Wall clock time and date at job start Tue Mar 31 2020 22:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47244 * 2 1 4 4 O 1.21283 * 119.99757 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00238 * 179.97438 * 3 2 1 6 6 C 1.46499 * 120.00054 * 180.02562 * 5 3 2 7 7 C 1.50704 * 109.47185 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99929 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00011 * 179.97438 * 7 6 5 10 10 C 1.47148 * 120.98621 * 0.02562 * 9 7 6 11 11 C 1.53308 * 108.36816 * 129.38694 * 10 9 7 12 12 O 1.42958 * 109.23015 * 52.35400 * 11 10 9 13 13 C 1.42904 * 114.20486 * 297.50383 * 12 11 10 14 14 C 1.52981 * 109.55892 * 302.52464 * 13 12 11 15 15 C 1.53189 * 109.35369 * 300.95970 * 14 13 12 16 16 N 1.46935 * 108.77697 * 305.43153 * 15 14 13 17 17 C 1.36936 * 120.64362 * 233.65085 * 16 15 14 18 18 H 1.07994 * 119.99982 * 31.10367 * 17 16 15 19 19 C 1.38811 * 120.00002 * 211.10626 * 17 16 15 20 20 N 1.31614 * 120.00398 * 198.72326 * 19 17 16 21 21 Si 1.86805 * 119.99901 * 18.72520 * 19 17 16 22 22 H 1.48498 * 109.46953 * 269.99844 * 21 19 17 23 23 H 1.48503 * 109.47152 * 29.99866 * 21 19 17 24 24 H 1.48499 * 109.47026 * 150.00058 * 21 19 17 25 25 C 1.46936 * 118.71297 * 53.92165 * 16 15 14 26 26 C 1.52991 * 109.54487 * 182.22708 * 13 12 11 27 27 C 1.47151 * 120.98357 * 180.02562 * 9 7 6 28 28 H 1.08997 * 109.47642 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47573 * 299.99925 * 1 2 3 30 30 H 1.09000 * 109.47474 * 59.99751 * 1 2 3 31 31 H 1.08998 * 109.47285 * 239.99715 * 2 1 3 32 32 H 1.09003 * 109.46937 * 119.99729 * 2 1 3 33 33 H 0.97001 * 119.99926 * 359.97438 * 5 3 2 34 34 H 1.08998 * 109.47455 * 59.99667 * 6 5 3 35 35 H 1.09003 * 109.46873 * 299.99616 * 6 5 3 36 36 H 1.08999 * 109.68544 * 249.10427 * 10 9 7 37 37 H 1.08992 * 109.68861 * 9.67122 * 10 9 7 38 38 H 1.08999 * 109.50582 * 172.28219 * 11 10 9 39 39 H 1.08998 * 109.51040 * 292.37198 * 11 10 9 40 40 H 1.08998 * 109.49210 * 180.99513 * 14 13 12 41 41 H 1.09004 * 109.51516 * 60.93917 * 14 13 12 42 42 H 1.09003 * 109.59084 * 185.64183 * 15 14 13 43 43 H 1.08998 * 109.70317 * 65.28413 * 15 14 13 44 44 H 0.97005 * 119.99698 * 354.95607 * 20 19 17 45 45 H 1.08996 * 109.58724 * 65.85293 * 25 16 15 46 46 H 1.08997 * 109.58730 * 186.28668 * 25 16 15 47 47 H 1.09004 * 109.49424 * 178.99860 * 26 13 12 48 48 H 1.09001 * 109.49394 * 299.04921 * 26 13 12 49 49 H 1.09009 * 109.67753 * 110.76700 * 27 9 7 50 50 H 1.09003 * 109.68276 * 350.22827 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3527 3.0483 0.0022 8 8 5.9591 1.9980 0.0021 9 7 6.0266 4.2156 0.0024 10 6 5.3128 5.5024 0.0020 11 6 5.8855 6.3727 1.1267 12 8 7.3076 6.4364 0.9952 13 6 7.9651 5.1743 1.1254 14 6 7.6186 4.5537 2.4801 15 6 8.0607 5.5006 3.6002 16 7 9.4865 5.8087 3.4238 17 6 10.3743 5.6153 4.4483 18 1 10.2074 4.8254 5.1656 19 6 11.4889 6.4345 4.5648 20 7 12.5166 6.0483 5.2906 21 14 11.5300 8.0853 3.6913 22 1 12.1070 7.9128 2.3340 23 1 10.1492 8.6200 3.5781 24 1 12.3666 9.0353 4.4677 25 6 9.9402 6.3341 2.1288 26 6 9.4786 5.3728 1.0230 27 6 7.4978 4.2409 0.0029 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9298 0.0013 34 1 3.4820 3.5619 0.8910 35 1 3.4826 3.5624 -0.8889 36 1 5.4552 6.0009 -0.9568 37 1 4.2500 5.3328 0.1740 38 1 5.4681 7.3773 1.0579 39 1 5.6274 5.9367 2.0917 40 1 8.1347 3.5995 2.5856 41 1 6.5422 4.3938 2.5427 42 1 7.9076 5.0201 4.5666 43 1 7.4794 6.4214 3.5538 44 1 12.4669 5.2261 5.8029 45 1 9.5076 7.3208 1.9630 46 1 11.0279 6.4041 2.1236 47 1 9.9802 4.4121 1.1402 48 1 9.7250 5.7952 0.0488 49 1 7.8590 4.6110 -0.9567 50 1 7.8822 3.2359 0.1774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755171480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:58 Heat of formation + Delta-G solvation = -87.394969 kcal Electronic energy + Delta-G solvation = -31142.789113 eV Core-core repulsion = 26977.922691 eV Total energy + Delta-G solvation = -4164.866421 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.05505 -40.05724 -38.96269 -36.56914 -34.92903 -34.82515 -33.24028 -33.10660 -31.47049 -30.44861 -29.18970 -28.97694 -26.56247 -24.43118 -23.93545 -23.44733 -22.58633 -21.08839 -20.76645 -19.61661 -19.12898 -18.05899 -17.46614 -17.05132 -16.67729 -16.51150 -15.84233 -15.73808 -15.46217 -15.22439 -14.98347 -14.38972 -14.31129 -14.24995 -14.04090 -13.68162 -13.56947 -13.41435 -13.27023 -12.73036 -12.71425 -12.44860 -12.20284 -12.13882 -12.03978 -12.00662 -11.65430 -11.55851 -11.41957 -10.94309 -10.71825 -10.55951 -10.46463 -10.29487 -10.16993 -9.85697 -9.73511 -9.57866 -9.56537 -9.08914 -8.70083 -8.47479 -7.01590 -6.21556 -3.33608 2.16119 2.27880 2.32485 2.94310 3.42124 3.56747 3.72557 3.75938 3.96525 4.34718 4.54454 4.59712 4.65276 4.68235 4.69838 4.83100 4.87551 4.89987 4.92959 5.05453 5.07394 5.14413 5.17057 5.40322 5.41863 5.46556 5.50009 5.54041 5.59344 5.67883 5.78632 5.80380 5.91260 6.01711 6.03487 6.08982 6.16831 6.27374 6.32653 6.57824 6.65193 6.70580 6.91444 6.98178 7.09334 7.31974 7.69386 7.82519 8.05415 8.47288 9.08609 9.62145 10.24056 11.15663 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.002498 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.937026 B =11208.474573 C =11539.277142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 C 0.514 3.486 4 O -0.543 6.543 5 N -0.721 5.721 6 C 0.101 3.899 7 C 0.511 3.489 8 O -0.537 6.537 9 N -0.605 5.605 10 C 0.069 3.931 11 C 0.043 3.957 12 O -0.358 6.358 13 C 0.117 3.883 14 C -0.153 4.153 15 C 0.153 3.847 16 N -0.604 5.604 17 C -0.343 4.343 18 H 0.063 0.937 19 C -0.016 4.016 20 N -0.923 5.923 21 Si 1.067 2.933 22 H -0.293 1.293 23 H -0.283 1.283 24 H -0.301 1.301 25 C 0.132 3.868 26 C -0.119 4.119 27 C 0.090 3.910 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.413 0.587 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.024 0.976 44 H 0.262 0.738 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.885 -7.155 -14.378 26.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.301 3.699 4 O -0.420 6.420 5 N -0.377 5.377 6 C -0.026 4.026 7 C 0.299 3.701 8 O -0.414 6.414 9 N -0.338 5.338 10 C -0.054 4.054 11 C -0.035 4.035 12 O -0.277 6.277 13 C 0.077 3.923 14 C -0.192 4.192 15 C 0.027 3.973 16 N -0.328 5.328 17 C -0.471 4.471 18 H 0.080 0.920 19 C -0.218 4.218 20 N -0.562 5.562 21 Si 0.899 3.101 22 H -0.221 1.221 23 H -0.210 1.210 24 H -0.229 1.229 25 C 0.006 3.994 26 C -0.159 4.159 27 C -0.032 4.032 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.251 0.749 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.054 0.946 46 H 0.091 0.909 47 H 0.097 0.903 48 H 0.082 0.918 49 H 0.094 0.906 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -20.054 -5.579 -14.679 25.471 hybrid contribution -0.843 -1.870 0.310 2.075 sum -20.897 -7.449 -14.369 26.432 Atomic orbital electron populations 1.21535 0.92796 1.01739 1.03409 1.21624 0.98731 0.93243 1.04722 1.20852 0.81432 0.92241 0.75392 1.90711 1.55283 1.46565 1.49418 1.45813 1.07805 1.08148 1.75892 1.21078 0.91097 0.85778 1.04686 1.20456 0.89655 0.83690 0.76320 1.90702 1.69749 1.30665 1.50288 1.48045 1.07502 1.05575 1.72697 1.22598 0.97085 0.84373 1.01383 1.22927 0.83014 1.00547 0.97018 1.88057 1.17248 1.29651 1.92697 1.21758 0.94050 0.83240 0.93285 1.22512 0.99755 1.00843 0.96120 1.20805 0.86259 0.95116 0.95133 1.44318 1.02444 1.76925 1.09106 1.20209 1.05616 1.13447 1.07876 0.91957 1.26277 0.92872 1.02496 1.00115 1.70906 1.28072 1.26089 1.31167 0.83735 0.75322 0.76375 0.74654 1.22138 1.20958 1.22860 1.21372 0.98756 0.94601 0.84637 1.22095 0.90934 1.02459 1.00409 1.22512 0.78244 1.02706 0.99777 0.91928 0.91905 0.91958 0.88693 0.88618 0.74934 0.88328 0.88372 0.89970 0.88920 0.87696 0.92037 0.91138 0.92860 0.92601 0.95809 0.92774 0.94607 0.90886 0.90282 0.91761 0.90607 0.88074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.15 0.34 -0.53 16 2 C -0.14 -0.87 6.42 -27.89 -0.18 -1.05 16 3 C 0.51 4.84 7.83 -10.99 -0.09 4.75 16 4 O -0.54 -6.93 15.98 5.56 0.09 -6.85 16 5 N -0.72 -6.46 5.53 -61.47 -0.34 -6.80 16 6 C 0.10 0.91 4.53 -5.19 -0.02 0.89 16 7 C 0.51 5.80 7.78 -10.98 -0.09 5.71 16 8 O -0.54 -7.66 15.14 5.55 0.08 -7.57 16 9 N -0.60 -6.65 2.52 -172.27 -0.43 -7.09 16 10 C 0.07 0.58 6.54 -3.53 -0.02 0.56 16 11 C 0.04 0.46 6.60 37.32 0.25 0.70 16 12 O -0.36 -5.31 9.00 -35.23 -0.32 -5.63 16 13 C 0.12 1.78 0.68 -90.49 -0.06 1.72 16 14 C -0.15 -2.55 4.33 -26.64 -0.12 -2.67 16 15 C 0.15 3.10 6.28 -3.71 -0.02 3.08 16 16 N -0.60 -14.49 2.71 -172.04 -0.47 -14.96 16 17 C -0.34 -9.66 9.88 -15.06 -0.15 -9.81 16 18 H 0.06 1.89 8.06 -52.49 -0.42 1.46 16 19 C -0.02 -0.48 5.24 -17.43 -0.09 -0.57 16 20 N -0.92 -28.73 13.70 55.49 0.76 -27.97 16 21 Si 1.07 26.64 24.73 -169.99 -4.20 22.44 16 22 H -0.29 -6.84 6.56 56.52 0.37 -6.47 16 23 H -0.28 -6.83 6.80 56.52 0.38 -6.45 16 24 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 25 C 0.13 2.86 4.00 -3.48 -0.01 2.84 16 26 C -0.12 -2.06 5.12 -26.41 -0.14 -2.19 16 27 C 0.09 1.16 5.30 -3.54 -0.02 1.14 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.41 3.49 7.44 -40.82 -0.30 3.19 16 34 H 0.10 0.84 7.66 -51.93 -0.40 0.45 16 35 H 0.10 0.78 8.01 -51.93 -0.42 0.37 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.56 6.05 -51.93 -0.31 0.25 16 38 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.69 6.29 -51.93 -0.33 0.37 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.80 6.16 -51.93 -0.32 0.48 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.02 0.48 7.83 -51.93 -0.41 0.07 16 44 H 0.26 8.10 8.73 -40.82 -0.36 7.75 16 45 H 0.04 0.78 6.79 -51.93 -0.35 0.43 16 46 H 0.07 1.71 4.76 -51.93 -0.25 1.47 16 47 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 48 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 49 H 0.08 0.91 8.14 -51.92 -0.42 0.48 16 50 H 0.10 1.44 7.07 -51.93 -0.37 1.07 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -35.06 381.76 -7.63 -42.69 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.13 Total: 1.41 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.42 Total: 4.58 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.48 Total: -56.81 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.14 Total: -20.05 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -4.20 Total: 22.44 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.06 -7.63 -42.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755171480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.709 kcal (2) G-P(sol) polarization free energy of solvation -35.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds