Wall clock time and date at job start Tue Mar 31 2020 23:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 110.32729 * 2 1 4 4 C 1.54911 * 110.46072 * 237.70468 * 2 1 3 5 5 C 1.55154 * 101.58007 * 204.09943 * 4 2 1 6 6 H 1.08998 * 110.87657 * 277.06400 * 5 4 2 7 7 N 1.46901 * 110.71595 * 153.86595 * 5 4 2 8 8 C 1.46902 * 110.99844 * 160.02367 * 7 5 4 9 9 C 1.50702 * 109.47027 * 179.97438 * 8 7 5 10 10 O 1.21293 * 120.00255 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00004 * 180.02562 * 9 8 7 12 12 C 1.37092 * 119.99804 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00499 * 0.02562 * 12 11 9 14 14 C 1.38956 * 119.99671 * 179.72159 * 12 11 9 15 15 N 1.31414 * 120.00152 * 0.27554 * 14 12 11 16 16 Si 1.86803 * 119.99914 * 180.27723 * 14 12 11 17 17 H 1.48496 * 109.47187 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47141 * 119.99961 * 16 14 12 19 19 H 1.48498 * 109.47018 * 240.00007 * 16 14 12 20 20 C 1.54322 * 102.94425 * 35.50237 * 5 4 2 21 21 N 1.47017 * 107.27153 * 337.80888 * 20 5 4 22 22 C 1.34775 * 125.65317 * 178.90797 * 21 20 5 23 23 O 1.21282 * 120.00228 * 180.02562 * 22 21 20 24 24 C 1.50706 * 119.99783 * 0.02562 * 22 21 20 25 25 O 1.42901 * 109.47192 * 180.02562 * 24 22 21 26 26 C 1.42898 * 113.99718 * 179.97438 * 25 24 22 27 27 C 1.53001 * 109.46662 * 179.97438 * 26 25 24 28 28 C 1.52999 * 117.49858 * 243.74213 * 27 26 25 29 29 C 1.53000 * 117.49445 * 175.08491 * 27 26 25 30 30 H 1.08998 * 109.47217 * 299.21120 * 1 2 3 31 31 H 1.08996 * 109.47299 * 59.21738 * 1 2 3 32 32 H 1.08997 * 109.46664 * 179.21523 * 1 2 3 33 33 H 1.09002 * 111.00226 * 86.02907 * 4 2 1 34 34 H 1.08989 * 111.00588 * 322.17862 * 4 2 1 35 35 H 1.00894 * 111.00401 * 36.07266 * 7 5 4 36 36 H 1.09004 * 109.47131 * 60.00016 * 8 7 5 37 37 H 1.08994 * 109.47471 * 299.99766 * 8 7 5 38 38 H 0.97000 * 119.99715 * 359.97438 * 11 9 8 39 39 H 0.96991 * 119.99827 * 179.97438 * 15 14 12 40 40 H 1.09003 * 109.87889 * 97.21695 * 20 5 4 41 41 H 1.08994 * 109.88458 * 218.23039 * 20 5 4 42 42 H 1.09000 * 109.46784 * 300.00335 * 24 22 21 43 43 H 1.08996 * 109.47047 * 59.99730 * 24 22 21 44 44 H 1.09000 * 109.47056 * 299.99803 * 26 25 24 45 45 H 1.09002 * 109.47155 * 59.99966 * 26 25 24 46 46 H 1.09000 * 115.55086 * 29.42293 * 27 26 25 47 47 H 1.08998 * 117.49676 * 0.02562 * 28 27 26 48 48 H 1.09002 * 117.49563 * 145.01932 * 28 27 26 49 49 H 1.09003 * 117.50003 * 214.98044 * 29 27 26 50 50 H 1.08997 * 117.50173 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0715 -0.7754 -1.2269 5 6 3.4803 -1.1968 -0.7319 6 1 4.1983 -0.3884 -0.8696 7 7 3.9313 -2.4128 -1.4219 8 6 5.3907 -2.5566 -1.3354 9 6 5.8150 -3.8125 -2.0522 10 8 4.9836 -4.5181 -2.5833 11 7 7.1185 -4.1517 -2.1031 12 6 7.5045 -5.2939 -2.7556 13 1 6.7643 -5.9217 -3.2293 14 6 8.8490 -5.6405 -2.8130 15 7 9.7497 -4.8764 -2.2372 16 14 9.3758 -7.1928 -3.7088 17 1 8.1793 -7.8728 -4.2664 18 1 10.3029 -6.8367 -4.8128 19 1 10.0641 -8.1031 -2.7586 20 6 3.2510 -1.4738 0.7688 21 7 2.0432 -0.7373 1.1690 22 6 1.4953 -0.7367 2.4004 23 8 0.4929 -0.0896 2.6178 24 6 2.1284 -1.5401 3.5071 25 8 1.3691 -1.3791 4.7070 26 6 1.8870 -2.1043 5.8241 27 6 1.0004 -1.8588 7.0467 28 6 1.6301 -1.1441 8.2439 29 6 1.3223 -2.6415 8.3212 30 1 -0.3633 0.5015 0.8969 31 1 -0.3634 0.5259 -0.8828 32 1 -0.3632 -1.0276 -0.0141 33 1 2.1420 -0.1260 -2.0995 34 1 1.4551 -1.6485 -1.4404 35 1 3.6238 -2.4185 -2.3829 36 1 5.6883 -2.6180 -0.2885 37 1 5.8690 -1.6940 -1.7991 38 1 7.7834 -3.5873 -1.6786 39 1 10.6881 -5.1186 -2.2769 40 1 3.1044 -2.5418 0.9304 41 1 4.1081 -1.1260 1.3452 42 1 2.1460 -2.5934 3.2272 43 1 3.1477 -1.1910 3.6721 44 1 1.8995 -3.1692 5.5918 45 1 2.9013 -1.7670 6.0377 46 1 -0.0487 -1.6542 6.8331 47 1 2.6759 -0.8484 8.1605 48 1 0.9952 -0.4694 8.8183 49 1 0.4849 -2.9515 8.9465 50 1 2.1653 -3.3317 8.2887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755670237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:51 Heat of formation + Delta-G solvation = -81.775936 kcal Electronic energy + Delta-G solvation = -28972.936082 eV Core-core repulsion = 24808.313320 eV Total energy + Delta-G solvation = -4164.622762 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.51434 -38.86517 -38.35818 -37.66090 -36.57379 -34.84414 -33.85068 -32.37347 -31.30133 -30.09024 -28.91055 -26.63784 -26.23616 -25.89697 -24.11442 -22.76140 -22.17288 -21.09634 -20.92975 -19.42359 -19.03380 -17.94529 -17.57643 -17.10907 -16.70904 -16.29175 -16.20280 -15.79072 -15.20150 -14.90909 -14.82853 -14.58333 -14.45276 -14.10413 -13.84840 -13.70161 -13.55624 -13.30926 -12.98674 -12.65282 -12.49588 -12.35224 -12.30315 -12.05539 -11.91218 -11.71140 -11.58171 -11.46829 -11.33858 -11.18844 -11.10607 -10.90421 -10.82308 -10.64800 -10.38547 -10.27650 -9.87371 -9.64093 -9.57671 -8.81299 -8.57357 -8.23497 -8.02433 -6.47447 -3.88342 2.40323 2.45298 3.12343 3.23558 3.28853 3.30732 3.57602 3.83329 3.96986 4.14672 4.27102 4.30951 4.44840 4.50703 4.61451 4.73498 4.83183 4.84756 4.90994 4.94856 4.98862 5.03492 5.12060 5.16954 5.22813 5.25652 5.26557 5.28222 5.47544 5.49158 5.50804 5.56625 5.64076 5.72337 5.73468 5.81368 5.83280 5.85750 6.01863 6.04120 6.19588 6.35853 6.76463 7.06633 7.31413 7.49218 7.50295 8.00410 8.02605 8.54695 9.12250 9.47846 9.98774 10.70207 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010199 B = 0.002085 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2744.830738 B =13425.653715 C =15689.713577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 H 0.076 0.924 4 C -0.131 4.131 5 C 0.076 3.924 6 H 0.062 0.938 7 N -0.658 5.658 8 C 0.049 3.951 9 C 0.439 3.561 10 O -0.583 6.583 11 N -0.563 5.563 12 C -0.299 4.299 13 H 0.104 0.896 14 C 0.022 3.978 15 N -0.901 5.901 16 Si 0.929 3.071 17 H -0.268 1.268 18 H -0.282 1.282 19 H -0.281 1.281 20 C 0.102 3.898 21 N -0.613 5.613 22 C 0.534 3.466 23 O -0.519 6.519 24 C 0.048 3.952 25 O -0.362 6.362 26 C 0.091 3.909 27 C -0.153 4.153 28 C -0.177 4.177 29 C -0.174 4.174 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.357 0.643 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.053 0.947 46 H 0.115 0.885 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.421 10.781 14.082 21.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.170 4.170 5 C -0.035 4.035 6 H 0.080 0.920 7 N -0.292 5.292 8 C -0.084 4.084 9 C 0.225 3.775 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.429 4.429 13 H 0.122 0.878 14 C -0.180 4.180 15 N -0.542 5.542 16 Si 0.757 3.243 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.022 4.022 21 N -0.350 5.350 22 C 0.322 3.678 23 O -0.395 6.395 24 C -0.032 4.032 25 O -0.280 6.280 26 C 0.015 3.985 27 C -0.171 4.171 28 C -0.214 4.214 29 C -0.211 4.211 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.178 0.822 36 H 0.104 0.896 37 H 0.064 0.936 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.133 0.867 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.117 0.883 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.631 10.319 14.480 22.404 hybrid contribution 1.621 0.021 -0.797 1.806 sum -12.010 10.340 13.683 20.937 Atomic orbital electron populations 1.22177 0.93648 1.02912 1.03575 1.21863 0.95458 0.95224 0.83740 0.90606 1.23074 0.95800 1.01085 0.97002 1.22474 0.96070 0.91770 0.93231 0.92039 1.60035 1.11368 1.35713 1.22060 1.21757 0.88152 0.97125 1.01353 1.19772 0.83460 0.88227 0.86068 1.90535 1.51319 1.54353 1.50483 1.41872 1.05733 1.23444 1.48890 1.19755 0.92477 1.00445 1.30218 0.87826 1.25275 0.95523 0.99372 0.97793 1.69614 1.02014 1.38416 1.44189 0.85798 0.78737 0.80943 0.78866 1.19193 1.20753 1.20717 1.22200 0.86466 0.97824 0.95679 1.48435 1.28512 1.49086 1.09012 1.19782 0.84198 0.81986 0.81814 1.90663 1.24559 1.42903 1.81359 1.22183 0.95387 1.00139 0.85516 1.87974 1.51953 1.70739 1.17315 1.22084 0.95850 0.95527 0.85080 1.22109 1.01018 1.05630 0.88349 1.23091 1.01851 0.94969 1.01529 1.22999 1.03735 0.94762 0.99561 0.89497 0.92036 0.92468 0.89684 0.89088 0.82231 0.89596 0.93577 0.77465 0.91882 0.89543 0.91411 0.89969 0.90265 0.92463 0.92891 0.86661 0.88618 0.88563 0.88329 0.88541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 8.71 37.16 0.32 -1.44 16 2 C 0.14 1.42 3.76 -66.42 -0.25 1.17 16 3 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 4 C -0.13 -1.23 5.94 -24.58 -0.15 -1.38 16 5 C 0.08 0.80 3.24 -65.88 -0.21 0.58 16 6 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 7 N -0.66 -9.25 5.92 -106.06 -0.63 -9.87 16 8 C 0.05 0.77 6.02 -4.97 -0.03 0.74 16 9 C 0.44 9.77 7.82 -10.98 -0.09 9.68 16 10 O -0.58 -15.12 15.78 5.55 0.09 -15.04 16 11 N -0.56 -13.65 5.29 -10.96 -0.06 -13.70 16 12 C -0.30 -8.11 9.68 -14.93 -0.14 -8.25 16 13 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 14 C 0.02 0.58 5.50 -17.46 -0.10 0.48 16 15 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 16 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C 0.10 1.04 6.17 -3.07 -0.02 1.02 16 21 N -0.61 -6.81 3.24 -163.05 -0.53 -7.33 16 22 C 0.53 6.81 7.71 -10.98 -0.08 6.73 16 23 O -0.52 -8.35 14.15 -14.35 -0.20 -8.55 16 24 C 0.05 0.49 5.61 36.01 0.20 0.69 16 25 O -0.36 -4.35 9.88 -55.14 -0.54 -4.89 16 26 C 0.09 0.80 6.22 37.16 0.23 1.04 16 27 C -0.15 -1.28 6.05 -90.62 -0.55 -1.83 16 28 C -0.18 -1.25 10.18 -26.69 -0.27 -1.52 16 29 C -0.17 -1.13 10.25 -26.69 -0.27 -1.40 16 30 H 0.09 1.12 5.89 -51.93 -0.31 0.81 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.95 8.06 -51.94 -0.42 0.53 16 35 H 0.36 5.23 8.20 -39.29 -0.32 4.90 16 36 H 0.09 1.22 8.13 -51.93 -0.42 0.80 16 37 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 39 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.09 0.97 8.03 -51.93 -0.42 0.56 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 46 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.10 0.62 8.03 -51.93 -0.42 0.21 16 48 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 412.30 15.07 6.21 6.21 Total: -1.00 -32.98 412.30 -9.81 -42.79 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -8.45 Total: 11.68 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -1.41 Total: 6.31 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.49 Total: -54.05 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.66 Total: -28.48 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -32.98 -9.81 -42.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755670237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.984 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds