Wall clock time and date at job start Tue Mar 31 2020 23:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00417 * 2 1 4 4 O 1.42898 * 109.47047 * 135.00183 * 3 2 1 5 5 C 1.42905 * 113.99669 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46965 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99748 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99677 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.53435 * 325.09670 * 9 8 6 11 11 C 1.53123 * 109.50280 * 85.19846 * 9 8 6 12 12 C 1.53117 * 109.16036 * 177.59509 * 11 9 8 13 13 C 1.53036 * 109.27488 * 302.34352 * 12 11 9 14 14 N 1.46843 * 109.52932 * 59.17965 * 13 12 11 15 15 C 1.46893 * 111.00305 * 174.15970 * 14 13 12 16 16 C 1.50704 * 109.47461 * 288.14109 * 15 14 13 17 17 O 1.21298 * 119.99373 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00651 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00015 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00500 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99661 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00051 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99796 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47030 * 89.99784 * 23 21 19 25 25 H 1.48505 * 109.47009 * 209.99715 * 23 21 19 26 26 H 1.48498 * 109.47115 * 329.99796 * 23 21 19 27 27 C 1.46846 * 111.19597 * 298.26162 * 14 13 12 28 28 H 1.09000 * 109.46145 * 301.71952 * 27 14 13 29 29 C 1.53008 * 109.46264 * 181.75502 * 27 14 13 30 30 H 1.08000 * 120.00647 * 180.02562 * 1 2 3 31 31 H 1.08008 * 119.99465 * 0.02562 * 1 2 3 32 32 H 1.08008 * 119.99465 * 179.97438 * 2 1 3 33 33 H 1.08994 * 109.46991 * 14.99658 * 3 2 1 34 34 H 1.09002 * 109.46667 * 255.00016 * 3 2 1 35 35 H 1.08995 * 109.47211 * 59.99492 * 5 4 3 36 36 H 1.09004 * 109.46928 * 299.99821 * 5 4 3 37 37 H 0.96996 * 120.00082 * 359.97438 * 8 6 5 38 38 H 1.09003 * 109.51938 * 297.49929 * 11 9 8 39 39 H 1.08993 * 109.52256 * 57.68618 * 11 9 8 40 40 H 1.08997 * 109.50411 * 62.28180 * 12 11 9 41 41 H 1.09002 * 109.50049 * 182.36365 * 12 11 9 42 42 H 1.09001 * 109.46109 * 299.16310 * 13 12 11 43 43 H 1.08998 * 109.46103 * 179.20005 * 13 12 11 44 44 H 1.09001 * 109.47384 * 48.14333 * 15 14 13 45 45 H 1.09002 * 109.47313 * 168.14151 * 15 14 13 46 46 H 0.97001 * 119.99417 * 0.02562 * 18 16 15 47 47 H 0.96998 * 120.00023 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.46776 * 67.37503 * 29 27 14 49 49 H 1.08998 * 109.47238 * 187.37845 * 29 27 14 50 50 H 1.08999 * 109.46521 * 307.38001 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9086 2.4347 1.0320 6 6 4.9941 2.2566 2.0620 7 8 5.0886 1.2108 2.6687 8 7 5.8592 3.2600 2.3096 9 6 6.9142 3.0870 3.3114 10 1 6.5422 2.4705 4.1296 11 6 8.1244 2.4054 2.6668 12 6 9.2438 2.2828 3.7043 13 6 9.5960 3.6746 4.2342 14 7 8.4061 4.2844 4.8414 15 6 8.7392 5.5629 5.4835 16 6 9.5336 5.3034 6.7376 17 8 9.7968 4.1652 7.0640 18 7 9.9524 6.3358 7.4958 19 6 10.6746 6.0996 8.6369 20 1 10.9083 5.0863 8.9281 21 6 11.1060 7.1642 9.4190 22 7 10.8221 8.3973 9.0645 23 14 12.0906 6.8424 10.9734 24 1 13.5390 6.8190 10.6459 25 1 11.8235 7.9194 11.9604 26 1 11.6922 5.5330 11.5495 27 6 7.3340 4.4555 3.8526 28 1 7.6929 5.0763 3.0316 29 6 6.1324 5.1321 4.5155 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3856 2.1160 0.2659 34 1 2.4756 1.4866 -0.9927 35 1 3.2692 3.2695 1.3190 36 1 4.3589 2.6393 0.0606 37 1 5.7834 4.0965 1.8246 38 1 7.8403 1.4124 2.3184 39 1 8.4726 3.0023 1.8240 40 1 8.9085 1.6537 4.5288 41 1 10.1230 1.8363 3.2399 42 1 9.9443 4.2991 3.4114 43 1 10.3830 3.5895 4.9836 44 1 9.3302 6.1706 4.7982 45 1 7.8207 6.0917 5.7382 46 1 9.7422 7.2460 7.2345 47 1 11.1235 9.1404 9.6102 48 1 6.3939 6.1559 4.7830 49 1 5.2920 5.1412 3.8214 50 1 5.8555 4.5811 5.4142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755714560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:49 Heat of formation + Delta-G solvation = -87.426131 kcal Electronic energy + Delta-G solvation = -29509.380247 eV Core-core repulsion = 25344.512475 eV Total energy + Delta-G solvation = -4164.867773 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.43123 -39.22372 -38.14774 -37.48905 -34.84540 -34.24998 -33.81740 -33.25531 -31.29451 -31.14525 -28.79403 -27.40657 -26.64400 -25.79832 -24.57169 -22.85987 -21.41627 -20.85965 -20.38650 -19.83572 -19.09397 -17.84928 -17.60494 -17.20054 -16.76590 -16.20569 -15.90318 -15.58672 -15.19530 -15.10456 -14.60250 -14.57684 -14.34203 -13.98005 -13.93616 -13.64308 -13.50064 -13.30415 -13.12786 -12.66309 -12.57076 -12.31639 -12.20777 -12.08015 -11.92222 -11.50879 -11.43598 -11.41992 -11.08969 -11.00819 -10.77053 -10.59933 -10.42274 -10.37185 -10.26056 -10.18350 -9.92790 -9.76008 -9.45283 -9.17637 -8.44606 -7.94517 -7.85043 -6.39419 -3.79838 1.68008 2.42159 2.56445 3.19461 3.27992 3.34221 3.61513 3.93614 4.00603 4.25202 4.38038 4.55534 4.61918 4.67285 4.71030 4.71757 4.78461 4.89170 5.04238 5.06389 5.09492 5.18444 5.27118 5.33549 5.36160 5.41829 5.54702 5.60454 5.71327 5.73305 5.89658 5.90899 6.02207 6.06609 6.09305 6.12601 6.17007 6.23009 6.27194 6.32408 6.43854 6.53416 6.62861 7.23518 7.32474 7.39855 7.57642 8.04278 8.09342 8.65049 9.21250 9.57677 10.10047 10.78465 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.001806 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.202909 B =15503.031869 C =15836.988437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.151 4.151 3 C 0.087 3.913 4 O -0.359 6.359 5 C 0.044 3.956 6 C 0.514 3.486 7 O -0.513 6.513 8 N -0.723 5.723 9 C 0.156 3.844 10 H 0.101 0.899 11 C -0.129 4.129 12 C -0.111 4.111 13 C 0.056 3.944 14 N -0.505 5.505 15 C 0.042 3.958 16 C 0.445 3.555 17 O -0.574 6.574 18 N -0.567 5.567 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.929 3.071 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.078 3.922 28 H 0.041 0.959 29 C -0.152 4.152 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.118 0.882 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.398 0.602 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.023 0.977 43 H 0.097 0.903 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.680 -5.767 -22.047 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.169 4.169 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.036 4.036 6 C 0.298 3.702 7 O -0.387 6.387 8 N -0.376 5.376 9 C 0.052 3.948 10 H 0.119 0.881 11 C -0.167 4.167 12 C -0.150 4.150 13 C -0.071 4.071 14 N -0.231 5.231 15 C -0.089 4.089 16 C 0.230 3.770 17 O -0.458 6.458 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.756 3.244 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.031 4.031 28 H 0.058 0.942 29 C -0.209 4.209 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.231 0.769 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.041 0.959 43 H 0.116 0.884 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.224 0.776 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.076 0.924 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.532 -7.628 -20.794 27.052 hybrid contribution 0.574 1.861 -0.477 2.005 sum -14.958 -5.766 -21.272 26.636 Atomic orbital electron populations 1.23851 0.95498 1.02378 0.99868 1.22713 0.95628 0.98182 1.00350 1.21622 0.88739 0.96309 0.92288 1.88062 1.44289 1.34862 1.60480 1.22209 0.93304 0.89386 0.98692 1.20155 0.82161 0.84154 0.83700 1.90765 1.72034 1.26708 1.49168 1.45910 1.32152 1.17169 1.42409 1.20977 0.86589 0.96653 0.90610 0.88106 1.21981 0.95367 1.00982 0.98409 1.21508 0.97518 0.97498 0.98445 1.22200 0.93044 0.94190 0.97687 1.61392 1.08246 1.23984 1.29439 1.21952 1.00521 0.90446 0.95986 1.19746 0.85008 0.86023 0.86204 1.90517 1.60446 1.21720 1.73090 1.41856 1.48429 1.07629 1.22459 1.19696 1.28670 0.94973 0.99334 0.87936 1.25238 0.98354 0.94659 0.99700 1.69609 1.46788 0.98240 1.39864 0.85872 0.79552 0.78124 0.80828 1.20481 1.20980 1.19424 1.21748 0.93259 0.94502 0.93638 0.94164 1.21979 0.96497 1.00759 1.01662 0.87652 0.88398 0.86368 0.92513 0.92096 0.90190 0.90255 0.76861 0.91417 0.92343 0.90464 0.91384 0.95852 0.88444 0.93446 0.88792 0.77596 0.91961 0.91954 0.92362 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.03 14.31 29.02 0.42 -0.61 16 2 C -0.15 -1.09 9.89 -36.02 -0.36 -1.44 16 3 C 0.09 0.60 6.35 36.01 0.23 0.83 16 4 O -0.36 -3.78 9.86 -55.14 -0.54 -4.32 16 5 C 0.04 0.34 6.42 36.01 0.23 0.57 16 6 C 0.51 5.77 7.87 -10.99 -0.09 5.69 16 7 O -0.51 -8.44 16.16 -14.35 -0.23 -8.68 16 8 N -0.72 -6.62 4.29 -53.72 -0.23 -6.85 16 9 C 0.16 1.89 2.05 -67.84 -0.14 1.75 16 10 H 0.10 1.55 7.58 -51.93 -0.39 1.16 16 11 C -0.13 -1.54 5.58 -26.61 -0.15 -1.69 16 12 C -0.11 -1.52 6.09 -26.65 -0.16 -1.68 16 13 C 0.06 0.88 5.11 -3.84 -0.02 0.86 16 14 N -0.51 -8.16 4.12 -228.13 -0.94 -9.10 16 15 C 0.04 0.73 5.26 -4.98 -0.03 0.70 16 16 C 0.45 10.38 7.47 -10.99 -0.08 10.30 16 17 O -0.57 -15.40 14.42 5.54 0.08 -15.32 16 18 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 19 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 27 C 0.08 0.95 2.02 -67.72 -0.14 0.81 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 C -0.15 -1.70 8.52 37.16 0.32 -1.38 16 30 H 0.11 0.49 8.06 -52.49 -0.42 0.07 16 31 H 0.10 0.45 7.90 -52.48 -0.41 0.04 16 32 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.06 0.31 7.86 -51.93 -0.41 -0.10 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.40 2.31 8.46 -40.82 -0.35 1.96 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 1.86 6.35 -51.93 -0.33 1.53 16 44 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 45 H 0.09 1.47 5.55 -51.93 -0.29 1.19 16 46 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 47 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 48 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 49 H 0.06 0.51 7.31 -51.93 -0.38 0.13 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 406.57 15.07 6.13 6.13 Total: -1.00 -34.81 406.57 -8.52 -43.33 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -8.22 Total: 9.99 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: -0.21 Total: 6.78 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.50 Total: -53.99 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.70 Total: -28.31 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.81 -8.52 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.095 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds