8.2390 11.4839 -0.1334 25 1 7.8277 12.9068 -0.2405 26 1 7.1854 10.7163 0.5779 27 1 8.4290 10.9198 -1.4939 28 6 8.3835 8.6671 0.2149 29 8 8.0283 6.1913 0.0542 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 3.9877 0.9299 -0.0005 36 1 4.5703 2.9486 2.0252 37 1 4.2613 4.5991 1.4354 38 1 2.8985 3.5395 1.8704 39 1 5.4590 5.0847 -0.3956 40 1 7.1853 3.9371 -2.3143 41 1 7.8945 3.6879 -0.7007 42 1 8.9604 5.9813 -3.0902 43 1 9.7121 4.9700 -1.8130 44 1 9.5625 7.9839 -2.0190 45 1 10.7828 6.9703 -1.1873 46 1 10.8362 7.1993 1.0764 47 1 9.3423 7.2464 2.1069 48 1 11.3329 12.4088 1.6227 49 1 7.5278 8.6615 0.8900 50 1 8.2059 9.2519 -0.6876 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755054301.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:15 Heat of formation + Delta-G solvation = -89.438433 kcal Electronic energy + Delta-G solvation = -29741.221636 eV Core-core repulsion = 25576.266603 eV Total energy + Delta-G solvation = -4164.955033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.72432 -41.37698 -40.23645 -38.44749 -36.15345 -35.82147 -34.50554 -33.82458 -33.14953 -31.88560 -30.58255 -28.73550 -27.22271 -26.29759 -25.35506 -24.07249 -23.13568 -22.38361 -21.37201 -21.25948 -20.77786 -19.52090 -18.93791 -17.98858 -17.70561 -17.49878 -17.19026 -16.70259 -16.46347 -16.30689 -16.22281 -15.90994 -15.34954 -15.12365 -15.01496 -14.80631 -14.56447 -14.42618 -14.17151 -13.78767 -13.55855 -13.43967 -13.38447 -13.19767 -13.07267 -12.74030 -12.70299 -12.64981 -12.62307 -12.40662 -12.23943 -12.02938 -12.01551 -11.73580 -11.43939 -11.33555 -11.05992 -11.03284 -10.92074 -10.33707 -10.27015 -10.16099 -9.24661 -8.68828 -5.51112 1.36090 1.42899 1.46521 1.58419 1.66118 1.79776 2.37539 2.51822 2.57867 2.96468 3.23149 3.40577 3.49357 3.59464 3.65177 3.80234 3.91508 3.99279 4.06781 4.11765 4.23481 4.28979 4.38903 4.41612 4.47876 4.57817 4.61377 4.63115 4.68990 4.71012 4.79720 4.82283 4.83521 4.91853 4.99419 5.01318 5.07583 5.10220 5.12738 5.14026 5.23572 5.27004 5.31875 5.40081 5.91041 6.01030 6.37111 6.47590 6.65906 7.03380 7.19593 7.27839 8.21717 8.86998 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019832 B = 0.002118 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.500680 B =13216.968157 C =13964.248982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.138 4.138 3 C 0.510 3.490 4 O -0.582 6.582 5 N -0.711 5.711 6 C 0.126 3.874 7 H 0.112 0.888 8 C -0.154 4.154 9 C 0.517 3.483 10 O -0.569 6.569 11 N -0.711 5.711 12 C 0.135 3.865 13 C 0.059 3.941 14 H 0.092 0.908 15 C -0.133 4.133 16 C -0.118 4.118 17 C 0.088 3.912 18 C 0.126 3.874 19 N -0.648 5.648 20 C -0.290 4.290 21 H 0.053 0.947 22 C -0.083 4.083 23 N -0.968 5.968 24 Si 1.107 2.893 25 H -0.305 1.305 26 H -0.263 1.263 27 H -0.266 1.266 28 C 0.081 3.919 29 O -0.361 6.361 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.046 0.954 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.416 0.584 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.415 0.585 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.247 0.753 49 H 0.051 0.949 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.494 -27.929 -7.436 32.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.178 4.178 3 C 0.299 3.701 4 O -0.461 6.461 5 N -0.365 5.365 6 C 0.018 3.982 7 H 0.130 0.870 8 C -0.213 4.213 9 C 0.302 3.698 10 O -0.448 6.448 11 N -0.363 5.363 12 C 0.011 3.989 13 C 0.001 3.999 14 H 0.110 0.890 15 C -0.171 4.171 16 C -0.156 4.156 17 C 0.046 3.954 18 C 0.000 4.000 19 N -0.379 5.379 20 C -0.417 4.417 21 H 0.070 0.930 22 C -0.275 4.275 23 N -0.613 5.613 24 Si 0.932 3.068 25 H -0.233 1.233 26 H -0.188 1.188 27 H -0.193 1.193 28 C -0.044 4.044 29 O -0.279 6.279 30 H 0.103 0.897 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.252 0.748 40 H 0.116 0.884 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.111 0.889 44 H 0.092 0.908 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.703 -26.854 -8.055 32.634 hybrid contribution 1.981 -0.081 1.273 2.356 sum -14.722 -26.934 -6.783 31.436 Atomic orbital electron populations 1.21540 0.93357 1.02653 1.01951 1.21696 0.98172 0.91285 1.06625 1.21496 0.81325 0.93192 0.74135 1.90697 1.56139 1.48003 1.51305 1.45855 1.07659 1.07890 1.75084 1.20733 0.92380 0.86147 0.98982 0.87022 1.22091 1.03308 1.02433 0.93443 1.20671 0.87536 0.83457 0.78091 1.90682 1.69200 1.34365 1.50555 1.45866 1.17878 1.10022 1.62547 1.21425 0.82674 0.94700 1.00066 1.23609 0.97950 0.95042 0.83288 0.89046 1.23135 0.94697 0.97647 1.01584 1.22419 1.00374 0.99240 0.93559 1.23158 0.89916 0.85677 0.96616 1.22544 0.98141 0.83258 0.96033 1.45718 1.21835 1.03230 1.67098 1.19941 0.98650 0.84401 1.38725 0.92956 1.27078 1.08529 0.90252 1.01606 1.71030 1.16408 1.28944 1.44925 0.83295 0.72768 0.74573 0.76119 1.23283 1.18794 1.19260 1.23379 0.90155 0.94627 0.96215 1.88757 1.62691 1.49288 1.27151 0.89733 0.93368 0.93501 0.86735 0.86440 0.74620 0.91606 0.89639 0.91482 0.74829 0.88393 0.91134 0.87300 0.88902 0.90781 0.90216 0.92547 0.93486 0.94402 0.93087 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.20 71.98 0.66 -0.82 16 2 C -0.14 -1.24 6.42 29.85 0.19 -1.05 16 3 C 0.51 8.53 7.79 87.65 0.68 9.21 16 4 O -0.58 -14.37 15.64 -3.04 -0.05 -14.42 16 5 N -0.71 -10.68 4.95 -446.08 -2.21 -12.89 16 6 C 0.13 2.01 2.98 44.25 0.13 2.14 16 7 H 0.11 1.87 7.58 -2.39 -0.02 1.86 16 8 C -0.15 -2.22 9.38 71.98 0.68 -1.55 16 9 C 0.52 9.32 7.22 87.66 0.63 9.95 16 10 O -0.57 -13.34 15.84 -3.00 -0.05 -13.39 16 11 N -0.71 -11.12 5.45 -463.06 -2.52 -13.64 16 12 C 0.13 2.16 5.42 86.38 0.47 2.63 16 13 C 0.06 1.06 3.38 31.30 0.11 1.16 16 14 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 15 C -0.13 -2.25 6.60 31.99 0.21 -2.04 16 16 C -0.12 -3.09 6.46 31.40 0.20 -2.89 16 17 C 0.09 2.77 1.66 -10.82 -0.02 2.75 16 18 C 0.13 4.84 8.20 83.40 0.68 5.52 16 19 N -0.65 -31.09 3.66 -739.09 -2.70 -33.79 16 20 C -0.29 -16.82 11.08 84.03 0.93 -15.89 16 21 H 0.05 3.27 8.05 -2.91 -0.02 3.25 16 22 C -0.08 -4.93 5.50 84.86 0.47 -4.47 16 23 N -0.97 -62.45 13.70 21.65 0.30 -62.15 16 24 Si 1.11 52.72 25.13 68.60 1.72 54.45 16 25 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 26 H -0.26 -11.38 6.11 99.48 0.61 -10.77 16 27 H -0.27 -11.34 6.63 99.48 0.66 -10.68 16 28 C 0.08 3.21 5.22 83.50 0.44 3.65 16 29 O -0.36 -9.45 11.03 -148.98 -1.64 -11.10 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 32 H 0.05 0.65 8.10 -2.39 -0.02 0.63 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.42 5.33 7.79 -92.71 -0.72 4.60 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.06 7.56 -2.39 -0.02 1.04 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.42 5.42 7.89 -92.70 -0.73 4.68 16 40 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 41 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.09 1.39 8.06 -2.39 -0.02 1.37 16 44 H 0.07 2.06 7.82 -2.39 -0.02 2.05 16 45 H 0.08 2.15 7.81 -2.39 -0.02 2.13 16 46 H 0.06 2.07 7.91 -2.39 -0.02 2.06 16 47 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 48 H 0.25 15.99 8.73 -92.72 -0.81 15.18 16 49 H 0.05 2.03 7.69 -2.38 -0.02 2.01 16 50 H 0.05 2.10 4.50 -2.39 -0.01 2.09 16 Total: -1.00 -78.59 400.78 -1.37 -79.96 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.69 Total: 18.66 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 6.46 Total: 8.31 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -7.14 Total: -122.48 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.74 Total: -38.90 kcal Atomic # 14 Polarization: 52.72 SS G_CDS: 1.72 Total: 54.45 kcal Total: -78.59 -1.37 -79.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054301.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.474 kcal (2) G-P(sol) polarization free energy of solvation -78.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds