Wall clock time and date at job start Tue Mar 31 2020 22:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47280 * 2 1 4 4 O 1.42904 * 109.46857 * 240.00059 * 2 1 3 5 5 C 1.52998 * 109.47221 * 120.00429 * 2 1 3 6 6 C 1.52998 * 109.47198 * 183.11015 * 5 2 1 7 7 H 1.08996 * 109.50939 * 303.26563 * 6 5 2 8 8 C 1.53092 * 109.50564 * 63.39579 * 6 5 2 9 9 O 1.43092 * 109.28676 * 176.78680 * 8 6 5 10 10 C 1.43018 * 113.68691 * 301.35654 * 9 8 6 11 11 C 1.53102 * 109.29307 * 58.64269 * 10 9 8 12 12 N 1.47008 * 109.25784 * 303.13482 * 11 10 9 13 13 C 1.46903 * 110.99768 * 182.38937 * 12 11 10 14 14 C 1.50700 * 109.47080 * 66.45586 * 13 12 11 15 15 O 1.21280 * 119.99974 * 4.75875 * 14 13 12 16 16 N 1.34778 * 120.00092 * 184.76358 * 14 13 12 17 17 C 1.46498 * 120.00256 * 185.19539 * 16 14 13 18 18 C 1.50698 * 109.47176 * 89.99815 * 17 16 14 19 19 H 1.08000 * 119.99908 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99955 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99888 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99705 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47556 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46956 * 120.00289 * 22 20 18 25 25 H 1.48494 * 109.47436 * 239.99876 * 22 20 18 26 26 C 1.46507 * 119.99805 * 5.19069 * 16 14 13 27 27 C 1.53000 * 109.46720 * 85.68105 * 26 16 14 28 28 C 1.47200 * 109.46905 * 185.00849 * 27 26 16 29 29 N 7.61117 * 105.96368 * 181.84843 * 2 1 3 30 30 H 1.08998 * 109.46869 * 299.99565 * 1 2 3 31 31 H 1.09003 * 109.46976 * 59.99669 * 1 2 3 32 32 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 33 33 H 0.96696 * 114.00711 * 304.97869 * 4 2 1 34 34 H 1.09007 * 109.47094 * 63.10885 * 5 2 1 35 35 H 1.09001 * 109.47228 * 303.11418 * 5 2 1 36 36 H 1.09009 * 109.50684 * 296.71620 * 8 6 5 37 37 H 1.08997 * 109.51156 * 56.80081 * 8 6 5 38 38 H 1.08998 * 109.50985 * 298.68919 * 10 9 8 39 39 H 1.09003 * 109.51241 * 178.60033 * 10 9 8 40 40 H 1.09005 * 109.50254 * 63.07068 * 11 10 9 41 41 H 1.08997 * 109.50665 * 183.19359 * 11 10 9 42 42 H 1.08995 * 109.47382 * 186.45281 * 13 12 11 43 43 H 1.09004 * 109.47437 * 306.45288 * 13 12 11 44 44 H 1.09000 * 109.47133 * 209.99985 * 17 16 14 45 45 H 1.09002 * 109.46794 * 329.99876 * 17 16 14 46 46 H 0.97001 * 119.99495 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.47005 * 205.67213 * 26 16 14 48 48 H 1.08993 * 109.46914 * 325.67886 * 26 16 14 49 49 H 1.09007 * 109.46916 * 305.00044 * 27 26 16 50 50 H 1.08999 * 109.47975 * 65.00226 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5680 -0.6539 1.2889 7 1 3.9752 -1.0823 0.3731 8 6 4.0122 0.8059 1.4130 9 8 5.4377 0.8582 1.5252 10 6 5.9531 0.1308 2.6435 11 6 5.5285 -1.3360 2.5320 12 7 4.0628 -1.4114 2.4476 13 6 3.6096 -2.8078 2.3962 14 6 3.9200 -3.4852 3.7061 15 8 4.3858 -2.8447 4.6246 16 7 3.6801 -4.8029 3.8568 17 6 3.8740 -5.4381 5.1626 18 6 2.5904 -5.3713 5.9493 19 1 1.7176 -4.9022 5.5197 20 6 2.5306 -5.9082 7.2178 21 7 3.5936 -6.4790 7.7411 22 14 0.9396 -5.8247 8.1932 23 1 -0.1004 -5.1375 7.3861 24 1 0.4850 -7.2007 8.5174 25 1 1.1693 -5.0701 9.4513 26 6 3.2253 -5.6000 2.7147 27 6 4.4367 -6.0770 1.9111 28 6 3.9775 -6.7751 0.6992 29 7 3.6233 -7.3138 -0.2360 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6599 -1.5703 -1.2723 34 1 1.7229 -1.7639 1.2217 35 1 1.6318 -0.2408 2.1383 36 1 3.6965 1.3589 0.5282 37 1 3.5603 1.2498 2.3000 38 1 5.5583 0.5547 3.5667 39 1 7.0412 0.1952 2.6495 40 1 5.9678 -1.7749 1.6361 41 1 5.8712 -1.8819 3.4109 42 1 2.5345 -2.8346 2.2192 43 1 4.1240 -3.3272 1.5876 44 1 4.1594 -6.4805 5.0207 45 1 4.6614 -4.9167 5.7069 46 1 3.5515 -6.8563 8.6337 47 1 2.6651 -6.4631 3.0742 48 1 2.5843 -4.9900 2.0783 49 1 5.0453 -5.2183 1.6271 50 1 5.0312 -6.7583 2.5197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157213445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:06 Heat of formation + Delta-G solvation = -94.835047 kcal Electronic energy + Delta-G solvation = -31118.069080 eV Core-core repulsion = 26952.880033 eV Total energy + Delta-G solvation = -4165.189047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.31875 -38.99249 -37.87428 -36.92862 -35.73262 -35.14340 -33.05415 -32.85621 -30.90764 -30.72153 -29.54846 -27.45614 -26.77553 -24.99397 -24.04336 -23.35506 -22.46034 -21.60635 -20.13139 -18.61511 -17.70843 -16.99465 -16.76007 -16.52362 -16.39725 -16.28154 -15.78316 -15.61239 -15.19218 -14.81114 -14.75911 -14.43353 -14.40371 -14.07136 -13.78628 -13.57870 -13.50579 -13.24983 -12.92373 -12.77408 -12.55049 -12.39477 -12.37857 -12.10191 -11.96702 -11.85304 -11.63596 -11.32690 -11.28555 -11.11188 -11.05767 -11.00451 -10.88315 -10.67258 -10.45250 -10.24723 -10.22361 -9.72993 -9.66983 -9.00959 -8.51094 -8.29915 -7.85809 -6.12490 -4.17235 2.65785 2.74182 3.23704 3.25187 3.33878 3.35175 3.39407 3.77022 3.78677 4.10409 4.19135 4.38564 4.46721 4.63267 4.71229 4.83764 4.88186 4.97312 5.00711 5.07150 5.07685 5.18338 5.21239 5.23675 5.26377 5.34855 5.35446 5.44707 5.48711 5.52973 5.58763 5.69503 5.76145 5.77469 5.83592 5.90520 5.95015 5.99948 6.06521 6.75715 6.94083 6.99984 7.12410 7.32933 7.34659 7.40476 7.50349 7.83913 8.13551 8.22329 8.80972 8.96453 9.48707 10.95602 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008767 B = 0.003528 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.164159 B = 7934.165610 C = 8565.267731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.100 3.900 3 H 0.100 0.900 4 O -0.563 6.563 5 C -0.149 4.149 6 C 0.054 3.946 7 H 0.057 0.943 8 C 0.070 3.930 9 O -0.388 6.388 10 C 0.065 3.935 11 C 0.017 3.983 12 N -0.513 5.513 13 C 0.029 3.971 14 C 0.510 3.490 15 O -0.515 6.515 16 N -0.599 5.599 17 C 0.246 3.754 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.063 3.937 21 N -0.893 5.893 22 Si 0.896 3.104 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.119 3.881 27 C -0.051 4.051 28 C 0.216 3.784 29 N -0.444 5.444 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.374 0.626 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.055 0.945 44 H 0.034 0.966 45 H 0.047 0.953 46 H 0.263 0.737 47 H 0.097 0.903 48 H 0.070 0.930 49 H 0.104 0.896 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.734 10.394 -14.821 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.041 3.959 3 H 0.118 0.882 4 O -0.368 6.368 5 C -0.187 4.187 6 C -0.055 4.055 7 H 0.075 0.925 8 C -0.007 4.007 9 O -0.306 6.306 10 C -0.012 4.012 11 C -0.111 4.111 12 N -0.238 5.238 13 C -0.102 4.102 14 C 0.296 3.704 15 O -0.390 6.390 16 N -0.332 5.332 17 C 0.127 3.873 18 C -0.568 4.568 19 H 0.076 0.924 20 C -0.139 4.139 21 N -0.532 5.532 22 Si 0.724 3.276 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.008 4.008 27 C -0.093 4.093 28 C -0.102 4.102 29 N -0.121 5.121 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.221 0.779 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.053 0.947 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.089 0.911 49 H 0.122 0.878 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.689 10.724 -15.301 18.698 hybrid contribution -1.009 -1.063 0.626 1.593 sum -1.698 9.661 -14.675 17.652 Atomic orbital electron populations 1.22512 0.96148 1.02813 1.02924 1.21980 0.92944 0.96756 0.84242 0.88226 1.86593 1.73201 1.32238 1.44796 1.22427 0.94803 1.02103 0.99361 1.22216 0.95176 0.95672 0.92406 0.92469 1.22729 0.81493 0.94551 1.01927 1.87979 1.20808 1.72924 1.48906 1.22667 0.98926 0.90227 0.89371 1.22913 0.87268 0.98403 1.02499 1.61846 1.10795 1.10773 1.40382 1.22223 1.02419 0.89126 0.96400 1.20141 0.79092 0.82167 0.89025 1.90663 1.42941 1.63328 1.42031 1.48223 1.65975 1.07439 1.11581 1.19348 0.97926 0.92782 0.77266 1.21451 0.97230 1.37787 1.00298 0.92367 1.24910 0.96600 0.95078 0.97336 1.69927 1.28431 1.38292 1.16510 0.86472 0.83372 0.77625 0.80123 1.19824 1.20993 1.20869 1.21269 0.93597 0.97737 0.88149 1.19928 1.00711 1.00272 0.88342 1.29103 0.93400 0.93414 0.94295 1.81215 1.08933 1.09939 1.12004 0.91266 0.91790 0.92141 0.77894 0.90879 0.89615 0.88660 0.92296 0.91912 0.88570 0.94654 0.87574 0.87884 0.92708 0.94792 0.93473 0.92709 0.88507 0.91124 0.87820 0.86441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.23 9.49 37.16 0.35 -0.88 16 2 C 0.10 0.77 3.41 -26.73 -0.09 0.68 16 3 H 0.10 0.75 6.44 -51.93 -0.33 0.42 16 4 O -0.56 -4.90 12.75 -35.23 -0.45 -5.34 16 5 C -0.15 -1.34 4.24 -26.73 -0.11 -1.45 16 6 C 0.05 0.59 1.99 -67.60 -0.13 0.45 16 7 H 0.06 0.67 7.68 -51.93 -0.40 0.27 16 8 C 0.07 0.77 5.93 37.20 0.22 0.99 16 9 O -0.39 -4.98 10.83 -35.23 -0.38 -5.36 16 10 C 0.06 0.79 7.01 37.21 0.26 1.05 16 11 C 0.02 0.22 5.30 -3.71 -0.02 0.20 16 12 N -0.51 -6.83 4.24 -227.78 -0.97 -7.79 16 13 C 0.03 0.38 3.71 -4.97 -0.02 0.36 16 14 C 0.51 8.99 7.24 -10.98 -0.08 8.91 16 15 O -0.51 -11.37 14.15 5.56 0.08 -11.29 16 16 N -0.60 -10.47 2.46 -175.06 -0.43 -10.90 16 17 C 0.25 5.64 5.18 -5.20 -0.03 5.61 16 18 C -0.53 -13.77 9.39 -34.44 -0.32 -14.09 16 19 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 22 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.12 1.50 5.08 -4.04 -0.02 1.48 16 27 C -0.05 -0.51 5.89 -29.52 -0.17 -0.68 16 28 C 0.22 2.49 15.43 -20.76 -0.32 2.16 16 29 N -0.44 -6.26 18.54 42.15 0.78 -5.48 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.37 2.16 9.03 45.56 0.41 2.57 16 34 H 0.07 0.63 5.99 -51.93 -0.31 0.32 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.10 0.89 6.62 -51.92 -0.34 0.55 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.11 1.63 6.06 -51.93 -0.31 1.31 16 42 H 0.10 1.21 5.35 -51.93 -0.28 0.93 16 43 H 0.06 0.59 6.72 -51.93 -0.35 0.24 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.05 1.25 7.36 -51.93 -0.38 0.87 16 46 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 47 H 0.10 1.30 8.04 -51.93 -0.42 0.88 16 48 H 0.07 0.74 6.73 -51.93 -0.35 0.39 16 49 H 0.10 0.89 7.10 -51.92 -0.37 0.52 16 50 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 402.48 15.07 6.07 6.07 Total: -1.00 -33.35 402.48 -7.38 -40.72 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -7.21 Total: 1.46 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -0.59 Total: 6.41 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.12 Total: -48.51 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.75 Total: -22.00 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.35 -7.38 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157213445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.112 kcal (2) G-P(sol) polarization free energy of solvation -33.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds