Wall clock time and date at job start Tue Mar 31 2020 23:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.99675 * 2 1 4 4 C 1.54327 * 109.78057 * 121.16993 * 2 1 3 5 5 C 1.55160 * 103.02193 * 97.49241 * 4 2 1 6 6 H 1.08997 * 111.00457 * 277.23126 * 5 4 2 7 7 N 1.46903 * 111.00561 * 153.38214 * 5 4 2 8 8 C 1.46898 * 110.99798 * 161.35197 * 7 5 4 9 9 C 1.50700 * 109.46890 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99947 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00407 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00427 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99913 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00124 * 179.97438 * 12 11 9 15 15 N 1.31408 * 119.99953 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99865 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47234 * 89.99790 * 16 14 12 18 18 H 1.48497 * 109.47002 * 210.00083 * 16 14 12 19 19 H 1.48503 * 109.46929 * 329.99518 * 16 14 12 20 20 C 1.54911 * 101.58095 * 35.30743 * 5 4 2 21 21 N 1.47026 * 109.87833 * 238.90682 * 2 1 3 22 22 C 1.34779 * 125.64829 * 59.55803 * 21 2 1 23 23 O 1.21282 * 119.99922 * 359.72077 * 22 21 2 24 24 C 1.50699 * 120.00037 * 179.71645 * 22 21 2 25 25 O 1.42905 * 109.46972 * 180.02562 * 24 22 21 26 26 C 1.42899 * 113.99778 * 180.02562 * 25 24 22 27 27 C 1.52999 * 109.46889 * 179.97438 * 26 25 24 28 28 C 1.53003 * 117.50215 * 243.62115 * 27 26 25 29 29 C 1.53000 * 117.49963 * 174.99838 * 27 26 25 30 30 H 1.08999 * 109.47576 * 179.64088 * 1 2 3 31 31 H 1.09000 * 109.46636 * 299.63632 * 1 2 3 32 32 H 1.08994 * 109.46978 * 59.63411 * 1 2 3 33 33 H 1.08998 * 110.85443 * 339.02942 * 4 2 1 34 34 H 1.08999 * 110.67229 * 215.87348 * 4 2 1 35 35 H 1.00901 * 110.99691 * 285.30379 * 7 5 4 36 36 H 1.08999 * 109.47215 * 299.99180 * 8 7 5 37 37 H 1.08998 * 109.47480 * 59.99799 * 8 7 5 38 38 H 0.96998 * 119.99573 * 359.97438 * 11 9 8 39 39 H 0.97001 * 119.99744 * 179.97438 * 15 14 12 40 40 H 1.09007 * 110.36622 * 204.15309 * 20 5 4 41 41 H 1.08998 * 110.36731 * 81.82660 * 20 5 4 42 42 H 1.09000 * 109.47247 * 60.00371 * 24 22 21 43 43 H 1.09001 * 109.47358 * 299.99798 * 24 22 21 44 44 H 1.08997 * 109.47171 * 299.99768 * 26 25 24 45 45 H 1.08997 * 109.47442 * 59.99964 * 26 25 24 46 46 H 1.09003 * 115.55052 * 29.33340 * 27 26 25 47 47 H 1.09004 * 117.49403 * 359.97438 * 28 27 26 48 48 H 1.08994 * 117.50232 * 145.02224 * 28 27 26 49 49 H 1.08998 * 117.50223 * 214.98211 * 29 27 26 50 50 H 1.09008 * 117.49765 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2426 5 6 2.3561 -2.1698 0.6912 6 1 1.4522 -2.7779 0.6577 7 7 3.4028 -2.8296 1.4832 8 6 3.3885 -4.2826 1.2680 9 6 4.4737 -4.9235 2.0942 10 8 5.1884 -4.2373 2.7939 11 7 4.6495 -6.2592 2.0566 12 6 5.6371 -6.8422 2.8078 13 1 6.2745 -6.2310 3.4295 14 6 5.8180 -8.2193 2.7694 15 7 6.7649 -8.7780 3.4891 16 14 4.7159 -9.2763 1.6935 17 1 5.3213 -9.4088 0.3440 18 1 4.5703 -10.6217 2.3050 19 1 3.3798 -8.6387 1.5762 20 6 2.8612 -1.8466 -0.7371 21 7 2.0300 -0.7140 -1.1840 22 6 1.7752 -0.3844 -2.4658 23 8 1.0746 0.5729 -2.7179 24 6 2.3610 -1.2052 -3.5856 25 8 1.9502 -0.6601 -4.8411 26 6 2.4536 -1.3690 -5.9752 27 6 1.9526 -0.7014 -7.2574 28 6 1.0336 -1.5193 -8.1672 29 6 2.4785 -1.2434 -8.5880 30 1 -0.3634 -1.0276 -0.0064 31 1 -0.3632 0.5082 0.8933 32 1 -0.3633 0.5195 -0.8866 33 1 1.2887 -0.7953 2.0191 34 1 2.9602 -0.2830 1.6224 35 1 4.3112 -2.4423 1.2759 36 1 2.4199 -4.6845 1.5653 37 1 3.5619 -4.4955 0.2131 38 1 4.0773 -6.8081 1.4979 39 1 6.8909 -9.7394 3.4625 40 1 2.7176 -2.7049 -1.3936 41 1 3.9123 -1.5589 -0.7118 42 1 2.0106 -2.2341 -3.5038 43 1 3.4489 -1.1856 -3.5200 44 1 3.5433 -1.3535 -5.9590 45 1 2.1044 -2.4010 -5.9429 46 1 1.7684 0.3707 -7.1883 47 1 0.7864 -2.5331 -7.8523 48 1 0.2445 -0.9854 -8.6966 49 1 2.6400 -0.5280 -9.3944 50 1 3.1818 -2.0753 -8.5499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755670234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:41 Heat of formation + Delta-G solvation = -77.075742 kcal Electronic energy + Delta-G solvation = -29070.537138 eV Core-core repulsion = 24906.118192 eV Total energy + Delta-G solvation = -4164.418946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.63983 -39.01213 -38.52314 -37.82565 -36.67296 -34.96292 -33.92138 -32.46138 -31.73680 -30.09526 -29.04342 -26.71643 -26.42022 -26.00364 -23.93907 -22.83034 -22.52052 -21.22653 -20.94617 -19.50246 -19.30053 -18.46574 -17.74118 -16.95258 -16.81130 -16.54145 -16.04291 -15.86961 -15.45888 -15.09424 -14.90223 -14.82112 -14.38608 -14.08378 -13.86324 -13.68055 -13.51745 -13.21664 -13.08368 -12.91640 -12.74857 -12.61884 -12.40851 -12.22150 -12.16166 -11.98077 -11.88065 -11.61430 -11.51252 -11.23344 -11.13460 -10.90885 -10.86008 -10.73878 -10.65417 -10.03464 -9.98892 -9.96339 -9.64007 -8.99779 -8.69682 -8.32193 -8.23974 -6.36934 -3.88771 2.28357 2.32772 2.97014 3.00788 3.10267 3.19211 3.47581 3.65351 3.86361 4.04330 4.15606 4.27577 4.36991 4.42855 4.50885 4.63691 4.66806 4.72153 4.78259 4.81293 4.83444 4.85148 5.00823 5.01656 5.09902 5.15415 5.17255 5.19507 5.26316 5.38973 5.44157 5.46234 5.51270 5.65496 5.68381 5.70271 5.73891 5.77269 5.85781 5.88722 6.02164 6.17597 6.65293 6.91444 7.17377 7.38002 7.51278 7.89584 8.07811 8.52681 8.88592 9.35655 9.74768 10.76023 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009457 B = 0.002270 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.905533 B =12331.592887 C =14710.365258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.137 3.863 3 H 0.077 0.923 4 C -0.117 4.117 5 C 0.080 3.920 6 H 0.096 0.904 7 N -0.651 5.651 8 C 0.046 3.954 9 C 0.448 3.552 10 O -0.564 6.564 11 N -0.589 5.589 12 C -0.306 4.306 13 H 0.120 0.880 14 C 0.041 3.959 15 N -0.879 5.879 16 Si 0.880 3.120 17 H -0.271 1.271 18 H -0.276 1.276 19 H -0.269 1.269 20 C 0.062 3.938 21 N -0.611 5.611 22 C 0.532 3.468 23 O -0.517 6.517 24 C 0.048 3.952 25 O -0.361 6.361 26 C 0.091 3.909 27 C -0.154 4.154 28 C -0.177 4.177 29 C -0.173 4.173 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.355 0.645 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.370 0.630 39 H 0.274 0.726 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.116 0.884 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.242 13.171 -19.236 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.034 3.966 3 H 0.096 0.904 4 C -0.155 4.155 5 C -0.032 4.032 6 H 0.114 0.886 7 N -0.283 5.283 8 C -0.087 4.087 9 C 0.233 3.767 10 O -0.446 6.446 11 N -0.228 5.228 12 C -0.435 4.435 13 H 0.138 0.862 14 C -0.162 4.162 15 N -0.519 5.519 16 Si 0.706 3.294 17 H -0.197 1.197 18 H -0.201 1.201 19 H -0.195 1.195 20 C -0.064 4.064 21 N -0.348 5.348 22 C 0.319 3.681 23 O -0.392 6.392 24 C -0.032 4.032 25 O -0.279 6.279 26 C 0.015 3.985 27 C -0.172 4.172 28 C -0.214 4.214 29 C -0.210 4.210 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.176 0.824 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.203 0.797 39 H 0.084 0.916 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.134 0.866 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.514 14.101 -18.350 26.309 hybrid contribution -0.137 -1.533 -1.684 2.282 sum -12.651 12.568 -20.034 26.821 Atomic orbital electron populations 1.22157 0.94528 1.02409 1.03051 1.21634 0.94891 0.96352 0.83750 0.90450 1.22740 1.02693 0.94160 0.95955 1.22801 0.96171 0.95775 0.88441 0.88589 1.60119 1.08708 1.02687 1.56790 1.21779 1.00132 0.88831 0.97938 1.19661 0.87413 0.82712 0.86882 1.90579 1.48405 1.61999 1.43623 1.42204 1.32258 1.06108 1.42250 1.19428 1.09763 0.91684 1.22604 0.86244 1.25053 0.97036 0.96567 0.97522 1.69619 1.31147 1.11693 1.39460 0.86669 0.80524 0.81117 0.81049 1.19665 1.20132 1.19472 1.23360 0.95574 0.89006 0.98448 1.48411 1.50863 1.30862 1.04703 1.19830 0.81150 0.85110 0.82013 1.90719 1.37392 1.28221 1.82871 1.22167 0.99665 0.96983 0.84347 1.87989 1.73630 1.54202 1.12070 1.22089 0.97588 0.94531 0.84315 1.22105 1.04901 1.00490 0.89688 1.23085 0.93617 1.01243 1.03442 1.22992 0.97358 1.03534 0.97146 0.92460 0.91472 0.91185 0.89139 0.89722 0.82429 0.89235 0.93606 0.79697 0.91553 0.90594 0.90650 0.90294 0.90204 0.92522 0.92872 0.86630 0.88609 0.88500 0.88287 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.05 37.16 0.34 -1.20 16 2 C 0.14 1.30 3.51 -66.95 -0.23 1.07 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -1.05 6.18 -24.89 -0.15 -1.20 16 5 C 0.08 0.77 3.32 -65.56 -0.22 0.55 16 6 H 0.10 0.88 7.92 -51.93 -0.41 0.47 16 7 N -0.65 -8.47 6.00 -105.72 -0.63 -9.11 16 8 C 0.05 0.66 6.04 -4.98 -0.03 0.63 16 9 C 0.45 9.44 7.82 -10.98 -0.09 9.36 16 10 O -0.56 -14.34 15.78 5.55 0.09 -14.26 16 11 N -0.59 -13.27 5.09 -10.96 -0.06 -13.32 16 12 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 16 13 H 0.12 3.76 7.39 -52.49 -0.39 3.37 16 14 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 15 N -0.88 -25.10 13.96 55.50 0.77 -24.32 16 16 Si 0.88 18.64 27.74 -169.99 -4.71 13.92 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.27 -5.15 6.52 56.52 0.37 -4.78 16 20 C 0.06 0.52 6.27 -2.53 -0.02 0.50 16 21 N -0.61 -6.09 3.08 -163.01 -0.50 -6.59 16 22 C 0.53 6.30 7.71 -10.99 -0.08 6.21 16 23 O -0.52 -8.12 15.39 -14.35 -0.22 -8.34 16 24 C 0.05 0.44 5.42 36.01 0.20 0.64 16 25 O -0.36 -4.03 9.88 -55.14 -0.54 -4.58 16 26 C 0.09 0.73 6.22 37.16 0.23 0.96 16 27 C -0.15 -1.18 6.06 -90.62 -0.55 -1.73 16 28 C -0.18 -1.15 10.18 -26.73 -0.27 -1.42 16 29 C -0.17 -1.02 10.25 -26.73 -0.27 -1.29 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.81 6.74 -51.93 -0.35 0.46 16 33 H 0.09 0.77 7.83 -51.93 -0.41 0.36 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.35 4.78 8.00 -39.29 -0.31 4.46 16 36 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.37 7.25 5.76 -40.82 -0.24 7.01 16 39 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.08 0.54 7.48 -51.93 -0.39 0.15 16 41 H 0.08 0.62 7.80 -51.93 -0.41 0.21 16 42 H 0.08 0.57 7.85 -51.93 -0.41 0.16 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.36 7.87 -51.93 -0.41 -0.05 16 46 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 49 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 409.96 15.07 6.18 6.18 Total: -1.00 -34.57 409.96 -9.41 -43.98 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -8.37 Total: 10.89 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: -1.40 Total: 5.56 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.42 Total: -53.35 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.68 Total: -27.18 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.71 Total: 13.92 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.57 -9.41 -43.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755670234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.100 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds