Wall clock time and date at job start Tue Mar 31 2020 22:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08993 * 109.46797 * 2 1 4 4 O 1.42901 * 109.46973 * 240.00294 * 2 1 3 5 5 C 1.52997 * 109.47108 * 120.00320 * 2 1 3 6 6 C 1.52998 * 109.46904 * 184.54372 * 5 2 1 7 7 H 1.09001 * 109.53595 * 176.63354 * 6 5 2 8 8 C 1.53098 * 109.50907 * 56.52762 * 6 5 2 9 9 O 1.43014 * 109.25551 * 183.21557 * 8 6 5 10 10 C 1.43013 * 113.73873 * 58.66906 * 9 8 6 11 11 C 1.53093 * 109.26067 * 301.32612 * 10 9 8 12 12 N 1.47012 * 109.50380 * 296.73919 * 6 5 2 13 13 C 1.46899 * 111.00481 * 302.32966 * 12 6 5 14 14 C 1.50696 * 109.47288 * 170.09143 * 13 12 6 15 15 O 1.21283 * 119.99759 * 354.38972 * 14 13 12 16 16 N 1.34771 * 120.00280 * 174.39477 * 14 13 12 17 17 C 1.46495 * 120.00316 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47625 * 270.00093 * 17 16 14 19 19 H 1.08004 * 119.99525 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00313 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00204 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99861 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46913 * 90.00411 * 22 20 18 24 24 H 1.48503 * 109.47417 * 210.00147 * 22 20 18 25 25 H 1.48503 * 109.47377 * 330.00363 * 22 20 18 26 26 C 1.46495 * 119.99937 * 359.97438 * 16 14 13 27 27 C 1.53002 * 109.47127 * 270.00095 * 26 16 14 28 28 C 1.47201 * 109.47304 * 180.02562 * 27 26 16 29 29 N 8.12252 * 103.19319 * 162.50758 * 2 1 3 30 30 H 1.09000 * 109.47072 * 300.00227 * 1 2 3 31 31 H 1.09001 * 109.47079 * 59.99941 * 1 2 3 32 32 H 1.08995 * 109.46853 * 179.97438 * 1 2 3 33 33 H 0.96702 * 113.99980 * 299.99946 * 4 2 1 34 34 H 1.08996 * 109.47079 * 64.54108 * 5 2 1 35 35 H 1.09001 * 109.46685 * 304.54480 * 5 2 1 36 36 H 1.08996 * 109.50727 * 63.27940 * 8 6 5 37 37 H 1.09005 * 109.53792 * 303.17030 * 8 6 5 38 38 H 1.09005 * 109.50298 * 181.38819 * 10 9 8 39 39 H 1.09002 * 109.50736 * 61.26718 * 10 9 8 40 40 H 1.09001 * 109.50689 * 296.91433 * 11 10 9 41 41 H 1.08996 * 109.54441 * 176.80591 * 11 10 9 42 42 H 1.09003 * 109.46759 * 50.08826 * 13 12 6 43 43 H 1.09001 * 109.47313 * 290.08954 * 13 12 6 44 44 H 1.09005 * 109.47517 * 150.00173 * 17 16 14 45 45 H 1.08999 * 109.47284 * 30.00264 * 17 16 14 46 46 H 0.96995 * 120.00139 * 180.02562 * 21 20 18 47 47 H 1.09007 * 109.47664 * 29.99844 * 26 16 14 48 48 H 1.09004 * 109.47537 * 149.99853 * 26 16 14 49 49 H 1.09001 * 109.47106 * 299.99611 * 27 26 16 50 50 H 1.08993 * 109.47313 * 59.99932 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0401 -0.7213 1.2492 6 6 3.5658 -0.6231 1.3076 7 1 3.9258 -1.0845 2.2272 8 6 3.9849 0.8491 1.2762 9 8 5.4125 0.9327 1.2552 10 6 6.0119 0.2674 0.1402 11 6 5.6133 -1.2106 0.1601 12 7 4.1470 -1.3177 0.1496 13 6 3.7221 -2.7233 0.1109 14 6 4.1308 -3.3357 -1.2039 15 8 4.6265 -2.6431 -2.0674 16 7 3.9454 -4.6529 -1.4204 17 6 4.3423 -5.2482 -2.6988 18 6 3.1862 -5.1840 -3.6633 19 1 2.2495 -4.7434 -3.3550 20 6 3.3244 -5.6867 -4.9397 21 7 4.4651 -6.2228 -5.3154 22 14 1.8911 -5.6078 -6.1349 23 1 1.9518 -4.3348 -6.8972 24 1 1.9685 -6.7530 -7.0771 25 1 0.6134 -5.6727 -5.3808 26 6 3.3471 -5.4896 -0.3773 27 6 4.4508 -6.0532 0.5200 28 6 3.8496 -6.8944 1.5678 29 7 3.3839 -7.5424 2.3770 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7210 -1.5952 -1.2330 34 1 1.7447 -1.7697 1.2094 35 1 1.6117 -0.2566 2.1373 36 1 3.6036 1.3551 2.1631 37 1 3.5793 1.3246 0.3831 38 1 7.0966 0.3528 0.2055 39 1 5.6653 0.7254 -0.7862 40 1 6.0062 -1.6814 1.0613 41 1 6.0210 -1.7101 -0.7187 42 1 2.6385 -2.7783 0.2162 43 1 4.1946 -3.2684 0.9281 44 1 4.6275 -6.2886 -2.5423 45 1 5.1886 -4.6973 -3.1090 46 1 4.5625 -6.5761 -6.2134 47 1 2.6628 -4.8891 0.2222 48 1 2.7998 -6.3111 -0.8397 49 1 5.1350 -6.6538 -0.0794 50 1 4.9980 -5.2319 0.9825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157213129.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:01 Heat of formation + Delta-G solvation = -107.038499 kcal Electronic energy + Delta-G solvation = -31877.307082 eV Core-core repulsion = 27711.588854 eV Total energy + Delta-G solvation = -4165.718229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38908 -40.12020 -38.35560 -37.95830 -36.72203 -36.18266 -34.80022 -33.70485 -32.11793 -31.36394 -30.62264 -28.88547 -27.62181 -26.11760 -25.25991 -24.11561 -23.85904 -22.71518 -20.60609 -19.83376 -18.79661 -18.30271 -18.08492 -17.49058 -17.32592 -17.03729 -16.69009 -16.48890 -16.15953 -15.99804 -15.82596 -15.63124 -15.41395 -15.19311 -14.76220 -14.53398 -14.45931 -14.16986 -13.98767 -13.57115 -13.54434 -13.50850 -13.33906 -13.15481 -12.92954 -12.90333 -12.66885 -12.59087 -12.50588 -12.44568 -12.26399 -12.12082 -11.99156 -11.84637 -11.59486 -11.46861 -11.33931 -10.62085 -10.54705 -10.49440 -10.27131 -9.37540 -9.00626 -8.13267 -6.24363 1.41641 1.44986 1.52296 1.69999 1.83116 2.02683 2.25779 2.46958 2.84715 2.99687 3.17201 3.20394 3.61164 3.78525 3.82862 3.94127 4.05410 4.12862 4.14650 4.21866 4.26172 4.30131 4.31495 4.40656 4.46911 4.52726 4.60141 4.65014 4.78961 4.81767 4.85597 4.89764 4.96268 4.97849 5.03388 5.06688 5.14340 5.17777 5.31703 5.40716 5.42756 5.68048 5.93323 6.04053 6.14172 6.19321 6.27311 6.60119 6.84313 6.92017 7.04445 7.41897 7.69335 8.93233 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008692 B = 0.004152 C = 0.003568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.460879 B = 6742.566605 C = 7844.833572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.090 0.910 4 O -0.555 6.555 5 C -0.143 4.143 6 C 0.056 3.944 7 H 0.057 0.943 8 C 0.063 3.937 9 O -0.399 6.399 10 C 0.071 3.929 11 C 0.021 3.979 12 N -0.508 5.508 13 C 0.045 3.955 14 C 0.505 3.495 15 O -0.560 6.560 16 N -0.601 5.601 17 C 0.263 3.737 18 C -0.531 4.531 19 H 0.056 0.944 20 C 0.011 3.989 21 N -0.928 5.928 22 Si 0.954 3.046 23 H -0.286 1.286 24 H -0.282 1.282 25 H -0.262 1.262 26 C 0.115 3.885 27 C -0.039 4.039 28 C 0.245 3.755 29 N -0.488 5.488 30 H 0.081 0.919 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.364 0.636 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.053 0.947 38 H 0.109 0.891 39 H 0.042 0.958 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.030 0.970 45 H 0.001 0.999 46 H 0.263 0.737 47 H 0.105 0.895 48 H 0.083 0.917 49 H 0.119 0.881 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.965 10.588 17.983 21.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.040 3.960 3 H 0.108 0.892 4 O -0.360 6.360 5 C -0.181 4.181 6 C -0.052 4.052 7 H 0.074 0.926 8 C -0.014 4.014 9 O -0.318 6.318 10 C -0.006 4.006 11 C -0.107 4.107 12 N -0.234 5.234 13 C -0.085 4.085 14 C 0.293 3.707 15 O -0.437 6.437 16 N -0.333 5.333 17 C 0.142 3.858 18 C -0.570 4.570 19 H 0.074 0.926 20 C -0.188 4.188 21 N -0.568 5.568 22 Si 0.780 3.220 23 H -0.213 1.213 24 H -0.207 1.207 25 H -0.186 1.186 26 C -0.010 4.010 27 C -0.080 4.080 28 C -0.072 4.072 29 N -0.166 5.166 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.211 0.789 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.137 0.863 37 H 0.071 0.929 38 H 0.127 0.873 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.092 0.908 42 H 0.138 0.862 43 H 0.099 0.901 44 H 0.048 0.952 45 H 0.019 0.981 46 H 0.072 0.928 47 H 0.123 0.877 48 H 0.102 0.898 49 H 0.137 0.863 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.107 10.817 18.188 21.556 hybrid contribution -0.321 -1.123 -1.087 1.595 sum -4.427 9.695 17.100 20.150 Atomic orbital electron populations 1.22510 0.96148 1.02656 1.02697 1.21960 0.92532 0.96613 0.84865 0.89184 1.86814 1.77145 1.28228 1.43789 1.22429 0.93080 1.02625 0.99943 1.22301 0.95897 0.95619 0.91366 0.92552 1.22954 0.80469 0.94927 1.03045 1.87918 1.20779 1.75886 1.47211 1.22586 0.98606 0.90630 0.88777 1.22764 0.88660 0.98058 1.01211 1.61750 1.07848 1.12058 1.41743 1.22110 1.03314 0.89367 0.93739 1.20982 0.78548 0.81432 0.89707 1.90682 1.44568 1.60937 1.47509 1.48085 1.61612 1.07808 1.15843 1.18724 0.94332 0.92607 0.80141 1.21758 0.99317 1.38054 0.97858 0.92581 1.25682 0.98138 0.95153 0.99832 1.70022 1.25971 1.41111 1.19745 0.85620 0.80219 0.77202 0.78981 1.21272 1.20749 1.18585 1.21476 0.94291 0.96341 0.88863 1.19844 0.98851 0.98096 0.91194 1.29166 0.92305 0.92639 0.93091 1.81278 1.10571 1.11736 1.13027 0.90019 0.93267 0.92225 0.78911 0.90170 0.87695 0.86289 0.92876 0.87297 0.93920 0.93714 0.90793 0.86202 0.90140 0.95180 0.98066 0.92791 0.87680 0.89818 0.86329 0.85120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 9.54 71.99 0.69 -2.03 16 2 C 0.10 1.79 3.29 30.60 0.10 1.89 16 3 H 0.09 1.69 6.05 -2.39 -0.01 1.68 16 4 O -0.56 -15.29 11.20 -148.98 -1.67 -16.96 16 5 C -0.14 -1.89 4.50 30.59 0.14 -1.75 16 6 C 0.06 0.99 2.28 44.93 0.10 1.09 16 7 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 8 C 0.06 1.17 5.95 72.01 0.43 1.60 16 9 O -0.40 -9.41 10.83 -148.98 -1.61 -11.02 16 10 C 0.07 1.74 7.01 72.01 0.50 2.24 16 11 C 0.02 0.54 5.30 86.31 0.46 1.00 16 12 N -0.51 -12.19 2.70 -874.55 -2.36 -14.55 16 13 C 0.05 0.99 2.83 85.56 0.24 1.24 16 14 C 0.51 17.05 7.26 87.66 0.64 17.69 16 15 O -0.56 -25.44 14.21 -3.04 -0.04 -25.48 16 16 N -0.60 -20.22 2.46 -826.16 -2.03 -22.25 16 17 C 0.26 12.34 5.16 85.63 0.44 12.79 16 18 C -0.53 -27.97 9.39 25.60 0.24 -27.73 16 19 H 0.06 2.91 7.81 -2.91 -0.02 2.88 16 20 C 0.01 0.59 5.46 84.65 0.46 1.05 16 21 N -0.93 -53.70 13.29 21.45 0.28 -53.42 16 22 Si 0.95 43.53 29.54 68.60 2.03 45.55 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 26 C 0.12 2.59 5.09 86.38 0.44 3.03 16 27 C -0.04 -0.66 5.97 28.79 0.17 -0.49 16 28 C 0.25 5.05 15.44 89.44 1.38 6.44 16 29 N -0.49 -12.97 18.54 20.01 0.37 -12.59 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.36 9.49 7.70 -74.06 -0.57 8.92 16 34 H 0.08 0.95 5.99 -2.39 -0.01 0.94 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.05 1.14 6.10 -2.38 -0.01 1.13 16 38 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 2.39 6.07 -2.39 -0.01 2.38 16 42 H 0.12 2.12 4.29 -2.39 -0.01 2.11 16 43 H 0.08 1.31 6.86 -2.39 -0.02 1.30 16 44 H 0.03 1.41 8.07 -2.38 -0.02 1.39 16 45 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 46 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 47 H 0.11 1.68 6.60 -2.38 -0.02 1.66 16 48 H 0.08 2.11 8.07 -2.38 -0.02 2.09 16 49 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.13 1.62 7.13 -2.39 -0.02 1.60 16 Total: -1.00 -75.34 396.43 1.79 -73.55 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.39 Total: 19.12 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.43 Total: 18.05 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -3.73 Total: -102.81 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -3.32 Total: -53.46 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.55 kcal Total: -75.34 1.79 -73.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157213129.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.493 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds