Wall clock time and date at job start Tue Mar 31 2020 23:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.99675 * 2 1 4 4 C 1.54327 * 109.78057 * 121.16993 * 2 1 3 5 5 C 1.55160 * 103.02193 * 97.49241 * 4 2 1 6 6 H 1.08997 * 111.00457 * 277.23126 * 5 4 2 7 7 N 1.46903 * 111.00561 * 153.38214 * 5 4 2 8 8 C 1.46898 * 110.99798 * 161.35197 * 7 5 4 9 9 C 1.50700 * 109.46890 * 179.97438 * 8 7 5 10 10 O 1.21294 * 119.99947 * 0.02562 * 9 8 7 11 11 N 1.34781 * 120.00407 * 179.97438 * 9 8 7 12 12 C 1.37094 * 120.00427 * 179.97438 * 11 9 8 13 13 H 1.08001 * 119.99913 * 359.97438 * 12 11 9 14 14 C 1.38951 * 120.00124 * 179.97438 * 12 11 9 15 15 N 1.31408 * 119.99953 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99865 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47234 * 89.99790 * 16 14 12 18 18 H 1.48497 * 109.47002 * 210.00083 * 16 14 12 19 19 H 1.48503 * 109.46929 * 329.99518 * 16 14 12 20 20 C 1.54911 * 101.58095 * 35.30743 * 5 4 2 21 21 N 1.47026 * 109.87833 * 238.90682 * 2 1 3 22 22 C 1.34779 * 125.64829 * 59.55803 * 21 2 1 23 23 O 1.21282 * 119.99922 * 359.72077 * 22 21 2 24 24 C 1.50699 * 120.00037 * 179.71645 * 22 21 2 25 25 O 1.42905 * 109.46972 * 180.02562 * 24 22 21 26 26 C 1.42899 * 113.99778 * 180.02562 * 25 24 22 27 27 C 1.52999 * 109.46889 * 179.97438 * 26 25 24 28 28 C 1.53003 * 117.50215 * 243.62115 * 27 26 25 29 29 C 1.53000 * 117.49963 * 174.99838 * 27 26 25 30 30 H 1.08999 * 109.47576 * 179.64088 * 1 2 3 31 31 H 1.09000 * 109.46636 * 299.63632 * 1 2 3 32 32 H 1.08994 * 109.46978 * 59.63411 * 1 2 3 33 33 H 1.08998 * 110.85443 * 339.02942 * 4 2 1 34 34 H 1.08999 * 110.67229 * 215.87348 * 4 2 1 35 35 H 1.00901 * 110.99691 * 285.30379 * 7 5 4 36 36 H 1.08999 * 109.47215 * 299.99180 * 8 7 5 37 37 H 1.08998 * 109.47480 * 59.99799 * 8 7 5 38 38 H 0.96998 * 119.99573 * 359.97438 * 11 9 8 39 39 H 0.97001 * 119.99744 * 179.97438 * 15 14 12 40 40 H 1.09007 * 110.36622 * 204.15309 * 20 5 4 41 41 H 1.08998 * 110.36731 * 81.82660 * 20 5 4 42 42 H 1.09000 * 109.47247 * 60.00371 * 24 22 21 43 43 H 1.09001 * 109.47358 * 299.99798 * 24 22 21 44 44 H 1.08997 * 109.47171 * 299.99768 * 26 25 24 45 45 H 1.08997 * 109.47442 * 59.99964 * 26 25 24 46 46 H 1.09003 * 115.55052 * 29.33340 * 27 26 25 47 47 H 1.09004 * 117.49403 * 359.97438 * 28 27 26 48 48 H 1.08994 * 117.50232 * 145.02224 * 28 27 26 49 49 H 1.08998 * 117.50223 * 214.98211 * 29 27 26 50 50 H 1.09008 * 117.49765 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0523 -0.7516 1.2426 5 6 2.3561 -2.1698 0.6912 6 1 1.4522 -2.7779 0.6577 7 7 3.4028 -2.8296 1.4832 8 6 3.3885 -4.2826 1.2680 9 6 4.4737 -4.9235 2.0942 10 8 5.1884 -4.2373 2.7939 11 7 4.6495 -6.2592 2.0566 12 6 5.6371 -6.8422 2.8078 13 1 6.2745 -6.2310 3.4295 14 6 5.8180 -8.2193 2.7694 15 7 6.7649 -8.7780 3.4891 16 14 4.7159 -9.2763 1.6935 17 1 5.3213 -9.4088 0.3440 18 1 4.5703 -10.6217 2.3050 19 1 3.3798 -8.6387 1.5762 20 6 2.8612 -1.8466 -0.7371 21 7 2.0300 -0.7140 -1.1840 22 6 1.7752 -0.3844 -2.4658 23 8 1.0746 0.5729 -2.7179 24 6 2.3610 -1.2052 -3.5856 25 8 1.9502 -0.6601 -4.8411 26 6 2.4536 -1.3690 -5.9752 27 6 1.9526 -0.7014 -7.2574 28 6 1.0336 -1.5193 -8.1672 29 6 2.4785 -1.2434 -8.5880 30 1 -0.3634 -1.0276 -0.0064 31 1 -0.3632 0.5082 0.8933 32 1 -0.3633 0.5195 -0.8866 33 1 1.2887 -0.7953 2.0191 34 1 2.9602 -0.2830 1.6224 35 1 4.3112 -2.4423 1.2759 36 1 2.4199 -4.6845 1.5653 37 1 3.5619 -4.4955 0.2131 38 1 4.0773 -6.8081 1.4979 39 1 6.8909 -9.7394 3.4625 40 1 2.7176 -2.7049 -1.3936 41 1 3.9123 -1.5589 -0.7118 42 1 2.0106 -2.2341 -3.5038 43 1 3.4489 -1.1856 -3.5200 44 1 3.5433 -1.3535 -5.9590 45 1 2.1044 -2.4010 -5.9429 46 1 1.7684 0.3707 -7.1883 47 1 0.7864 -2.5331 -7.8523 48 1 0.2445 -0.9854 -8.6966 49 1 2.6400 -0.5280 -9.3944 50 1 3.1818 -2.0753 -8.5499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755670234.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:41 Heat of formation + Delta-G solvation = -102.623228 kcal Electronic energy + Delta-G solvation = -29071.644960 eV Core-core repulsion = 24906.118192 eV Total energy + Delta-G solvation = -4165.526768 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.45642 -40.27498 -39.54029 -38.70586 -37.31644 -36.23661 -35.59498 -33.71387 -33.24184 -31.06008 -29.69235 -28.00372 -27.18843 -26.76542 -25.50076 -23.37616 -23.25612 -21.84528 -21.64876 -21.24170 -20.28472 -20.08952 -18.51192 -17.75118 -17.69738 -17.48431 -17.20057 -16.76892 -16.60450 -16.38427 -15.85953 -15.73025 -15.43568 -14.98510 -14.98153 -14.72380 -14.56879 -14.34880 -14.17530 -14.05501 -13.67826 -13.58168 -13.49039 -13.30875 -13.06352 -13.00397 -12.81769 -12.41159 -12.38337 -12.33599 -12.11059 -11.98545 -11.91443 -11.60239 -11.47480 -11.40762 -11.30518 -10.85874 -10.55930 -10.39726 -10.21657 -9.80549 -9.31538 -8.38260 -5.99116 1.32977 1.38432 1.47638 1.48211 1.56006 2.00548 2.26047 2.56661 2.75991 2.96215 3.18759 3.28222 3.45871 3.65342 3.77194 3.88213 3.94163 4.00884 4.07434 4.10051 4.13913 4.18299 4.21884 4.29149 4.31108 4.39573 4.45460 4.48094 4.58182 4.66260 4.66478 4.69917 4.76100 4.79016 4.96728 4.99415 5.06538 5.12027 5.19020 5.22315 5.29027 5.40910 5.55849 5.93540 6.04243 6.06326 6.34509 6.42528 6.62836 6.92103 7.06152 7.43950 8.01055 8.79361 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009457 B = 0.002270 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.905533 B =12331.592887 C =14710.365258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.134 3.866 3 H 0.067 0.933 4 C -0.110 4.110 5 C 0.085 3.915 6 H 0.111 0.889 7 N -0.668 5.668 8 C 0.060 3.940 9 C 0.448 3.552 10 O -0.615 6.615 11 N -0.591 5.591 12 C -0.327 4.327 13 H 0.054 0.946 14 C -0.018 4.018 15 N -0.936 5.936 16 Si 0.966 3.034 17 H -0.256 1.256 18 H -0.280 1.280 19 H -0.228 1.228 20 C 0.063 3.937 21 N -0.607 5.607 22 C 0.524 3.476 23 O -0.568 6.568 24 C 0.049 3.951 25 O -0.394 6.394 26 C 0.090 3.910 27 C -0.175 4.175 28 C -0.179 4.179 29 C -0.160 4.160 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.350 0.650 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.390 0.610 39 H 0.278 0.722 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.097 0.903 49 H 0.105 0.895 50 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.344 11.578 -21.716 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.026 4.026 6 H 0.129 0.871 7 N -0.300 5.300 8 C -0.072 4.072 9 C 0.236 3.764 10 O -0.500 6.500 11 N -0.233 5.233 12 C -0.456 4.456 13 H 0.072 0.928 14 C -0.217 4.217 15 N -0.577 5.577 16 Si 0.786 3.214 17 H -0.180 1.180 18 H -0.205 1.205 19 H -0.151 1.151 20 C -0.062 4.062 21 N -0.342 5.342 22 C 0.313 3.687 23 O -0.446 6.446 24 C -0.030 4.030 25 O -0.313 6.313 26 C 0.014 3.986 27 C -0.194 4.194 28 C -0.216 4.216 29 C -0.197 4.197 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.170 0.830 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.226 0.774 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.098 0.902 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.116 0.884 49 H 0.124 0.876 50 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.627 12.516 -20.834 28.366 hybrid contribution 0.591 -0.882 -0.818 1.340 sum -14.036 11.635 -21.652 28.305 Atomic orbital electron populations 1.22085 0.94308 1.02566 1.02484 1.21650 0.95045 0.96096 0.84070 0.91522 1.22677 1.02636 0.93877 0.95668 1.22795 0.95521 0.95649 0.88590 0.87126 1.60083 1.09289 1.02219 1.58406 1.21717 0.97962 0.89005 0.98474 1.21059 0.87585 0.81976 0.85804 1.90563 1.50595 1.63124 1.45668 1.42028 1.31828 1.07007 1.42438 1.18990 1.11096 0.91945 1.23568 0.92764 1.26151 0.98746 0.97747 0.99022 1.69813 1.33704 1.12386 1.41813 0.85356 0.79623 0.77965 0.78506 1.18036 1.20520 1.15089 1.23439 0.95395 0.89217 0.98111 1.48446 1.50425 1.31022 1.04346 1.20429 0.80496 0.84754 0.82978 1.90697 1.39769 1.30485 1.83654 1.22291 1.00636 0.97327 0.82741 1.87957 1.74445 1.55593 1.13344 1.22232 0.98237 0.94865 0.83271 1.22130 1.06729 0.99768 0.90734 1.23171 0.94106 1.01331 1.03010 1.23078 0.97074 1.03620 0.95933 0.91823 0.90045 0.93767 0.88382 0.90291 0.82986 0.86576 0.89512 0.77403 0.91257 0.88034 0.90232 0.87641 0.88118 0.91383 0.91436 0.88487 0.87915 0.88408 0.87641 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.05 71.98 0.65 -2.10 16 2 C 0.13 2.39 3.51 45.34 0.16 2.54 16 3 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 4 C -0.11 -1.73 6.18 31.79 0.20 -1.53 16 5 C 0.09 1.32 3.32 46.31 0.15 1.47 16 6 H 0.11 1.46 7.92 -2.39 -0.02 1.44 16 7 N -0.67 -15.34 6.00 -488.40 -2.93 -18.27 16 8 C 0.06 1.47 6.04 85.56 0.52 1.98 16 9 C 0.45 18.25 7.82 87.66 0.69 18.93 16 10 O -0.62 -31.85 15.78 -3.07 -0.05 -31.90 16 11 N -0.59 -25.79 5.09 -306.98 -1.56 -27.35 16 12 C -0.33 -18.37 10.16 84.04 0.85 -17.51 16 13 H 0.05 3.68 7.39 -2.91 -0.02 3.65 16 14 C -0.02 -0.98 5.50 84.93 0.47 -0.52 16 15 N -0.94 -55.24 13.96 21.66 0.30 -54.94 16 16 Si 0.97 36.79 27.74 68.60 1.90 38.69 16 17 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 18 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.23 -7.09 6.52 99.48 0.65 -6.44 16 20 C 0.06 0.82 6.27 86.86 0.54 1.37 16 21 N -0.61 -10.80 3.08 -788.03 -2.43 -13.23 16 22 C 0.52 11.76 7.71 87.66 0.68 12.44 16 23 O -0.57 -18.07 15.39 16.00 0.25 -17.83 16 24 C 0.05 0.78 5.42 71.24 0.39 1.17 16 25 O -0.39 -8.38 9.88 -129.94 -1.28 -9.67 16 26 C 0.09 1.27 6.22 71.98 0.45 1.72 16 27 C -0.18 -2.56 6.06 -10.79 -0.07 -2.62 16 28 C -0.18 -2.08 10.18 30.60 0.31 -1.77 16 29 C -0.16 -1.59 10.25 30.59 0.31 -1.28 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.04 1.03 6.74 -2.39 -0.02 1.01 16 33 H 0.10 1.41 7.83 -2.39 -0.02 1.39 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.35 8.69 8.00 -89.69 -0.72 7.97 16 36 H 0.12 2.32 8.09 -2.39 -0.02 2.30 16 37 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.39 13.74 5.76 -92.71 -0.53 13.20 16 39 H 0.28 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.10 0.87 7.48 -2.38 -0.02 0.85 16 41 H 0.08 1.04 7.80 -2.39 -0.02 1.02 16 42 H 0.11 1.08 7.85 -2.39 -0.02 1.07 16 43 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.07 0.73 7.87 -2.39 -0.02 0.71 16 46 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.10 1.03 8.03 -2.38 -0.02 1.01 16 48 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.11 0.81 8.14 -2.38 -0.02 0.80 16 Total: -1.00 -82.87 409.96 0.14 -82.73 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.36 Total: 37.46 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: 6.30 Total: 14.29 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -6.62 Total: -113.79 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -1.09 Total: -59.39 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 1.90 Total: 38.69 kcal Total: -82.87 0.14 -82.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755670234.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.890 kcal (2) G-P(sol) polarization free energy of solvation -82.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds