Wall clock time and date at job start Tue Mar 31 2020 23:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99827 * 2 1 4 4 O 1.42898 * 109.46926 * 134.99890 * 3 2 1 5 5 C 1.42896 * 114.00009 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47432 * 180.02562 * 5 4 3 7 7 O 1.21290 * 119.99500 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00578 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00202 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.50405 * 325.07484 * 9 8 6 11 11 C 1.53115 * 109.49999 * 85.19929 * 9 8 6 12 12 C 1.53110 * 109.16600 * 62.28562 * 11 9 8 13 13 C 1.53036 * 109.27768 * 57.65099 * 12 11 9 14 14 N 1.46843 * 109.52595 * 300.82241 * 13 12 11 15 15 C 1.46901 * 111.00233 * 185.83714 * 14 13 12 16 16 C 1.50696 * 109.47322 * 301.25359 * 15 14 13 17 17 O 1.21289 * 120.00003 * 354.38181 * 16 15 14 18 18 N 1.34774 * 120.00100 * 174.38297 * 16 15 14 19 19 C 1.37096 * 119.99933 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00240 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99617 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00428 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99565 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47458 * 89.99829 * 23 21 19 25 25 H 1.48504 * 109.46850 * 209.99817 * 23 21 19 26 26 H 1.48497 * 109.47354 * 329.99462 * 23 21 19 27 27 C 1.46848 * 111.19799 * 61.74177 * 14 13 12 28 28 H 1.08997 * 109.45383 * 58.27162 * 27 14 13 29 29 C 1.53001 * 109.46248 * 178.24299 * 27 14 13 30 30 H 1.08000 * 120.00020 * 0.02562 * 1 2 3 31 31 H 1.07994 * 119.99629 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00020 * 179.97438 * 2 1 3 33 33 H 1.08997 * 109.46987 * 15.00102 * 3 2 1 34 34 H 1.08995 * 109.47151 * 254.99937 * 3 2 1 35 35 H 1.09006 * 109.47349 * 299.99618 * 5 4 3 36 36 H 1.09004 * 109.47587 * 60.00191 * 5 4 3 37 37 H 0.96995 * 119.99790 * 359.97438 * 8 6 5 38 38 H 1.09001 * 109.51889 * 182.19217 * 11 9 8 39 39 H 1.09002 * 109.52600 * 302.37407 * 11 9 8 40 40 H 1.08999 * 109.50726 * 297.71341 * 12 11 9 41 41 H 1.08997 * 109.54189 * 177.61424 * 12 11 9 42 42 H 1.09007 * 109.46083 * 180.80600 * 13 12 11 43 43 H 1.09005 * 109.46523 * 60.83936 * 13 12 11 44 44 H 1.09006 * 109.46927 * 61.25755 * 15 14 13 45 45 H 1.09006 * 109.47221 * 181.25068 * 15 14 13 46 46 H 0.97003 * 120.00164 * 0.02562 * 18 16 15 47 47 H 0.97001 * 120.00065 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.47026 * 173.68255 * 29 27 14 49 49 H 1.08993 * 109.47271 * 293.68437 * 29 27 14 50 50 H 1.09004 * 109.47333 * 53.68949 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0329 6 6 4.9940 2.2568 2.0620 7 8 5.0897 1.2102 2.6675 8 7 5.8593 3.2601 2.3096 9 6 6.9150 3.0867 3.3104 10 1 6.5431 2.4700 4.1286 11 6 8.1247 2.4056 2.6646 12 6 8.6764 3.3064 1.5563 13 6 9.0454 4.6682 2.1488 14 7 7.8549 5.2792 2.7536 15 6 8.1390 6.6463 3.2101 16 6 9.2614 6.6173 4.2152 17 8 9.7057 5.5555 4.5976 18 7 9.7716 7.7712 4.6891 19 6 10.7924 7.7448 5.6039 20 1 11.1880 6.7993 5.9444 21 6 11.3180 8.9345 6.0928 22 7 10.8371 10.0849 5.6781 23 14 12.7094 8.8985 7.3388 24 1 14.0123 8.9048 6.6262 25 1 12.6192 10.0933 8.2161 26 1 12.6027 7.6689 8.1645 27 6 7.3351 4.4550 3.8522 28 1 8.1109 4.3243 4.6065 29 6 6.1245 5.1480 4.4807 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5399 -0.9353 -0.0004 32 1 1.8501 -0.9353 0.0004 33 1 1.3855 2.1160 0.2660 34 1 2.4755 1.4868 -0.9926 35 1 4.3580 2.6409 0.0618 36 1 3.2677 3.2695 1.3206 37 1 5.7830 4.0969 1.8251 38 1 8.8952 2.2412 3.4178 39 1 7.8202 1.4493 2.2391 40 1 7.9187 3.4389 0.7840 41 1 9.5635 2.8467 1.1206 42 1 9.4253 5.3169 1.3594 43 1 9.8132 4.5366 2.9113 44 1 8.4300 7.2607 2.3580 45 1 7.2468 7.0673 3.6737 46 1 9.4161 8.6204 4.3835 47 1 11.2038 10.9154 6.0198 48 1 5.6708 4.4875 5.2196 49 1 6.4449 6.0700 4.9656 50 1 5.3951 5.3802 3.7046 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755714562.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:28:55 Heat of formation + Delta-G solvation = -112.032840 kcal Electronic energy + Delta-G solvation = -30272.321275 eV Core-core repulsion = 26106.386475 eV Total energy + Delta-G solvation = -4165.934800 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64837 -40.53017 -39.19043 -38.41006 -36.13236 -35.25622 -34.73155 -34.12861 -33.28118 -32.38980 -29.49274 -28.73951 -27.63456 -26.46681 -26.23826 -23.94772 -22.66644 -21.96347 -21.04446 -20.84905 -20.32793 -19.66132 -18.38887 -17.93382 -17.52387 -17.37330 -16.92561 -16.60701 -16.44312 -16.30476 -15.95163 -15.85151 -15.61114 -15.25668 -15.08524 -14.99240 -14.45600 -14.32717 -13.99406 -13.75735 -13.53613 -13.22767 -13.13852 -13.10139 -13.01521 -12.93688 -12.86412 -12.53671 -12.43504 -12.25540 -12.12617 -11.85997 -11.79171 -11.54163 -11.35425 -11.18383 -10.95175 -10.93690 -10.76792 -10.22877 -9.98164 -9.97630 -9.01331 -8.46250 -5.95372 1.22294 1.34837 1.39797 1.51211 1.66551 1.98402 2.04618 2.28115 2.92481 3.17915 3.20388 3.28737 3.69475 3.84616 3.86703 4.02335 4.11016 4.16246 4.20821 4.30287 4.34660 4.38802 4.42402 4.49244 4.50450 4.60078 4.64034 4.65491 4.72314 4.75297 4.82251 4.93151 5.00478 5.05094 5.07388 5.13282 5.21218 5.30088 5.38670 5.43863 5.59274 5.68252 5.72507 5.91604 6.06982 6.11310 6.15297 6.59728 6.71079 7.12817 7.34925 7.57224 8.12478 8.68889 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029758 B = 0.002020 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.702123 B =13855.638723 C =14120.436266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.177 4.177 3 C 0.084 3.916 4 O -0.398 6.398 5 C 0.047 3.953 6 C 0.508 3.492 7 O -0.581 6.581 8 N -0.691 5.691 9 C 0.170 3.830 10 H 0.069 0.931 11 C -0.128 4.128 12 C -0.098 4.098 13 C 0.036 3.964 14 N -0.486 5.486 15 C 0.046 3.954 16 C 0.409 3.591 17 O -0.622 6.622 18 N -0.570 5.570 19 C -0.332 4.332 20 H 0.076 0.924 21 C -0.010 4.010 22 N -0.917 5.917 23 Si 0.987 3.013 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.276 1.276 27 C 0.063 3.937 28 H 0.053 0.947 29 C -0.139 4.139 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.104 0.896 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.420 0.580 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.036 0.964 44 H 0.112 0.888 45 H 0.116 0.884 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.056 0.944 49 H 0.047 0.953 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.697 -8.919 -14.829 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.008 3.992 4 O -0.317 6.317 5 C -0.032 4.032 6 C 0.295 3.705 7 O -0.460 6.460 8 N -0.345 5.345 9 C 0.065 3.935 10 H 0.087 0.913 11 C -0.167 4.167 12 C -0.135 4.135 13 C -0.092 4.092 14 N -0.209 5.209 15 C -0.086 4.086 16 C 0.196 3.804 17 O -0.510 6.510 18 N -0.207 5.207 19 C -0.462 4.462 20 H 0.094 0.906 21 C -0.210 4.210 22 N -0.558 5.558 23 Si 0.811 3.189 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.201 1.201 27 C -0.046 4.046 28 H 0.071 0.929 29 C -0.196 4.196 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.258 0.742 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.054 0.946 44 H 0.130 0.870 45 H 0.134 0.866 46 H 0.230 0.770 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.066 0.934 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -17.628 -10.285 -14.360 24.955 hybrid contribution 1.597 0.927 1.183 2.193 sum -16.031 -9.357 -13.177 22.764 Atomic orbital electron populations 1.24055 0.95034 1.03472 0.97924 1.22804 0.96334 0.98153 1.02246 1.21784 0.88354 0.96512 0.92509 1.87999 1.45501 1.36469 1.61733 1.22328 0.92636 0.89286 0.98937 1.20904 0.82720 0.83318 0.83578 1.90708 1.74177 1.29112 1.52019 1.45677 1.29960 1.17608 1.41225 1.20724 0.87181 0.95039 0.90577 0.91338 1.21886 0.97078 0.98804 0.98937 1.21428 1.01274 0.93419 0.97405 1.22319 0.92212 0.96231 0.98409 1.62527 1.29695 1.00750 1.27945 1.22237 0.96338 0.92842 0.97148 1.22191 0.87829 0.83733 0.86627 1.90428 1.65499 1.30758 1.64290 1.42118 1.32180 1.07927 1.38476 1.19606 1.12742 0.93841 1.19976 0.90628 1.25950 1.00897 0.94155 1.00028 1.69654 1.43412 0.97861 1.44838 0.85014 0.78101 0.77807 0.77942 1.19775 1.19594 1.20123 1.21975 0.97348 0.92253 0.93060 0.92938 1.21821 0.96982 0.99949 1.00852 0.86948 0.86876 0.87748 0.90822 0.90511 0.87232 0.87253 0.74184 0.92838 0.92029 0.89919 0.91126 0.90533 0.94585 0.86952 0.86603 0.77015 0.91347 0.92447 0.93389 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 14.31 67.77 0.97 -0.84 16 2 C -0.18 -2.60 9.89 25.64 0.25 -2.35 16 3 C 0.08 1.14 6.35 71.24 0.45 1.59 16 4 O -0.40 -8.54 9.86 -129.94 -1.28 -9.82 16 5 C 0.05 0.72 6.42 71.24 0.46 1.18 16 6 C 0.51 12.06 7.87 87.66 0.69 12.75 16 7 O -0.58 -20.16 16.16 15.98 0.26 -19.90 16 8 N -0.69 -14.22 3.80 -442.28 -1.68 -15.90 16 9 C 0.17 4.59 2.26 45.04 0.10 4.69 16 10 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 11 C -0.13 -3.54 5.67 30.67 0.17 -3.37 16 12 C -0.10 -2.35 5.93 30.64 0.18 -2.17 16 13 C 0.04 1.06 4.98 86.33 0.43 1.49 16 14 N -0.49 -13.14 4.17 -875.63 -3.65 -16.79 16 15 C 0.05 1.38 5.47 85.56 0.47 1.84 16 16 C 0.41 17.70 7.18 87.66 0.63 18.33 16 17 O -0.62 -31.19 11.22 -3.06 -0.03 -31.22 16 18 N -0.57 -27.67 5.29 -306.99 -1.62 -29.29 16 19 C -0.33 -18.25 9.68 84.04 0.81 -17.44 16 20 H 0.08 4.48 7.16 -2.91 -0.02 4.46 16 21 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 22 N -0.92 -48.23 13.05 21.66 0.28 -47.95 16 23 Si 0.99 42.42 29.55 68.60 2.03 44.45 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 27 C 0.06 1.83 1.77 44.94 0.08 1.91 16 28 H 0.05 2.06 5.76 -2.39 -0.01 2.05 16 29 C -0.14 -3.47 8.28 71.98 0.60 -2.87 16 30 H 0.11 0.86 7.90 -2.91 -0.02 0.84 16 31 H 0.11 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.10 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.07 0.71 7.86 -2.39 -0.02 0.69 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.42 6.55 7.94 -92.71 -0.74 5.81 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.08 1.67 7.73 -2.39 -0.02 1.65 16 41 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.08 2.07 8.12 -2.38 -0.02 2.05 16 43 H 0.04 1.40 5.61 -2.38 -0.01 1.39 16 44 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 45 H 0.12 3.05 6.04 -2.38 -0.01 3.03 16 46 H 0.40 18.29 7.90 -92.71 -0.73 17.56 16 47 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 48 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.32 6.59 -2.39 -0.02 1.30 16 50 H 0.08 1.66 7.61 -2.38 -0.02 1.64 16 Total: -1.00 -72.48 399.34 0.55 -71.93 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -0.51 Total: 39.79 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.76 Total: 14.70 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -6.67 Total: -109.93 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -1.06 Total: -60.94 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -72.48 0.55 -71.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714562.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.104 kcal (2) G-P(sol) polarization free energy of solvation -72.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds