Wall clock time and date at job start Tue Mar 31 2020 22:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47280 * 2 1 4 4 O 1.42904 * 109.46857 * 240.00059 * 2 1 3 5 5 C 1.52998 * 109.47221 * 120.00429 * 2 1 3 6 6 C 1.52998 * 109.47198 * 183.11015 * 5 2 1 7 7 H 1.08996 * 109.50939 * 303.26563 * 6 5 2 8 8 C 1.53092 * 109.50564 * 63.39579 * 6 5 2 9 9 O 1.43092 * 109.28676 * 176.78680 * 8 6 5 10 10 C 1.43018 * 113.68691 * 301.35654 * 9 8 6 11 11 C 1.53102 * 109.29307 * 58.64269 * 10 9 8 12 12 N 1.47008 * 109.25784 * 303.13482 * 11 10 9 13 13 C 1.46903 * 110.99768 * 182.38937 * 12 11 10 14 14 C 1.50700 * 109.47080 * 66.45586 * 13 12 11 15 15 O 1.21280 * 119.99974 * 4.75875 * 14 13 12 16 16 N 1.34778 * 120.00092 * 184.76358 * 14 13 12 17 17 C 1.46498 * 120.00256 * 185.19539 * 16 14 13 18 18 C 1.50698 * 109.47176 * 89.99815 * 17 16 14 19 19 H 1.08000 * 119.99908 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99955 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99888 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99705 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47556 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46956 * 120.00289 * 22 20 18 25 25 H 1.48494 * 109.47436 * 239.99876 * 22 20 18 26 26 C 1.46507 * 119.99805 * 5.19069 * 16 14 13 27 27 C 1.53000 * 109.46720 * 85.68105 * 26 16 14 28 28 C 1.47200 * 109.46905 * 185.00849 * 27 26 16 29 29 N 7.61117 * 105.96368 * 181.84843 * 2 1 3 30 30 H 1.08998 * 109.46869 * 299.99565 * 1 2 3 31 31 H 1.09003 * 109.46976 * 59.99669 * 1 2 3 32 32 H 1.08999 * 109.47366 * 179.97438 * 1 2 3 33 33 H 0.96696 * 114.00711 * 304.97869 * 4 2 1 34 34 H 1.09007 * 109.47094 * 63.10885 * 5 2 1 35 35 H 1.09001 * 109.47228 * 303.11418 * 5 2 1 36 36 H 1.09009 * 109.50684 * 296.71620 * 8 6 5 37 37 H 1.08997 * 109.51156 * 56.80081 * 8 6 5 38 38 H 1.08998 * 109.50985 * 298.68919 * 10 9 8 39 39 H 1.09003 * 109.51241 * 178.60033 * 10 9 8 40 40 H 1.09005 * 109.50254 * 63.07068 * 11 10 9 41 41 H 1.08997 * 109.50665 * 183.19359 * 11 10 9 42 42 H 1.08995 * 109.47382 * 186.45281 * 13 12 11 43 43 H 1.09004 * 109.47437 * 306.45288 * 13 12 11 44 44 H 1.09000 * 109.47133 * 209.99985 * 17 16 14 45 45 H 1.09002 * 109.46794 * 329.99876 * 17 16 14 46 46 H 0.97001 * 119.99495 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.47005 * 205.67213 * 26 16 14 48 48 H 1.08993 * 109.46914 * 325.67886 * 26 16 14 49 49 H 1.09007 * 109.46916 * 305.00044 * 27 26 16 50 50 H 1.08999 * 109.47975 * 65.00226 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2492 6 6 3.5680 -0.6539 1.2889 7 1 3.9752 -1.0823 0.3731 8 6 4.0122 0.8059 1.4130 9 8 5.4377 0.8582 1.5252 10 6 5.9531 0.1308 2.6435 11 6 5.5285 -1.3360 2.5320 12 7 4.0628 -1.4114 2.4476 13 6 3.6096 -2.8078 2.3962 14 6 3.9200 -3.4852 3.7061 15 8 4.3858 -2.8447 4.6246 16 7 3.6801 -4.8029 3.8568 17 6 3.8740 -5.4381 5.1626 18 6 2.5904 -5.3713 5.9493 19 1 1.7176 -4.9022 5.5197 20 6 2.5306 -5.9082 7.2178 21 7 3.5936 -6.4790 7.7411 22 14 0.9396 -5.8247 8.1932 23 1 -0.1004 -5.1375 7.3861 24 1 0.4850 -7.2007 8.5174 25 1 1.1693 -5.0701 9.4513 26 6 3.2253 -5.6000 2.7147 27 6 4.4367 -6.0770 1.9111 28 6 3.9775 -6.7751 0.6992 29 7 3.6233 -7.3138 -0.2360 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6599 -1.5703 -1.2723 34 1 1.7229 -1.7639 1.2217 35 1 1.6318 -0.2408 2.1383 36 1 3.6965 1.3589 0.5282 37 1 3.5603 1.2498 2.3000 38 1 5.5583 0.5547 3.5667 39 1 7.0412 0.1952 2.6495 40 1 5.9678 -1.7749 1.6361 41 1 5.8712 -1.8819 3.4109 42 1 2.5345 -2.8346 2.2192 43 1 4.1240 -3.3272 1.5876 44 1 4.1594 -6.4805 5.0207 45 1 4.6614 -4.9167 5.7069 46 1 3.5515 -6.8563 8.6337 47 1 2.6651 -6.4631 3.0742 48 1 2.5843 -4.9900 2.0783 49 1 5.0453 -5.2183 1.6271 50 1 5.0312 -6.7583 2.5197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157213445.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:55:05 Heat of formation + Delta-G solvation = -120.080429 kcal Electronic energy + Delta-G solvation = -31119.163802 eV Core-core repulsion = 26952.880033 eV Total energy + Delta-G solvation = -4166.283769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38180 -40.20012 -38.56383 -37.99830 -36.85517 -36.39074 -34.84072 -33.76859 -32.17769 -31.44056 -30.71689 -28.93578 -27.68894 -26.20807 -25.29579 -24.27901 -23.93627 -22.32361 -21.05235 -19.94522 -18.82833 -18.34936 -18.07763 -17.59033 -17.36914 -17.22259 -16.91378 -16.62130 -16.31963 -15.98377 -15.78124 -15.67136 -15.51208 -15.20285 -14.77544 -14.59184 -14.41416 -14.35941 -14.11762 -13.77230 -13.65697 -13.59734 -13.50965 -13.18469 -12.95381 -12.94559 -12.72523 -12.70044 -12.51914 -12.48996 -12.19607 -12.11206 -12.02702 -11.90738 -11.72779 -11.60699 -11.32462 -10.88103 -10.67742 -10.57490 -10.37775 -9.46580 -9.24588 -8.16363 -6.28409 1.40192 1.43130 1.52947 1.66748 1.81901 1.91262 2.19416 2.44090 2.76995 2.91676 3.12708 3.16623 3.54540 3.70366 3.73193 3.88399 3.97686 4.06723 4.12368 4.14755 4.19655 4.21656 4.25883 4.31744 4.37923 4.51163 4.55827 4.58394 4.71402 4.76195 4.82532 4.85693 4.90236 4.95105 4.95915 5.03722 5.13185 5.20428 5.26360 5.34402 5.37137 5.63708 5.85306 5.93142 6.02278 6.15216 6.19464 6.58268 6.78510 6.84588 6.89044 7.37234 7.57318 8.90406 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008767 B = 0.003528 C = 0.003268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3193.164159 B = 7934.165610 C = 8565.267731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.106 3.894 3 H 0.100 0.900 4 O -0.577 6.577 5 C -0.143 4.143 6 C 0.061 3.939 7 H 0.057 0.943 8 C 0.066 3.934 9 O -0.399 6.399 10 C 0.067 3.933 11 C 0.020 3.980 12 N -0.533 5.533 13 C 0.041 3.959 14 C 0.505 3.495 15 O -0.568 6.568 16 N -0.600 5.600 17 C 0.261 3.739 18 C -0.537 4.537 19 H 0.055 0.945 20 C 0.012 3.988 21 N -0.926 5.926 22 Si 0.956 3.044 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.287 1.287 26 C 0.115 3.885 27 C -0.038 4.038 28 C 0.245 3.755 29 N -0.485 5.485 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.386 0.614 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.055 0.945 38 H 0.049 0.951 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.032 0.968 45 H 0.004 0.996 46 H 0.264 0.736 47 H 0.089 0.911 48 H 0.101 0.899 49 H 0.127 0.873 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.052 10.767 -16.777 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.047 3.953 3 H 0.118 0.882 4 O -0.385 6.385 5 C -0.181 4.181 6 C -0.047 4.047 7 H 0.075 0.925 8 C -0.011 4.011 9 O -0.317 6.317 10 C -0.009 4.009 11 C -0.107 4.107 12 N -0.259 5.259 13 C -0.089 4.089 14 C 0.293 3.707 15 O -0.446 6.446 16 N -0.331 5.331 17 C 0.140 3.860 18 C -0.576 4.576 19 H 0.073 0.927 20 C -0.187 4.187 21 N -0.566 5.566 22 Si 0.782 3.218 23 H -0.191 1.191 24 H -0.200 1.200 25 H -0.213 1.213 26 C -0.010 4.010 27 C -0.079 4.079 28 C -0.073 4.073 29 N -0.163 5.163 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.235 0.765 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.140 0.860 43 H 0.104 0.896 44 H 0.050 0.950 45 H 0.022 0.978 46 H 0.073 0.927 47 H 0.107 0.893 48 H 0.119 0.881 49 H 0.144 0.856 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.032 11.079 -17.313 20.654 hybrid contribution -0.572 -1.154 1.235 1.785 sum -2.604 9.924 -16.077 19.072 Atomic orbital electron populations 1.22472 0.95231 1.03233 1.03113 1.21918 0.93547 0.96484 0.83346 0.88216 1.86570 1.73624 1.33335 1.44952 1.22400 0.93258 1.02684 0.99790 1.22214 0.96327 0.95013 0.91171 0.92543 1.22891 0.80637 0.94977 1.02601 1.87964 1.21898 1.72992 1.48873 1.22665 0.99923 0.89584 0.88775 1.22801 0.87577 0.98669 1.01700 1.61799 1.10861 1.11175 1.42035 1.22156 1.03836 0.88979 0.93917 1.20997 0.77691 0.81767 0.90216 1.90645 1.45215 1.64461 1.44317 1.48078 1.66005 1.08017 1.11032 1.18783 0.95384 0.92295 0.79532 1.21784 0.98052 1.36957 1.00786 0.92709 1.25704 0.99516 0.94988 0.98524 1.70032 1.30294 1.39394 1.16912 0.85532 0.79933 0.77904 0.78424 1.19078 1.20011 1.21277 1.21491 0.94985 0.97494 0.87043 1.19832 0.99668 1.01067 0.87373 1.29088 0.92165 0.92307 0.93699 1.81261 1.10184 1.11358 1.13475 0.91074 0.91618 0.91623 0.76465 0.90163 0.90311 0.86909 0.92663 0.93246 0.86871 0.93519 0.90207 0.85978 0.89635 0.94961 0.97797 0.92659 0.89288 0.88073 0.85560 0.85916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 9.49 71.98 0.68 -1.27 16 2 C 0.11 1.36 3.41 30.59 0.10 1.47 16 3 H 0.10 1.27 6.44 -2.39 -0.02 1.26 16 4 O -0.58 -8.38 12.75 -148.98 -1.90 -10.28 16 5 C -0.14 -2.21 4.24 30.59 0.13 -2.08 16 6 C 0.06 1.19 1.99 44.92 0.09 1.28 16 7 H 0.06 1.15 7.68 -2.39 -0.02 1.13 16 8 C 0.07 1.33 5.93 72.01 0.43 1.76 16 9 O -0.40 -9.73 10.83 -148.98 -1.61 -11.34 16 10 C 0.07 1.61 7.01 72.02 0.50 2.11 16 11 C 0.02 0.53 5.30 86.32 0.46 0.98 16 12 N -0.53 -13.42 4.24 -874.56 -3.71 -17.13 16 13 C 0.04 0.97 3.71 85.56 0.32 1.29 16 14 C 0.51 17.53 7.24 87.66 0.63 18.17 16 15 O -0.57 -25.83 14.15 -3.03 -0.04 -25.87 16 16 N -0.60 -20.56 2.46 -826.15 -2.04 -22.59 16 17 C 0.26 12.27 5.18 85.63 0.44 12.71 16 18 C -0.54 -28.23 9.39 25.60 0.24 -27.99 16 19 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 20 C 0.01 0.64 5.46 84.66 0.46 1.10 16 21 N -0.93 -53.01 13.29 21.45 0.28 -52.73 16 22 Si 0.96 42.86 29.54 68.60 2.03 44.88 16 23 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 26 C 0.11 2.63 5.08 86.38 0.44 3.07 16 27 C -0.04 -0.66 5.89 28.79 0.17 -0.49 16 28 C 0.24 4.99 15.43 89.44 1.38 6.37 16 29 N -0.48 -12.71 18.54 20.01 0.37 -12.34 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.39 3.25 9.03 -74.06 -0.67 2.58 16 34 H 0.08 1.12 5.99 -2.38 -0.01 1.10 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.87 6.62 -2.38 -0.02 1.85 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.08 2.50 6.06 -2.39 -0.01 2.49 16 42 H 0.12 2.43 5.35 -2.39 -0.01 2.42 16 43 H 0.09 1.51 6.72 -2.38 -0.02 1.49 16 44 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 45 H 0.00 0.22 7.36 -2.39 -0.02 0.20 16 46 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 47 H 0.09 2.23 8.04 -2.39 -0.02 2.21 16 48 H 0.10 1.73 6.73 -2.39 -0.02 1.72 16 49 H 0.13 1.70 7.10 -2.38 -0.02 1.69 16 50 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -74.07 402.48 0.16 -73.92 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.29 Total: 14.99 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 6.48 Total: 18.49 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -5.09 Total: -104.78 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -3.56 Total: -47.49 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -74.07 0.16 -73.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157213445.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.164 kcal (2) G-P(sol) polarization free energy of solvation -74.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds