Wall clock time and date at job start Tue Mar 31 2020 23:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42900 * 113.99707 * 2 1 4 4 C 1.52995 * 109.46764 * 184.94980 * 3 2 1 5 5 C 1.50706 * 115.55107 * 294.79038 * 4 3 2 6 6 O 1.21275 * 120.00066 * 113.65326 * 5 4 3 7 7 N 1.34775 * 119.99510 * 293.65477 * 5 4 3 8 8 C 1.47484 * 127.03721 * 5.42746 * 7 5 4 9 9 C 1.54005 * 107.08784 * 205.41109 * 8 7 5 10 10 H 1.09004 * 110.32421 * 117.58628 * 9 8 7 11 11 C 1.52996 * 110.32899 * 239.70435 * 9 8 7 12 12 C 1.54619 * 105.13142 * 358.64922 * 9 8 7 13 13 H 1.08998 * 110.74551 * 96.53628 * 12 9 8 14 14 N 1.46906 * 110.73736 * 219.86124 * 12 9 8 15 15 C 1.46898 * 110.99876 * 202.61797 * 14 12 9 16 16 C 1.50697 * 109.46836 * 180.02562 * 15 14 12 17 17 O 1.21294 * 120.00616 * 359.97438 * 16 15 14 18 18 N 1.34783 * 119.99998 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99923 * 180.02562 * 18 16 15 20 20 H 1.07995 * 120.00535 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99719 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00201 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99997 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46863 * 60.00001 * 23 21 19 25 25 H 1.48497 * 109.47227 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47020 * 300.00382 * 23 21 19 27 27 C 1.48119 * 127.03362 * 185.39126 * 7 5 4 28 28 C 1.53000 * 117.50409 * 80.45898 * 4 3 2 29 29 C 1.52999 * 117.50129 * 149.12383 * 4 3 2 30 30 H 1.09001 * 109.47329 * 59.99893 * 1 2 3 31 31 H 1.08996 * 109.47369 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47090 * 300.00468 * 1 2 3 33 33 H 1.08996 * 109.47726 * 64.94566 * 3 2 1 34 34 H 1.08998 * 109.46997 * 304.94448 * 3 2 1 35 35 H 1.09004 * 109.91380 * 86.05380 * 8 7 5 36 36 H 1.08999 * 109.91469 * 324.77382 * 8 7 5 37 37 H 1.08997 * 109.47214 * 60.11869 * 11 9 8 38 38 H 1.09006 * 109.47261 * 180.11782 * 11 9 8 39 39 H 1.09004 * 109.46982 * 300.11104 * 11 9 8 40 40 H 1.00894 * 111.00165 * 326.58025 * 14 12 9 41 41 H 1.08996 * 109.47589 * 300.00024 * 15 14 12 42 42 H 1.09002 * 109.47085 * 60.00473 * 15 14 12 43 43 H 0.96998 * 119.99482 * 359.97438 * 18 16 15 44 44 H 0.96993 * 120.00018 * 180.02562 * 22 21 19 45 45 H 1.09002 * 110.66126 * 259.18361 * 27 7 5 46 46 H 1.09002 * 110.66142 * 22.12915 * 27 7 5 47 47 H 1.08997 * 117.50122 * 214.99916 * 28 4 3 48 48 H 1.09007 * 117.49764 * 0.02577 * 28 4 3 49 49 H 1.09003 * 117.49772 * 359.96714 * 29 4 3 50 50 H 1.08998 * 117.50646 * 144.97523 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5305 1.1869 -0.1245 5 6 4.2280 0.5251 1.0360 6 8 4.7777 -0.5450 0.8829 7 7 4.2408 1.1226 2.2440 8 6 3.5347 2.3581 2.6315 9 6 4.3162 2.9766 3.8056 10 1 4.7028 3.9574 3.5283 11 6 3.4196 3.0893 5.0402 12 6 5.4815 1.9968 4.0756 13 1 6.3901 2.3301 3.5743 14 7 5.7083 1.8434 5.5189 15 6 7.0765 1.3830 5.7908 16 6 7.2711 1.2370 7.2780 17 8 6.3599 1.4918 8.0369 18 7 8.4581 0.8242 7.7650 19 6 8.6350 0.6909 9.1179 20 1 7.8234 0.9169 9.7936 21 6 9.8586 0.2648 9.6199 22 7 10.8461 -0.0109 8.7979 23 14 10.0995 0.0823 11.4634 24 1 9.1292 -0.9091 11.9936 25 1 11.4829 -0.3822 11.7383 26 1 9.8778 1.3939 12.1237 27 6 4.9661 0.6722 3.4544 28 6 4.1090 0.9549 -1.5217 29 6 4.2709 2.3170 -0.8423 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.7605 1.8145 0.9309 34 1 1.6202 1.8768 -0.8424 35 1 2.5181 2.1218 2.9458 36 1 3.5145 3.0530 1.7920 37 1 3.0731 2.0972 5.3294 38 1 3.9854 3.5301 5.8611 39 1 2.5618 3.7211 4.8098 40 1 5.5118 2.7030 6.0092 41 1 7.2386 0.4198 5.3072 42 1 7.7887 2.1100 5.4005 43 1 9.1870 0.6208 7.1581 44 1 11.7001 -0.3086 9.1483 45 1 4.2895 0.1644 4.1416 46 1 5.7979 0.0215 3.1845 47 1 4.9941 0.3238 -1.6016 48 1 3.4066 0.8872 -2.3525 49 1 3.6748 3.1449 -1.2264 50 1 5.2623 2.5822 -0.4751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755111218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:18 Heat of formation + Delta-G solvation = -101.668213 kcal Electronic energy + Delta-G solvation = -29986.006536 eV Core-core repulsion = 25820.521180 eV Total energy + Delta-G solvation = -4165.485356 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.59682 -40.29640 -39.55265 -38.68037 -37.14440 -36.22692 -35.57811 -33.39612 -33.10440 -30.36271 -29.16221 -28.12117 -27.33861 -26.59702 -25.96126 -24.60984 -23.40566 -22.71103 -21.15392 -20.58933 -20.04788 -19.83124 -18.34150 -17.67453 -17.28726 -17.18810 -17.12671 -16.85707 -16.61333 -16.32451 -16.09933 -15.87034 -15.52878 -15.37165 -15.12005 -14.94425 -14.41370 -14.05888 -14.02810 -13.62150 -13.56150 -13.44044 -13.32904 -13.18476 -13.02687 -12.96520 -12.81736 -12.53443 -12.43894 -12.34626 -12.13354 -11.95740 -11.76255 -11.68357 -11.58622 -11.50348 -11.30947 -10.87828 -10.56594 -10.35513 -10.02863 -9.83734 -9.38550 -8.47134 -5.96216 1.39385 1.41169 1.48264 1.52375 1.78074 2.03761 2.28587 2.38757 2.90192 3.06162 3.19925 3.29850 3.47310 3.58617 3.62332 3.74653 3.87757 3.96076 4.01467 4.23044 4.25291 4.30274 4.34961 4.44595 4.46334 4.50551 4.53097 4.55522 4.60846 4.67904 4.69406 4.70795 4.79212 4.84915 4.86143 4.89167 4.95132 5.04085 5.16487 5.19222 5.23762 5.40001 5.53497 5.86772 6.06991 6.21440 6.38072 6.51146 6.58511 7.06829 7.11231 7.54839 8.09381 8.70064 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021356 B = 0.002056 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.770929 B =13616.931129 C =13999.756559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.422 6.422 3 C 0.102 3.898 4 C -0.175 4.175 5 C 0.566 3.434 6 O -0.590 6.590 7 N -0.615 5.615 8 C 0.109 3.891 9 C -0.097 4.097 10 H 0.111 0.889 11 C -0.136 4.136 12 C 0.081 3.919 13 H 0.066 0.934 14 N -0.665 5.665 15 C 0.062 3.938 16 C 0.440 3.560 17 O -0.619 6.619 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.081 0.919 21 C -0.015 4.015 22 N -0.921 5.921 23 Si 0.995 3.005 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.269 1.269 27 C 0.114 3.886 28 C -0.147 4.147 29 C -0.118 4.118 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.356 0.644 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.123 0.877 49 H 0.144 0.856 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.054 11.122 -22.942 31.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.342 6.342 3 C 0.026 3.974 4 C -0.178 4.178 5 C 0.356 3.644 6 O -0.470 6.470 7 N -0.347 5.347 8 C -0.013 4.013 9 C -0.116 4.116 10 H 0.130 0.870 11 C -0.193 4.193 12 C -0.030 4.030 13 H 0.084 0.916 14 N -0.301 5.301 15 C -0.070 4.070 16 C 0.227 3.773 17 O -0.506 6.506 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.099 0.901 21 C -0.215 4.215 22 N -0.562 5.562 23 Si 0.818 3.182 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.194 1.194 27 C -0.010 4.010 28 C -0.184 4.184 29 C -0.155 4.155 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.125 0.875 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.179 0.821 41 H 0.111 0.889 42 H 0.087 0.913 43 H 0.229 0.771 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.099 0.901 48 H 0.142 0.858 49 H 0.162 0.838 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.338 9.841 -22.528 30.670 hybrid contribution 1.247 -0.068 0.819 1.494 sum -17.091 9.773 -21.709 29.307 Atomic orbital electron populations 1.22911 0.79181 1.03529 1.01300 1.87959 1.21640 1.28930 1.95651 1.22102 0.87698 0.84838 1.02751 1.21313 0.95235 1.08369 0.92928 1.19713 0.78669 0.83640 0.82397 1.90677 1.48564 1.23517 1.84217 1.48688 1.49301 1.27439 1.09282 1.22465 0.95812 0.85027 0.98039 1.22241 0.94593 0.99071 0.95717 0.87041 1.21692 0.99380 1.02071 0.96205 1.22581 0.98314 0.94607 0.87524 0.91598 1.60071 1.23559 1.38728 1.07707 1.21591 0.91306 1.02307 0.91806 1.20770 0.82707 0.82438 0.91357 1.90485 1.42642 1.56476 1.60961 1.41950 1.12322 1.59264 1.07596 1.19643 0.98758 1.44311 0.83580 0.90112 1.26085 0.94487 0.96162 1.04759 1.69673 1.03987 1.45587 1.36986 0.84967 0.77554 0.78871 0.76813 1.19804 1.19598 1.19417 1.22386 0.96056 0.97013 0.85520 1.23050 1.02794 0.99685 0.92898 1.23283 1.01352 0.91946 0.98876 0.91970 0.89648 0.93105 0.91305 0.89055 0.90359 0.87453 0.93537 0.92749 0.90081 0.82059 0.88904 0.91262 0.77090 0.91316 0.91487 0.92452 0.90054 0.85831 0.83776 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.55 10.63 -148.98 -1.58 -10.14 16 3 C 0.10 1.38 5.67 71.98 0.41 1.78 16 4 C -0.18 -3.06 1.30 -52.93 -0.07 -3.13 16 5 C 0.57 15.36 7.08 87.66 0.62 15.98 16 6 O -0.59 -22.33 16.97 -3.01 -0.05 -22.38 16 7 N -0.61 -14.24 3.29 -809.05 -2.66 -16.91 16 8 C 0.11 1.55 5.17 86.53 0.45 2.00 16 9 C -0.10 -1.50 3.50 -9.90 -0.03 -1.54 16 10 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 11 C -0.14 -2.33 8.08 71.98 0.58 -1.75 16 12 C 0.08 1.86 3.26 46.19 0.15 2.01 16 13 H 0.07 1.45 7.86 -2.39 -0.02 1.43 16 14 N -0.66 -20.07 5.31 -489.01 -2.59 -22.66 16 15 C 0.06 2.16 6.04 85.56 0.52 2.68 16 16 C 0.44 21.00 7.82 87.66 0.69 21.69 16 17 O -0.62 -33.96 15.78 -3.07 -0.05 -34.00 16 18 N -0.57 -29.90 5.29 -306.98 -1.62 -31.52 16 19 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 20 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 21 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 22 N -0.92 -50.57 13.05 21.66 0.28 -50.29 16 23 Si 0.99 43.38 29.55 68.60 2.03 45.41 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 27 C 0.11 3.13 6.75 86.79 0.59 3.72 16 28 C -0.15 -2.29 9.78 30.62 0.30 -1.99 16 29 C -0.12 -1.16 9.71 30.62 0.30 -0.86 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.75 6.28 -2.39 -0.02 0.73 16 34 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 35 H 0.08 1.04 7.28 -2.39 -0.02 1.02 16 36 H 0.11 0.87 7.37 -2.39 -0.02 0.86 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.09 6.47 -2.38 -0.02 1.07 16 39 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.36 10.74 6.12 -89.70 -0.55 10.20 16 41 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.07 2.09 8.08 -2.39 -0.02 2.07 16 43 H 0.40 19.73 7.90 -92.71 -0.73 18.99 16 44 H 0.28 14.30 8.31 -92.71 -0.77 13.52 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.06 1.82 7.90 -2.39 -0.02 1.80 16 47 H 0.08 1.68 8.01 -2.39 -0.02 1.66 16 48 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 49 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 50 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -79.94 407.89 0.44 -79.51 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.33 Total: 39.50 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 7.02 Total: 23.49 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -6.60 Total: -121.38 kcal Atomic # 8 Polarization: -64.83 SS G_CDS: -1.68 Total: -66.52 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -79.94 0.44 -79.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755111218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.162 kcal (2) G-P(sol) polarization free energy of solvation -79.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds