Wall clock time and date at job start Tue Mar 31 2020 22:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42905 * 114.00255 * 2 1 4 4 C 1.52994 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.50699 * 54.92141 * 4 3 2 6 6 C 1.53098 * 109.50432 * 175.00053 * 4 3 2 7 7 N 1.47013 * 109.26013 * 176.78365 * 6 4 3 8 8 C 1.46897 * 111.00400 * 177.60875 * 7 6 4 9 9 C 1.50704 * 109.46964 * 293.65624 * 8 7 6 10 10 O 1.21276 * 120.00114 * 353.78560 * 9 8 7 11 11 N 1.34783 * 119.99681 * 173.79040 * 9 8 7 12 12 C 1.46500 * 119.99490 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.46976 * 269.99722 * 12 11 9 14 14 H 1.07990 * 120.00386 * 0.02562 * 13 12 11 15 15 C 1.37877 * 119.99903 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00211 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99907 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47444 * 89.99986 * 17 15 13 19 19 H 1.48507 * 109.47116 * 210.00234 * 17 15 13 20 20 H 1.48502 * 109.47258 * 329.99903 * 17 15 13 21 21 C 1.46497 * 120.00182 * 359.97438 * 11 9 8 22 22 C 1.52999 * 109.47101 * 89.99977 * 21 11 9 23 23 C 1.47197 * 109.47002 * 179.97438 * 22 21 11 24 24 N 9.03615 * 151.81503 * 189.28716 * 4 1 2 25 25 C 1.47009 * 110.75432 * 301.38861 * 7 6 4 26 26 C 1.53097 * 109.25979 * 58.61088 * 25 7 6 27 27 H 1.09001 * 109.54105 * 63.10820 * 26 25 7 28 28 C 1.52999 * 109.50911 * 183.21539 * 26 25 7 29 29 O 1.43011 * 109.50903 * 294.78580 * 4 3 2 30 30 H 1.09000 * 109.47258 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46861 * 299.99292 * 1 2 3 32 32 H 1.08999 * 109.47333 * 59.99795 * 1 2 3 33 33 H 1.08996 * 109.46345 * 60.00012 * 3 2 1 34 34 H 1.09002 * 109.47071 * 300.00557 * 3 2 1 35 35 H 1.09004 * 109.50630 * 56.85037 * 6 4 3 36 36 H 1.09004 * 109.54757 * 296.74372 * 6 4 3 37 37 H 1.08995 * 109.47391 * 173.65099 * 8 7 6 38 38 H 1.09003 * 109.46663 * 53.64853 * 8 7 6 39 39 H 1.08997 * 109.47342 * 30.00296 * 12 11 9 40 40 H 1.09001 * 109.46845 * 149.99913 * 12 11 9 41 41 H 0.97003 * 120.00570 * 180.02562 * 16 15 13 42 42 H 1.08999 * 109.47257 * 330.00064 * 21 11 9 43 43 H 1.08997 * 109.47275 * 210.00400 * 21 11 9 44 44 H 1.09009 * 109.47011 * 60.00101 * 22 21 11 45 45 H 1.08997 * 109.47401 * 300.00345 * 22 21 11 46 46 H 1.08999 * 109.51257 * 178.54822 * 25 7 6 47 47 H 1.09005 * 109.50765 * 298.67857 * 25 7 6 48 48 H 1.09002 * 109.47013 * 179.78297 * 28 26 25 49 49 H 1.08997 * 109.47466 * 299.78687 * 28 26 25 50 50 H 1.09007 * 109.46824 * 59.79125 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8520 0.5671 -0.8400 6 6 4.1586 2.5774 -0.1251 7 7 5.6222 2.4627 -0.0464 8 6 6.2631 3.7730 -0.2199 9 6 6.0235 4.2675 -1.6232 10 8 5.4807 3.5485 -2.4351 11 7 6.4125 5.5089 -1.9759 12 6 6.1801 5.9894 -3.3402 13 6 7.3667 5.6451 -4.2030 14 1 8.2095 5.1205 -3.7778 15 6 7.3765 5.9998 -5.5353 16 7 8.4122 5.6998 -6.2881 17 14 5.9184 6.9066 -6.2710 18 1 6.1265 8.3708 -6.1358 19 1 5.7910 6.5554 -7.7083 20 1 4.6785 6.5146 -5.5539 21 6 7.0678 6.3776 -0.9949 22 6 8.5815 6.1631 -1.0545 23 6 9.2399 7.0364 -0.0693 24 7 9.7493 7.7085 0.6930 25 6 6.0286 1.8413 1.2224 26 6 5.3866 0.4559 1.3346 27 1 5.7575 -0.1837 0.5337 28 6 5.7407 -0.1631 2.6882 29 8 3.9664 0.5838 1.2248 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.7992 3.2115 0.6854 36 1 3.8789 3.0170 -1.0826 37 1 7.3349 3.6792 -0.0458 38 1 5.8399 4.4815 0.4922 39 1 5.2864 5.5148 -3.7452 40 1 6.0426 7.0706 -3.3261 41 1 8.4192 5.9498 -7.2254 42 1 6.7056 6.1353 0.0042 43 1 6.8391 7.4189 -1.2217 44 1 8.9437 6.4054 -2.0537 45 1 8.8102 5.1218 -0.8278 46 1 7.1138 1.7427 1.2483 47 1 5.6990 2.4636 2.0544 48 1 5.2802 -1.1478 2.7690 49 1 6.8231 -0.2603 2.7714 50 1 5.3708 0.4777 3.4887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189475805.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:41 Heat of formation + Delta-G solvation = -81.088068 kcal Electronic energy + Delta-G solvation = -30563.055617 eV Core-core repulsion = 26398.462683 eV Total energy + Delta-G solvation = -4164.592934 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.24689 -39.14110 -37.77283 -36.82806 -35.70634 -35.11119 -33.36529 -32.78176 -30.95649 -30.37190 -28.91480 -27.39121 -27.07510 -25.63189 -24.07014 -23.47593 -22.11212 -21.88133 -20.49660 -18.65089 -17.67495 -17.04418 -16.81925 -16.69466 -16.63020 -16.18832 -15.73278 -15.51084 -15.37631 -15.09289 -14.81283 -14.57199 -14.40728 -14.00239 -13.70147 -13.57201 -13.37630 -12.98348 -12.73879 -12.67003 -12.59248 -12.44824 -12.36215 -12.25841 -12.08170 -11.81643 -11.74202 -11.70378 -11.59598 -11.31178 -11.09058 -11.03206 -10.82281 -10.57610 -10.54036 -10.18338 -9.85750 -9.73058 -9.57627 -9.11449 -8.66113 -8.37905 -7.95183 -6.15864 -4.15600 2.77641 2.89619 3.18023 3.21195 3.24264 3.32619 3.33802 3.48689 3.55927 3.92640 4.25401 4.33428 4.65549 4.77739 4.84541 4.87423 4.94595 5.00359 5.05299 5.10385 5.13267 5.15668 5.19411 5.23190 5.24978 5.27086 5.32787 5.35534 5.42207 5.44307 5.46953 5.53646 5.58948 5.78091 5.85186 5.88640 5.92306 6.00875 6.17361 6.50015 6.74757 6.82467 6.90719 6.96868 7.16027 7.18534 7.51950 7.65447 8.03570 8.36987 8.80719 8.87104 9.44195 10.96817 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009459 B = 0.003337 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2959.549140 B = 8387.784691 C =10479.292966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.072 3.928 4 C 0.100 3.900 5 H 0.079 0.921 6 C 0.025 3.975 7 N -0.516 5.516 8 C 0.035 3.965 9 C 0.511 3.489 10 O -0.511 6.511 11 N -0.595 5.595 12 C 0.215 3.785 13 C -0.532 4.532 14 H 0.079 0.921 15 C 0.075 3.925 16 N -0.894 5.894 17 Si 0.872 3.128 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.264 1.264 21 C 0.123 3.877 22 C -0.054 4.054 23 C 0.219 3.781 24 N -0.453 5.453 25 C 0.023 3.977 26 C 0.090 3.910 27 H 0.069 0.931 28 C -0.142 4.142 29 O -0.374 6.374 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.059 0.941 39 H 0.043 0.957 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.135 0.865 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.066 0.934 49 H 0.072 0.928 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.061 -6.917 16.685 20.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.005 4.005 4 C 0.042 3.958 5 H 0.097 0.903 6 C -0.103 4.103 7 N -0.240 5.240 8 C -0.096 4.096 9 C 0.296 3.704 10 O -0.386 6.386 11 N -0.328 5.328 12 C 0.095 3.905 13 C -0.570 4.570 14 H 0.097 0.903 15 C -0.128 4.128 16 N -0.532 5.532 17 Si 0.699 3.301 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.189 1.189 21 C -0.004 4.004 22 C -0.095 4.095 23 C -0.099 4.099 24 N -0.131 5.131 25 C -0.105 4.105 26 C 0.032 3.968 27 H 0.087 0.913 28 C -0.200 4.200 29 O -0.293 6.293 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.075 0.925 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.153 0.847 45 H 0.124 0.876 46 H 0.106 0.894 47 H 0.060 0.940 48 H 0.085 0.915 49 H 0.091 0.909 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.399 -6.819 16.927 20.527 hybrid contribution -0.889 1.229 -0.453 1.583 sum -10.287 -5.589 16.474 20.211 Atomic orbital electron populations 1.22738 0.81175 1.02719 0.99887 1.87936 1.19441 1.27306 1.95386 1.22476 0.91768 0.85324 1.00980 1.22029 0.92117 0.93433 0.88216 0.90264 1.22787 0.87568 0.96670 1.03242 1.61739 1.07195 1.21752 1.33329 1.22139 1.01367 0.90271 0.95794 1.20146 0.79628 0.81501 0.89095 1.90680 1.41720 1.54003 1.52178 1.47941 1.58075 1.13593 1.13189 1.19737 0.98665 0.94206 0.77887 1.21307 1.03031 1.38485 0.94220 0.90301 1.24840 0.95662 0.95442 0.96862 1.69878 1.29628 1.46605 1.07058 0.86916 0.83870 0.80171 0.79176 1.20162 1.21008 1.18867 1.21294 0.89734 0.96618 0.92707 1.20001 0.95481 0.97041 0.97009 1.29310 0.93383 0.93659 0.93524 1.81222 1.09640 1.10625 1.11564 1.22884 1.01282 0.96174 0.90131 1.22122 0.81270 0.94818 0.98597 0.91270 1.21729 1.01507 1.01421 0.95316 1.87998 1.21376 1.81610 1.38351 0.89651 0.94193 0.94046 0.92672 0.91391 0.94439 0.87616 0.87750 0.92319 0.93924 0.95507 0.92487 0.90850 0.89469 0.84714 0.87624 0.89407 0.93989 0.91523 0.90928 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.75 10.67 -39.73 -0.42 -5.17 16 3 C 0.07 0.82 5.60 37.15 0.21 1.02 16 4 C 0.10 1.30 3.09 -26.68 -0.08 1.22 16 5 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 6 C 0.03 0.33 4.58 -3.71 -0.02 0.31 16 7 N -0.52 -6.83 4.42 -235.75 -1.04 -7.87 16 8 C 0.04 0.44 4.18 -4.98 -0.02 0.42 16 9 C 0.51 8.73 7.24 -10.98 -0.08 8.65 16 10 O -0.51 -11.03 14.25 5.56 0.08 -10.95 16 11 N -0.60 -9.98 2.46 -175.06 -0.43 -10.41 16 12 C 0.22 4.56 4.27 -5.19 -0.02 4.53 16 13 C -0.53 -13.51 9.47 -34.44 -0.33 -13.83 16 14 H 0.08 2.15 7.67 -52.49 -0.40 1.74 16 15 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 16 N -0.89 -25.87 13.96 55.43 0.77 -25.10 16 17 Si 0.87 20.14 27.47 -169.99 -4.67 15.47 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.26 -5.92 6.54 56.52 0.37 -5.55 16 21 C 0.12 1.48 5.23 -4.04 -0.02 1.46 16 22 C -0.05 -0.65 6.03 -29.52 -0.18 -0.82 16 23 C 0.22 2.82 15.44 -20.74 -0.32 2.50 16 24 N -0.45 -6.90 18.54 42.18 0.78 -6.12 16 25 C 0.02 0.25 4.93 -3.71 -0.02 0.23 16 26 C 0.09 0.99 3.43 -26.68 -0.09 0.90 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 28 C -0.14 -1.19 9.57 37.16 0.36 -0.83 16 29 O -0.37 -4.90 10.08 -39.73 -0.40 -5.31 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.11 1.59 6.10 -51.93 -0.32 1.27 16 37 H 0.10 1.11 7.31 -51.93 -0.38 0.73 16 38 H 0.06 0.60 7.04 -51.93 -0.37 0.24 16 39 H 0.04 1.00 6.48 -51.93 -0.34 0.66 16 40 H 0.03 0.53 7.32 -51.93 -0.38 0.15 16 41 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.07 0.68 6.27 -51.93 -0.33 0.35 16 43 H 0.09 1.00 7.89 -51.93 -0.41 0.59 16 44 H 0.14 1.95 7.26 -51.92 -0.38 1.57 16 45 H 0.11 1.11 7.41 -51.93 -0.38 0.73 16 46 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 47 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 407.01 15.07 6.13 6.13 Total: -1.00 -33.59 407.01 -7.13 -40.72 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -8.34 Total: -0.46 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 0.40 Total: 9.05 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.08 Total: -49.49 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -0.75 Total: -21.43 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.67 Total: 15.47 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.59 -7.13 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189475805.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.368 kcal (2) G-P(sol) polarization free energy of solvation -33.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds