Wall clock time and date at job start Tue Mar 31 2020 23:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50702 * 120.00417 * 2 1 4 4 O 1.42898 * 109.47047 * 135.00183 * 3 2 1 5 5 C 1.42905 * 113.99669 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.46965 * 179.97438 * 5 4 3 7 7 O 1.21280 * 120.00161 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99748 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99677 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.53435 * 325.09670 * 9 8 6 11 11 C 1.53123 * 109.50280 * 85.19846 * 9 8 6 12 12 C 1.53117 * 109.16036 * 177.59509 * 11 9 8 13 13 C 1.53036 * 109.27488 * 302.34352 * 12 11 9 14 14 N 1.46843 * 109.52932 * 59.17965 * 13 12 11 15 15 C 1.46893 * 111.00305 * 174.15970 * 14 13 12 16 16 C 1.50704 * 109.47461 * 288.14109 * 15 14 13 17 17 O 1.21298 * 119.99373 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00651 * 179.97438 * 16 15 14 19 19 C 1.37096 * 120.00015 * 179.97438 * 18 16 15 20 20 H 1.07994 * 120.00500 * 0.02562 * 19 18 16 21 21 C 1.38958 * 119.99661 * 180.02562 * 19 18 16 22 22 N 1.31410 * 120.00051 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99796 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47030 * 89.99784 * 23 21 19 25 25 H 1.48505 * 109.47009 * 209.99715 * 23 21 19 26 26 H 1.48498 * 109.47115 * 329.99796 * 23 21 19 27 27 C 1.46846 * 111.19597 * 298.26162 * 14 13 12 28 28 H 1.09000 * 109.46145 * 301.71952 * 27 14 13 29 29 C 1.53008 * 109.46264 * 181.75502 * 27 14 13 30 30 H 1.08000 * 120.00647 * 180.02562 * 1 2 3 31 31 H 1.08008 * 119.99465 * 0.02562 * 1 2 3 32 32 H 1.08008 * 119.99465 * 179.97438 * 2 1 3 33 33 H 1.08994 * 109.46991 * 14.99658 * 3 2 1 34 34 H 1.09002 * 109.46667 * 255.00016 * 3 2 1 35 35 H 1.08995 * 109.47211 * 59.99492 * 5 4 3 36 36 H 1.09004 * 109.46928 * 299.99821 * 5 4 3 37 37 H 0.96996 * 120.00082 * 359.97438 * 8 6 5 38 38 H 1.09003 * 109.51938 * 297.49929 * 11 9 8 39 39 H 1.08993 * 109.52256 * 57.68618 * 11 9 8 40 40 H 1.08997 * 109.50411 * 62.28180 * 12 11 9 41 41 H 1.09002 * 109.50049 * 182.36365 * 12 11 9 42 42 H 1.09001 * 109.46109 * 299.16310 * 13 12 11 43 43 H 1.08998 * 109.46103 * 179.20005 * 13 12 11 44 44 H 1.09001 * 109.47384 * 48.14333 * 15 14 13 45 45 H 1.09002 * 109.47313 * 168.14151 * 15 14 13 46 46 H 0.97001 * 119.99417 * 0.02562 * 18 16 15 47 47 H 0.96998 * 120.00023 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.46776 * 67.37503 * 29 27 14 49 49 H 1.08998 * 109.47238 * 187.37845 * 29 27 14 50 50 H 1.08999 * 109.46521 * 307.38001 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 8 3.1268 1.2411 0.9526 5 6 3.9086 2.4347 1.0320 6 6 4.9941 2.2566 2.0620 7 8 5.0886 1.2108 2.6687 8 7 5.8592 3.2600 2.3096 9 6 6.9142 3.0870 3.3114 10 1 6.5422 2.4705 4.1296 11 6 8.1244 2.4054 2.6668 12 6 9.2438 2.2828 3.7043 13 6 9.5960 3.6746 4.2342 14 7 8.4061 4.2844 4.8414 15 6 8.7392 5.5629 5.4835 16 6 9.5336 5.3034 6.7376 17 8 9.7968 4.1652 7.0640 18 7 9.9524 6.3358 7.4958 19 6 10.6746 6.0996 8.6369 20 1 10.9083 5.0863 8.9281 21 6 11.1060 7.1642 9.4190 22 7 10.8221 8.3973 9.0645 23 14 12.0906 6.8424 10.9734 24 1 13.5390 6.8190 10.6459 25 1 11.8235 7.9194 11.9604 26 1 11.6922 5.5330 11.5495 27 6 7.3340 4.4555 3.8526 28 1 7.6929 5.0763 3.0316 29 6 6.1324 5.1321 4.5155 30 1 -0.5401 -0.9352 0.0004 31 1 -0.5400 0.9354 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 1.3856 2.1160 0.2659 34 1 2.4756 1.4866 -0.9927 35 1 3.2692 3.2695 1.3190 36 1 4.3589 2.6393 0.0606 37 1 5.7834 4.0965 1.8246 38 1 7.8403 1.4124 2.3184 39 1 8.4726 3.0023 1.8240 40 1 8.9085 1.6537 4.5288 41 1 10.1230 1.8363 3.2399 42 1 9.9443 4.2991 3.4114 43 1 10.3830 3.5895 4.9836 44 1 9.3302 6.1706 4.7982 45 1 7.8207 6.0917 5.7382 46 1 9.7422 7.2460 7.2345 47 1 11.1235 9.1404 9.6102 48 1 6.3939 6.1559 4.7830 49 1 5.2920 5.1412 3.8214 50 1 5.8555 4.5811 5.4142 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755714560.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:48 Heat of formation + Delta-G solvation = -113.588763 kcal Electronic energy + Delta-G solvation = -29510.514744 eV Core-core repulsion = 25344.512475 eV Total energy + Delta-G solvation = -4166.002269 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42330 -40.43680 -39.38177 -38.56647 -36.13252 -35.62253 -34.75653 -34.37215 -33.20529 -32.28177 -29.60394 -28.73056 -27.65318 -26.48882 -26.27453 -24.04283 -22.49997 -21.72300 -21.14844 -20.92630 -20.62701 -19.82990 -18.39189 -18.03642 -17.63089 -17.34102 -16.98163 -16.62459 -16.39083 -16.32738 -16.05994 -15.70379 -15.49588 -15.39172 -15.09029 -14.79963 -14.79253 -14.38976 -14.02825 -13.80790 -13.54366 -13.44681 -13.22367 -13.16524 -13.06205 -12.97416 -12.88208 -12.59999 -12.40035 -12.12745 -12.07720 -11.90494 -11.87219 -11.80143 -11.43138 -11.33273 -10.97397 -10.83178 -10.27604 -10.24234 -10.08127 -9.96944 -9.15986 -8.44443 -5.92340 1.19791 1.38333 1.41924 1.54328 1.59521 1.81945 2.10118 2.30284 2.75176 3.13904 3.22580 3.41257 3.59014 3.77534 3.78507 4.01879 4.07957 4.09211 4.18662 4.24351 4.27646 4.31415 4.34349 4.39144 4.42504 4.47961 4.52152 4.60085 4.62313 4.63688 4.83060 4.84076 4.94844 4.98845 4.99219 5.07312 5.23017 5.27468 5.36098 5.42785 5.45825 5.66623 5.70969 5.92101 6.10319 6.12774 6.26745 6.58764 6.64636 7.16618 7.27573 7.60773 8.17831 8.72928 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027146 B = 0.001806 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.202909 B =15503.031869 C =15836.988437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.085 3.915 4 O -0.400 6.400 5 C 0.047 3.953 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.703 5.703 9 C 0.162 3.838 10 H 0.059 0.941 11 C -0.119 4.119 12 C -0.107 4.107 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.057 3.943 16 C 0.441 3.559 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.990 3.010 24 H -0.271 1.271 25 H -0.270 1.270 26 H -0.276 1.276 27 C 0.083 3.917 28 H 0.073 0.927 29 C -0.150 4.150 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.113 0.887 36 H 0.115 0.885 37 H 0.420 0.580 38 H 0.056 0.944 39 H 0.086 0.914 40 H 0.045 0.955 41 H 0.084 0.916 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.874 -3.542 -24.515 29.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C 0.010 3.990 4 O -0.320 6.320 5 C -0.032 4.032 6 C 0.296 3.704 7 O -0.455 6.455 8 N -0.357 5.357 9 C 0.056 3.944 10 H 0.077 0.923 11 C -0.157 4.157 12 C -0.145 4.145 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.074 4.074 16 C 0.228 3.772 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.561 5.561 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.201 1.201 27 C -0.025 4.025 28 H 0.091 0.909 29 C -0.207 4.207 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.258 0.742 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.133 0.867 46 H 0.230 0.770 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.106 0.894 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.745 -5.337 -23.314 29.196 hybrid contribution 0.891 1.111 0.265 1.449 sum -15.854 -4.225 -23.049 28.292 Atomic orbital electron populations 1.24056 0.95074 1.03475 0.97902 1.22814 0.96346 0.98252 1.02263 1.21782 0.88306 0.96429 0.92519 1.88013 1.45540 1.36612 1.61811 1.22360 0.92527 0.89387 0.98893 1.20969 0.82624 0.83259 0.83557 1.90747 1.73726 1.29312 1.51675 1.45646 1.30811 1.17849 1.41401 1.20676 0.87240 0.96121 0.90318 0.92278 1.21884 0.94495 1.00954 0.98392 1.21449 0.98925 0.96076 0.98078 1.22079 0.92045 0.95567 0.97059 1.61264 1.09304 1.23660 1.31637 1.21788 1.00629 0.91555 0.93412 1.20876 0.84029 0.84928 0.87337 1.90495 1.61752 1.23441 1.74468 1.41907 1.48821 1.08279 1.22336 1.19624 1.30879 0.94269 1.01348 0.90621 1.25962 0.98746 0.94287 1.02101 1.69661 1.46961 0.98676 1.40791 0.84975 0.78340 0.77875 0.77418 1.19648 1.19508 1.20119 1.21802 0.92250 0.94857 0.93638 0.90902 1.21990 0.97077 1.00478 1.01179 0.86991 0.86874 0.87842 0.90730 0.90299 0.86949 0.86731 0.74212 0.92515 0.89534 0.93623 0.89769 0.93364 0.92715 0.90955 0.86662 0.77020 0.91376 0.91052 0.89369 0.93949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.69 14.31 67.79 0.97 -0.72 16 2 C -0.18 -2.46 9.89 25.65 0.25 -2.21 16 3 C 0.09 1.01 6.35 71.24 0.45 1.46 16 4 O -0.40 -7.90 9.86 -129.94 -1.28 -9.19 16 5 C 0.05 0.58 6.42 71.24 0.46 1.04 16 6 C 0.51 10.72 7.87 87.66 0.69 11.41 16 7 O -0.58 -19.51 16.16 16.01 0.26 -19.25 16 8 N -0.70 -11.04 4.29 -442.27 -1.90 -12.93 16 9 C 0.16 3.75 2.05 45.04 0.09 3.85 16 10 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 11 C -0.12 -2.70 5.58 30.67 0.17 -2.53 16 12 C -0.11 -2.96 6.09 30.65 0.19 -2.77 16 13 C 0.06 1.87 5.11 86.33 0.44 2.31 16 14 N -0.53 -16.89 4.12 -875.66 -3.61 -20.50 16 15 C 0.06 1.91 5.26 85.56 0.45 2.36 16 16 C 0.44 21.05 7.47 87.66 0.65 21.71 16 17 O -0.62 -34.66 14.42 -3.09 -0.04 -34.70 16 18 N -0.58 -29.52 5.29 -306.98 -1.62 -31.14 16 19 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.47 13.05 21.67 0.28 -49.19 16 23 Si 0.99 43.40 29.55 68.60 2.03 45.43 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 27 C 0.08 1.82 2.02 44.94 0.09 1.92 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 C -0.15 -2.99 8.52 71.98 0.61 -2.38 16 30 H 0.11 0.92 8.06 -2.91 -0.02 0.90 16 31 H 0.11 0.77 7.90 -2.91 -0.02 0.75 16 32 H 0.10 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.07 0.58 7.86 -2.39 -0.02 0.56 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.42 2.93 8.46 -92.71 -0.78 2.15 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.05 2.18 6.35 -2.39 -0.02 2.16 16 44 H 0.07 2.10 8.05 -2.39 -0.02 2.08 16 45 H 0.12 3.39 5.55 -2.39 -0.01 3.37 16 46 H 0.40 19.11 7.90 -92.71 -0.73 18.38 16 47 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 48 H 0.07 1.31 6.43 -2.39 -0.02 1.29 16 49 H 0.09 1.21 7.31 -2.39 -0.02 1.20 16 50 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -81.69 406.57 0.35 -81.33 By element: Atomic # 1 Polarization: 33.57 SS G_CDS: -0.57 Total: 33.00 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.80 Total: 17.13 kcal Atomic # 7 Polarization: -106.91 SS G_CDS: -6.84 Total: -113.76 kcal Atomic # 8 Polarization: -62.08 SS G_CDS: -1.07 Total: -63.14 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -81.69 0.35 -81.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714560.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.254 kcal (2) G-P(sol) polarization free energy of solvation -81.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds