Wall clock time and date at job start Tue Mar 31 2020 22:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47244 * 2 1 4 4 O 1.21283 * 119.99757 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00238 * 179.97438 * 3 2 1 6 6 C 1.46499 * 120.00054 * 180.02562 * 5 3 2 7 7 C 1.50704 * 109.47185 * 179.97438 * 6 5 3 8 8 O 1.21285 * 119.99929 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00011 * 179.97438 * 7 6 5 10 10 C 1.47148 * 120.98621 * 0.02562 * 9 7 6 11 11 C 1.53308 * 108.36816 * 129.38694 * 10 9 7 12 12 O 1.42958 * 109.23015 * 52.35400 * 11 10 9 13 13 C 1.42904 * 114.20486 * 297.50383 * 12 11 10 14 14 C 1.52981 * 109.55892 * 302.52464 * 13 12 11 15 15 C 1.53189 * 109.35369 * 300.95970 * 14 13 12 16 16 N 1.46935 * 108.77697 * 305.43153 * 15 14 13 17 17 C 1.36936 * 120.64362 * 233.65085 * 16 15 14 18 18 H 1.07994 * 119.99982 * 31.10367 * 17 16 15 19 19 C 1.38811 * 120.00002 * 211.10626 * 17 16 15 20 20 N 1.31614 * 120.00398 * 198.72326 * 19 17 16 21 21 Si 1.86805 * 119.99901 * 18.72520 * 19 17 16 22 22 H 1.48498 * 109.46953 * 269.99844 * 21 19 17 23 23 H 1.48503 * 109.47152 * 29.99866 * 21 19 17 24 24 H 1.48499 * 109.47026 * 150.00058 * 21 19 17 25 25 C 1.46936 * 118.71297 * 53.92165 * 16 15 14 26 26 C 1.52991 * 109.54487 * 182.22708 * 13 12 11 27 27 C 1.47151 * 120.98357 * 180.02562 * 9 7 6 28 28 H 1.08997 * 109.47642 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47573 * 299.99925 * 1 2 3 30 30 H 1.09000 * 109.47474 * 59.99751 * 1 2 3 31 31 H 1.08998 * 109.47285 * 239.99715 * 2 1 3 32 32 H 1.09003 * 109.46937 * 119.99729 * 2 1 3 33 33 H 0.97001 * 119.99926 * 359.97438 * 5 3 2 34 34 H 1.08998 * 109.47455 * 59.99667 * 6 5 3 35 35 H 1.09003 * 109.46873 * 299.99616 * 6 5 3 36 36 H 1.08999 * 109.68544 * 249.10427 * 10 9 7 37 37 H 1.08992 * 109.68861 * 9.67122 * 10 9 7 38 38 H 1.08999 * 109.50582 * 172.28219 * 11 10 9 39 39 H 1.08998 * 109.51040 * 292.37198 * 11 10 9 40 40 H 1.08998 * 109.49210 * 180.99513 * 14 13 12 41 41 H 1.09004 * 109.51516 * 60.93917 * 14 13 12 42 42 H 1.09003 * 109.59084 * 185.64183 * 15 14 13 43 43 H 1.08998 * 109.70317 * 65.28413 * 15 14 13 44 44 H 0.97005 * 119.99698 * 354.95607 * 20 19 17 45 45 H 1.08996 * 109.58724 * 65.85293 * 25 16 15 46 46 H 1.08997 * 109.58730 * 186.28668 * 25 16 15 47 47 H 1.09004 * 109.49424 * 178.99860 * 26 13 12 48 48 H 1.09001 * 109.49394 * 299.04921 * 26 13 12 49 49 H 1.09009 * 109.67753 * 110.76700 * 27 9 7 50 50 H 1.09003 * 109.68276 * 350.22827 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3573 1.6671 0.0005 6 6 3.8457 3.0483 0.0011 7 6 5.3527 3.0483 0.0022 8 8 5.9591 1.9980 0.0021 9 7 6.0266 4.2156 0.0024 10 6 5.3128 5.5024 0.0020 11 6 5.8855 6.3727 1.1267 12 8 7.3076 6.4364 0.9952 13 6 7.9651 5.1743 1.1254 14 6 7.6186 4.5537 2.4801 15 6 8.0607 5.5006 3.6002 16 7 9.4865 5.8087 3.4238 17 6 10.3743 5.6153 4.4483 18 1 10.2074 4.8254 5.1656 19 6 11.4889 6.4345 4.5648 20 7 12.5166 6.0483 5.2906 21 14 11.5300 8.0853 3.6913 22 1 12.1070 7.9128 2.3340 23 1 10.1492 8.6200 3.5781 24 1 12.3666 9.0353 4.4677 25 6 9.9402 6.3341 2.1288 26 6 9.4786 5.3728 1.0230 27 6 7.4978 4.2409 0.0029 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.9877 0.9298 0.0013 34 1 3.4820 3.5619 0.8910 35 1 3.4826 3.5624 -0.8889 36 1 5.4552 6.0009 -0.9568 37 1 4.2500 5.3328 0.1740 38 1 5.4681 7.3773 1.0579 39 1 5.6274 5.9367 2.0917 40 1 8.1347 3.5995 2.5856 41 1 6.5422 4.3938 2.5427 42 1 7.9076 5.0201 4.5666 43 1 7.4794 6.4214 3.5538 44 1 12.4669 5.2261 5.8029 45 1 9.5076 7.3208 1.9630 46 1 11.0279 6.4041 2.1236 47 1 9.9802 4.4121 1.1402 48 1 9.7250 5.7952 0.0488 49 1 7.8590 4.6110 -0.9567 50 1 7.8822 3.2359 0.1774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755171480.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:57 Heat of formation + Delta-G solvation = -113.836426 kcal Electronic energy + Delta-G solvation = -31143.935700 eV Core-core repulsion = 26977.922691 eV Total energy + Delta-G solvation = -4166.013009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.02209 -40.91155 -39.97293 -38.04574 -35.91943 -35.63850 -34.80061 -33.72902 -33.19278 -32.02808 -30.19703 -29.98019 -27.73563 -25.60687 -24.97623 -24.66916 -23.93595 -22.65477 -21.45215 -20.87350 -20.16144 -19.48328 -18.77808 -17.91136 -17.56489 -17.28760 -17.02155 -16.80149 -16.43971 -16.25151 -16.12618 -15.81891 -15.75704 -15.29418 -15.05556 -15.03497 -14.97688 -14.38900 -14.26431 -14.00823 -13.74712 -13.51809 -13.43390 -13.19885 -13.11585 -13.03380 -12.86594 -12.63990 -12.48615 -12.19536 -12.03361 -11.92509 -11.66673 -11.63012 -11.49783 -11.30747 -11.05233 -10.98174 -10.90534 -10.59095 -10.29228 -9.63930 -9.10172 -8.47224 -5.58307 1.31598 1.42198 1.52390 1.56487 1.57877 1.75464 2.25237 2.52366 2.72424 3.11216 3.18819 3.33260 3.60334 3.71340 3.77644 3.78831 3.93430 4.10352 4.17861 4.20434 4.24794 4.26551 4.27951 4.29114 4.39948 4.49175 4.58873 4.60153 4.65505 4.71769 4.75132 4.77901 4.86732 4.91536 4.99605 5.00321 5.02923 5.06296 5.14118 5.15135 5.22656 5.36635 5.38737 5.76123 6.13388 6.25551 6.26276 6.41398 6.83895 6.91514 7.13523 7.55110 8.08694 8.84270 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.002498 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.937026 B =11208.474573 C =11539.277142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 C 0.511 3.489 4 O -0.580 6.580 5 N -0.720 5.720 6 C 0.104 3.896 7 C 0.512 3.488 8 O -0.570 6.570 9 N -0.605 5.605 10 C 0.072 3.928 11 C 0.034 3.966 12 O -0.375 6.375 13 C 0.125 3.875 14 C -0.140 4.140 15 C 0.152 3.848 16 N -0.620 5.620 17 C -0.330 4.330 18 H 0.025 0.975 19 C -0.070 4.070 20 N -0.957 5.957 21 Si 1.109 2.891 22 H -0.267 1.267 23 H -0.269 1.269 24 H -0.307 1.307 25 C 0.128 3.872 26 C -0.116 4.116 27 C 0.099 3.901 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.416 0.584 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.035 0.965 44 H 0.247 0.753 45 H 0.043 0.957 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.094 0.906 49 H 0.093 0.907 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.263 -6.552 -17.163 29.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.179 4.179 3 C 0.300 3.700 4 O -0.460 6.460 5 N -0.375 5.375 6 C -0.023 4.023 7 C 0.301 3.699 8 O -0.450 6.450 9 N -0.338 5.338 10 C -0.050 4.050 11 C -0.043 4.043 12 O -0.294 6.294 13 C 0.085 3.915 14 C -0.179 4.179 15 C 0.027 3.973 16 N -0.345 5.345 17 C -0.460 4.460 18 H 0.043 0.957 19 C -0.265 4.265 20 N -0.599 5.599 21 Si 0.935 3.065 22 H -0.193 1.193 23 H -0.194 1.194 24 H -0.236 1.236 25 C 0.003 3.997 26 C -0.155 4.155 27 C -0.024 4.024 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.254 0.746 34 H 0.125 0.875 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.149 0.851 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.472 -4.991 -17.497 28.915 hybrid contribution -0.201 -2.109 1.235 2.453 sum -22.673 -7.100 -16.262 28.791 Atomic orbital electron populations 1.21539 0.93150 1.02692 1.02076 1.21701 0.98338 0.91335 1.06560 1.21434 0.81079 0.93207 0.74317 1.90692 1.56079 1.47930 1.51329 1.45874 1.07860 1.08325 1.75421 1.21122 0.89163 0.86205 1.05782 1.20817 0.90471 0.83183 0.75425 1.90694 1.70573 1.31915 1.51796 1.48110 1.06776 1.06594 1.72279 1.22775 0.98119 0.82678 1.01432 1.23230 0.80946 1.02627 0.97506 1.88022 1.19626 1.28952 1.92773 1.21497 0.92965 0.84168 0.92911 1.22328 1.00622 0.98898 0.96048 1.20883 0.84378 0.96148 0.95910 1.44426 1.03444 1.77356 1.09273 1.20073 1.06244 1.11650 1.08025 0.95691 1.27507 0.92699 1.05415 1.00868 1.71020 1.29622 1.26038 1.33237 0.83194 0.76100 0.72224 0.74984 1.19275 1.19370 1.23598 1.21402 0.97638 0.95934 0.84719 1.21985 0.92571 1.00909 1.00022 1.22236 0.79698 1.01082 0.99385 0.89801 0.93404 0.93142 0.86545 0.86888 0.74583 0.87511 0.86790 0.88105 0.86115 0.85114 0.92890 0.93105 0.90782 0.94338 0.94755 0.94410 0.93949 0.92972 0.91243 0.88784 0.88891 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.20 71.98 0.66 -0.86 16 2 C -0.14 -1.37 6.42 29.85 0.19 -1.18 16 3 C 0.51 8.67 7.83 87.66 0.69 9.36 16 4 O -0.58 -14.04 15.98 -3.04 -0.05 -14.09 16 5 N -0.72 -11.36 5.53 -466.79 -2.58 -13.94 16 6 C 0.10 1.59 4.53 85.63 0.39 1.97 16 7 C 0.51 10.32 7.78 87.66 0.68 11.00 16 8 O -0.57 -15.40 15.14 -3.05 -0.05 -15.44 16 9 N -0.60 -11.36 2.52 -817.34 -2.06 -13.43 16 10 C 0.07 0.90 6.54 86.36 0.56 1.46 16 11 C 0.03 0.59 6.60 72.09 0.48 1.06 16 12 O -0.37 -9.82 9.00 -148.98 -1.34 -11.16 16 13 C 0.12 3.52 0.68 -10.71 -0.01 3.51 16 14 C -0.14 -4.52 4.33 30.65 0.13 -4.39 16 15 C 0.15 6.13 6.28 86.36 0.54 6.67 16 16 N -0.62 -29.88 2.71 -698.23 -1.90 -31.78 16 17 C -0.33 -19.26 9.88 84.03 0.83 -18.43 16 18 H 0.03 1.62 8.06 -2.91 -0.02 1.59 16 19 C -0.07 -4.21 5.24 84.86 0.44 -3.76 16 20 N -0.96 -61.77 13.70 21.65 0.30 -61.48 16 21 Si 1.11 53.90 24.73 68.60 1.70 55.60 16 22 H -0.27 -11.72 6.56 99.48 0.65 -11.07 16 23 H -0.27 -12.24 6.80 99.48 0.68 -11.57 16 24 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 25 C 0.13 5.37 4.00 86.51 0.35 5.71 16 26 C -0.12 -3.77 5.12 30.80 0.16 -3.61 16 27 C 0.10 2.30 5.30 86.35 0.46 2.76 16 28 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 30 H 0.05 0.67 8.10 -2.39 -0.02 0.66 16 31 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.42 6.24 7.44 -92.71 -0.69 5.55 16 34 H 0.11 1.49 7.66 -2.39 -0.02 1.47 16 35 H 0.11 1.42 8.01 -2.39 -0.02 1.40 16 36 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.12 0.88 6.05 -2.39 -0.01 0.86 16 38 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.02 6.29 -2.39 -0.02 1.00 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.08 6.16 -2.38 -0.01 2.06 16 42 H 0.04 1.64 7.93 -2.39 -0.02 1.62 16 43 H 0.03 1.33 7.83 -2.39 -0.02 1.31 16 44 H 0.25 16.10 8.73 -92.70 -0.81 15.29 16 45 H 0.04 1.74 6.79 -2.39 -0.02 1.73 16 46 H 0.05 2.40 4.76 -2.39 -0.01 2.39 16 47 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 48 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 49 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 50 H 0.08 2.29 7.07 -2.39 -0.02 2.28 16 Total: -1.00 -79.34 381.76 0.71 -78.63 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 0.14 Total: 15.80 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 6.55 Total: 11.28 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -6.24 Total: -120.62 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -1.44 Total: -40.69 kcal Atomic # 14 Polarization: 53.90 SS G_CDS: 1.70 Total: 55.60 kcal Total: -79.34 0.71 -78.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755171480.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.202 kcal (2) G-P(sol) polarization free energy of solvation -79.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds