Wall clock time and date at job start Tue Mar 31 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.46797 * 2 1 4 4 O 1.42901 * 109.46973 * 240.00294 * 2 1 3 5 5 C 1.52997 * 109.47108 * 120.00320 * 2 1 3 6 6 C 1.52998 * 109.46904 * 184.54372 * 5 2 1 7 7 H 1.09001 * 109.53595 * 176.63354 * 6 5 2 8 8 C 1.53098 * 109.50907 * 56.52762 * 6 5 2 9 9 O 1.43014 * 109.25551 * 183.21557 * 8 6 5 10 10 C 1.43013 * 113.73873 * 58.66906 * 9 8 6 11 11 C 1.53093 * 109.26067 * 301.32612 * 10 9 8 12 12 N 1.47012 * 109.50380 * 296.73919 * 6 5 2 13 13 C 1.46899 * 111.00481 * 302.32966 * 12 6 5 14 14 C 1.50696 * 109.47288 * 170.09143 * 13 12 6 15 15 O 1.21283 * 119.99759 * 354.38972 * 14 13 12 16 16 N 1.34771 * 120.00280 * 174.39477 * 14 13 12 17 17 C 1.46495 * 120.00316 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47625 * 270.00093 * 17 16 14 19 19 H 1.08004 * 119.99525 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00313 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00204 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99861 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46913 * 90.00411 * 22 20 18 24 24 H 1.48503 * 109.47417 * 210.00147 * 22 20 18 25 25 H 1.48503 * 109.47377 * 330.00363 * 22 20 18 26 26 C 1.46495 * 119.99937 * 359.97438 * 16 14 13 27 27 C 1.53002 * 109.47127 * 270.00095 * 26 16 14 28 28 C 1.47201 * 109.47304 * 180.02562 * 27 26 16 29 29 N 8.12252 * 103.19319 * 162.50758 * 2 1 3 30 30 H 1.09000 * 109.47072 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.47079 * 59.99941 * 1 2 3 32 32 H 1.08995 * 109.46853 * 179.97438 * 1 2 3 33 33 H 0.96702 * 113.99980 * 299.99946 * 4 2 1 34 34 H 1.08996 * 109.47079 * 64.54108 * 5 2 1 35 35 H 1.09001 * 109.46685 * 304.54480 * 5 2 1 36 36 H 1.08996 * 109.50727 * 63.27940 * 8 6 5 37 37 H 1.09005 * 109.53792 * 303.17030 * 8 6 5 38 38 H 1.09005 * 109.50298 * 181.38819 * 10 9 8 39 39 H 1.09002 * 109.50736 * 61.26718 * 10 9 8 40 40 H 1.09001 * 109.50689 * 296.91433 * 11 10 9 41 41 H 1.08996 * 109.54441 * 176.80591 * 11 10 9 42 42 H 1.09003 * 109.46759 * 50.08826 * 13 12 6 43 43 H 1.09001 * 109.47313 * 290.08954 * 13 12 6 44 44 H 1.09005 * 109.47517 * 150.00173 * 17 16 14 45 45 H 1.08999 * 109.47284 * 30.00264 * 17 16 14 46 46 H 0.96995 * 120.00139 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.47664 * 29.99844 * 26 16 14 48 48 H 1.09004 * 109.47537 * 149.99853 * 26 16 14 49 49 H 1.09001 * 109.47106 * 299.99611 * 27 26 16 50 50 H 1.08993 * 109.47313 * 59.99932 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5658 -0.6231 1.3076 7 1 3.9258 -1.0845 2.2272 8 6 3.9849 0.8491 1.2762 9 8 5.4125 0.9327 1.2552 10 6 6.0119 0.2674 0.1402 11 6 5.6133 -1.2106 0.1601 12 7 4.1470 -1.3177 0.1496 13 6 3.7221 -2.7233 0.1109 14 6 4.1308 -3.3357 -1.2039 15 8 4.6265 -2.6431 -2.0674 16 7 3.9454 -4.6529 -1.4204 17 6 4.3423 -5.2482 -2.6988 18 6 3.1862 -5.1840 -3.6633 19 1 2.2495 -4.7434 -3.3550 20 6 3.3244 -5.6867 -4.9397 21 7 4.4651 -6.2228 -5.3154 22 14 1.8911 -5.6078 -6.1349 23 1 1.9518 -4.3348 -6.8972 24 1 1.9685 -6.7530 -7.0771 25 1 0.6134 -5.6727 -5.3808 26 6 3.3471 -5.4896 -0.3773 27 6 4.4508 -6.0532 0.5200 28 6 3.8496 -6.8944 1.5678 29 7 3.3839 -7.5424 2.3770 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7210 -1.5952 -1.2330 34 1 1.7447 -1.7697 1.2094 35 1 1.6117 -0.2566 2.1373 36 1 3.6036 1.3551 2.1631 37 1 3.5793 1.3246 0.3831 38 1 7.0966 0.3528 0.2055 39 1 5.6653 0.7254 -0.7862 40 1 6.0062 -1.6814 1.0613 41 1 6.0210 -1.7101 -0.7187 42 1 2.6385 -2.7783 0.2162 43 1 4.1946 -3.2684 0.9281 44 1 4.6275 -6.2886 -2.5423 45 1 5.1886 -4.6973 -3.1090 46 1 4.5625 -6.5761 -6.2134 47 1 2.6628 -4.8891 0.2222 48 1 2.7998 -6.3111 -0.8397 49 1 5.1350 -6.6538 -0.0794 50 1 4.9980 -5.2319 0.9825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157213129.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:01 Heat of formation + Delta-G solvation = -83.152572 kcal Electronic energy + Delta-G solvation = -31876.271311 eV Core-core repulsion = 27711.588854 eV Total energy + Delta-G solvation = -4164.682457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.37165 -38.90155 -37.46629 -36.89225 -35.53624 -35.01594 -32.95716 -32.73811 -30.85643 -30.51668 -29.48001 -27.39692 -26.72662 -24.91897 -24.01285 -23.15059 -22.41324 -21.86017 -19.70069 -18.54748 -17.68262 -17.05453 -16.55316 -16.40192 -16.25879 -15.95596 -15.62514 -15.40512 -15.17392 -14.77952 -14.73422 -14.45676 -14.28391 -14.03582 -13.80045 -13.46663 -13.38059 -12.94445 -12.73514 -12.58486 -12.48036 -12.35879 -12.21134 -11.99947 -11.86594 -11.78771 -11.53305 -11.42623 -11.28010 -11.08571 -11.02073 -10.85564 -10.63730 -10.58746 -10.44922 -10.18325 -9.74382 -9.69406 -9.56118 -8.91276 -8.46539 -8.10810 -7.81117 -6.08353 -4.12636 2.67845 2.75788 3.30212 3.30919 3.36956 3.38908 3.43829 3.79738 3.87762 4.22126 4.39693 4.42780 4.55748 4.74595 4.88161 4.91511 4.96073 5.05943 5.06969 5.15015 5.16193 5.23665 5.25841 5.29113 5.33599 5.35322 5.41202 5.44928 5.52455 5.62914 5.64490 5.72214 5.77413 5.79200 5.98367 6.00596 6.02529 6.05860 6.14931 6.82701 7.01802 7.06486 7.17258 7.36452 7.44314 7.52464 7.87853 7.95387 8.17724 8.27866 8.86406 9.03721 9.53115 10.99784 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008692 B = 0.004152 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.460879 B = 6742.566605 C = 7844.833572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.104 3.896 3 H 0.095 0.905 4 O -0.526 6.526 5 C -0.151 4.151 6 C 0.054 3.946 7 H 0.045 0.955 8 C 0.068 3.932 9 O -0.390 6.390 10 C 0.067 3.933 11 C 0.017 3.983 12 N -0.488 5.488 13 C 0.032 3.968 14 C 0.507 3.493 15 O -0.503 6.503 16 N -0.601 5.601 17 C 0.247 3.753 18 C -0.526 4.526 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.894 5.894 22 Si 0.896 3.104 23 H -0.279 1.279 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.119 3.881 27 C -0.051 4.051 28 C 0.216 3.784 29 N -0.445 5.445 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.366 0.634 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.050 0.950 44 H 0.033 0.967 45 H 0.046 0.954 46 H 0.263 0.737 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.118 0.882 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.297 10.183 15.210 18.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.044 3.956 3 H 0.113 0.887 4 O -0.329 6.329 5 C -0.189 4.189 6 C -0.055 4.055 7 H 0.063 0.937 8 C -0.009 4.009 9 O -0.309 6.309 10 C -0.010 4.010 11 C -0.111 4.111 12 N -0.213 5.213 13 C -0.099 4.099 14 C 0.293 3.707 15 O -0.377 6.377 16 N -0.334 5.334 17 C 0.128 3.872 18 C -0.564 4.564 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.007 4.007 27 C -0.092 4.092 28 C -0.102 4.102 29 N -0.123 5.123 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.212 0.788 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.123 0.877 42 H 0.115 0.885 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.089 0.911 48 H 0.113 0.887 49 H 0.136 0.864 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.406 10.421 15.358 18.715 hybrid contribution -0.855 -1.073 -0.225 1.390 sum -3.260 9.349 15.133 18.084 Atomic orbital electron populations 1.22583 0.97351 1.02358 1.02331 1.21807 0.91602 0.96956 0.85211 0.88716 1.86823 1.76426 1.28124 1.41553 1.22462 0.94553 1.02052 0.99854 1.22229 0.94836 0.96284 0.92151 0.93745 1.22754 0.81523 0.94335 1.02303 1.87931 1.19508 1.75867 1.47584 1.22650 0.97706 0.91108 0.89531 1.22907 0.88049 0.97975 1.02141 1.61836 1.08121 1.11619 1.39767 1.22188 1.01897 0.89414 0.96392 1.20112 0.80048 0.82090 0.88487 1.90698 1.42157 1.59656 1.45158 1.48245 1.61478 1.07037 1.16685 1.19309 0.96709 0.93303 0.77839 1.21393 0.98697 1.39205 0.97142 0.92394 1.24900 0.95925 0.95107 0.97987 1.69913 1.24196 1.39836 1.19376 0.86537 0.82474 0.77657 0.80960 1.20530 1.21284 1.19987 1.21260 0.93296 0.96629 0.89561 1.19921 0.99795 0.97554 0.91973 1.29147 0.93505 0.93634 0.93885 1.81233 1.09270 1.10343 1.11416 0.92179 0.91822 0.92528 0.78766 0.91050 0.90581 0.89097 0.91552 0.88782 0.91733 0.95118 0.87652 0.88483 0.93205 0.94940 0.93637 0.92717 0.91087 0.88749 0.86427 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.63 9.54 37.16 0.35 -1.27 16 2 C 0.10 1.04 3.29 -26.73 -0.09 0.95 16 3 H 0.10 0.96 6.05 -51.93 -0.31 0.64 16 4 O -0.53 -7.37 11.20 -35.23 -0.39 -7.77 16 5 C -0.15 -1.29 4.50 -26.73 -0.12 -1.41 16 6 C 0.05 0.56 2.28 -67.60 -0.15 0.41 16 7 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 8 C 0.07 0.71 5.95 37.21 0.22 0.94 16 9 O -0.39 -4.91 10.83 -35.23 -0.38 -5.29 16 10 C 0.07 0.82 7.01 37.21 0.26 1.09 16 11 C 0.02 0.23 5.30 -3.71 -0.02 0.21 16 12 N -0.49 -6.26 2.70 -227.78 -0.61 -6.87 16 13 C 0.03 0.40 2.83 -4.98 -0.01 0.38 16 14 C 0.51 8.66 7.26 -10.99 -0.08 8.58 16 15 O -0.50 -11.00 14.21 5.56 0.08 -10.92 16 16 N -0.60 -10.27 2.46 -175.06 -0.43 -10.70 16 17 C 0.25 5.63 5.16 -5.20 -0.03 5.61 16 18 C -0.53 -13.61 9.39 -34.44 -0.32 -13.94 16 19 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.22 13.29 55.43 0.74 -24.48 16 22 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 C 0.12 1.48 5.09 -4.04 -0.02 1.46 16 27 C -0.05 -0.51 5.97 -29.52 -0.18 -0.68 16 28 C 0.22 2.52 15.44 -20.74 -0.32 2.20 16 29 N -0.45 -6.37 18.54 42.17 0.78 -5.59 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.37 4.89 7.70 45.56 0.35 5.24 16 34 H 0.07 0.59 5.99 -51.93 -0.31 0.28 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.75 6.10 -51.93 -0.32 0.43 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.11 1.64 6.07 -51.93 -0.32 1.33 16 42 H 0.10 1.04 4.29 -51.93 -0.22 0.82 16 43 H 0.05 0.52 6.86 -51.93 -0.36 0.17 16 44 H 0.03 0.74 8.07 -51.93 -0.42 0.32 16 45 H 0.05 1.20 7.42 -51.93 -0.39 0.81 16 46 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 47 H 0.07 0.71 6.60 -51.93 -0.34 0.37 16 48 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 49 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.10 0.86 7.13 -51.93 -0.37 0.49 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -32.89 396.43 -7.07 -39.96 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.19 Total: 3.57 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.60 Total: 6.11 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: 0.47 Total: -47.64 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.70 Total: -23.98 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.89 -7.07 -39.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157213129.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.196 kcal (2) G-P(sol) polarization free energy of solvation -32.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds