Wall clock time and date at job start Tue Mar 31 2020 22:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46798 * 2 1 4 4 C 1.53000 * 109.47219 * 120.00344 * 2 1 3 5 5 O 1.42899 * 109.47053 * 175.00192 * 4 2 1 6 6 C 1.42894 * 114.00165 * 179.97438 * 5 4 2 7 7 H 1.09009 * 109.46863 * 30.00099 * 6 5 4 8 8 C 1.52997 * 109.47598 * 270.00053 * 6 5 4 9 9 C 1.50699 * 109.47105 * 149.99876 * 6 5 4 10 10 N 1.29944 * 126.28735 * 45.02805 * 9 6 5 11 11 O 1.21308 * 110.25054 * 180.02562 * 10 9 6 12 12 C 1.33645 * 109.80970 * 359.97438 * 11 10 9 13 13 C 1.50697 * 126.54637 * 179.97438 * 12 11 10 14 14 N 1.46499 * 109.47293 * 270.02369 * 13 12 11 15 15 C 1.46499 * 120.00136 * 270.00491 * 14 13 12 16 16 C 1.34784 * 119.99893 * 90.00297 * 14 13 12 17 17 O 1.21283 * 119.99649 * 0.02562 * 16 14 13 18 18 C 1.50697 * 119.99774 * 179.72962 * 16 14 13 19 19 C 1.53003 * 109.46624 * 180.02562 * 18 16 14 20 20 C 1.50702 * 109.46956 * 179.97438 * 19 18 16 21 21 H 1.08004 * 119.99792 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00025 * 179.97438 * 20 19 18 23 23 N 1.31515 * 120.00104 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99859 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46826 * 60.00434 * 24 22 20 26 26 H 1.48507 * 109.47116 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47422 * 300.00242 * 24 22 20 28 28 N 1.31130 * 106.89791 * 0.23207 * 12 11 10 29 29 H 1.09002 * 109.47305 * 299.99600 * 1 2 3 30 30 H 1.08993 * 109.47667 * 59.99950 * 1 2 3 31 31 H 1.09009 * 109.47266 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46910 * 240.00142 * 2 1 3 33 33 H 1.09002 * 109.46866 * 60.00131 * 3 2 1 34 34 H 1.08996 * 109.46881 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47073 * 299.99977 * 3 2 1 36 36 H 1.08997 * 109.47405 * 54.99685 * 4 2 1 37 37 H 1.09000 * 109.46628 * 294.99958 * 4 2 1 38 38 H 1.08998 * 109.46959 * 59.99592 * 8 6 5 39 39 H 1.08995 * 109.47366 * 179.97438 * 8 6 5 40 40 H 1.09002 * 109.46694 * 299.99993 * 8 6 5 41 41 H 1.08997 * 109.46951 * 150.02684 * 13 12 11 42 42 H 1.08998 * 109.47681 * 30.02738 * 13 12 11 43 43 H 1.08999 * 109.47256 * 269.99572 * 15 14 13 44 44 H 1.08998 * 109.47416 * 29.99674 * 15 14 13 45 45 H 1.09008 * 109.47058 * 150.00274 * 15 14 13 46 46 H 1.09001 * 109.46809 * 299.99238 * 18 16 14 47 47 H 1.08993 * 109.47525 * 59.99679 * 18 16 14 48 48 H 1.09001 * 109.46782 * 299.99104 * 19 18 16 49 49 H 1.08993 * 109.47555 * 59.99547 * 19 18 16 50 50 H 0.97001 * 119.99843 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8238 1.1919 6 6 4.0451 -1.4846 2.3179 7 1 3.3407 -2.2170 2.7126 8 6 4.3710 -0.4549 3.4015 9 6 5.3106 -2.1835 1.8923 10 7 6.2468 -1.6882 1.1395 11 8 7.1327 -2.5016 0.9812 12 6 6.8369 -3.6271 1.6383 13 6 7.6742 -4.8787 1.6968 14 7 7.3000 -5.7685 0.5948 15 6 6.2405 -6.7625 0.7834 16 6 7.9305 -5.6727 -0.5926 17 8 8.8080 -4.8500 -0.7486 18 6 7.5498 -6.5921 -1.7242 19 6 8.4110 -6.2771 -2.9490 20 6 8.0307 -7.1970 -4.0805 21 1 7.2529 -7.9329 -3.9400 22 6 8.6758 -7.0990 -5.2951 23 7 9.6233 -6.2031 -5.4661 24 14 8.2048 -8.2397 -6.6974 25 1 6.7721 -8.0434 -7.0353 26 1 9.0398 -7.9331 -7.8867 27 1 8.4278 -9.6489 -6.2855 28 7 5.6762 -3.4362 2.2179 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1369 38 1 3.4557 0.0506 3.7093 39 1 4.8137 -0.9591 4.2605 40 1 5.0753 0.2774 3.0068 41 1 7.5043 -5.3855 2.6467 42 1 8.7282 -4.6152 1.6091 43 1 6.6761 -7.6936 1.1458 44 1 5.5194 -6.3912 1.5116 45 1 5.7376 -6.9423 -0.1669 46 1 7.7129 -7.6267 -1.4223 47 1 6.4983 -6.4474 -1.9720 48 1 8.2483 -5.2425 -3.2511 49 1 9.4624 -6.4222 -2.7010 50 1 10.0768 -6.1340 -6.3207 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291827670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:24 Heat of formation + Delta-G solvation = -53.640605 kcal Electronic energy + Delta-G solvation = -29528.683184 eV Core-core repulsion = 25365.280461 eV Total energy + Delta-G solvation = -4163.402722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -46.76749 -40.98911 -39.86559 -37.39227 -36.93846 -35.99739 -35.61288 -34.10745 -32.97417 -31.87636 -29.69829 -28.06529 -27.93339 -27.30924 -26.82684 -25.85709 -24.62383 -23.43604 -22.04386 -21.28184 -20.22550 -19.28123 -18.82162 -18.74857 -18.03177 -17.62368 -17.08862 -16.93863 -16.80239 -16.63270 -16.44226 -15.68990 -15.32166 -14.91322 -14.71602 -14.41387 -14.23010 -14.18164 -13.94697 -13.77929 -13.73244 -13.39264 -13.35412 -13.22323 -13.21008 -12.99505 -12.91984 -12.78407 -12.76310 -12.49039 -12.44757 -12.18934 -12.02407 -11.91915 -11.88765 -11.60105 -11.58643 -11.36686 -11.32061 -10.78863 -10.73234 -10.55933 -9.99018 -8.17810 -6.32038 -0.08188 0.89607 1.41832 1.44631 1.46475 1.54063 1.83347 2.01555 2.08816 2.43205 2.79511 2.99675 3.15215 3.61733 3.72009 3.84012 3.89940 3.94873 4.03752 4.15613 4.20268 4.27156 4.31305 4.38440 4.46143 4.50646 4.51626 4.55454 4.61715 4.63202 4.70308 4.76699 4.78855 4.80370 4.93919 4.95313 4.99452 5.07448 5.09312 5.19619 5.33623 5.35979 5.37929 5.49882 5.62235 5.84776 6.05237 6.16473 6.19674 6.86046 6.98829 7.12583 7.38271 8.94674 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.002435 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.073157 B =11493.994723 C =13199.498715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 C -0.142 4.142 4 C 0.061 3.939 5 O -0.398 6.398 6 C 0.180 3.820 7 H 0.114 0.886 8 C -0.160 4.160 9 C 0.161 3.839 10 N -0.389 5.389 11 O 0.064 5.936 12 C 0.172 3.828 13 C 0.205 3.795 14 N -0.613 5.613 15 C 0.071 3.929 16 C 0.510 3.490 17 O -0.570 6.570 18 C -0.114 4.114 19 C 0.042 3.958 20 C -0.543 4.543 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.938 5.938 24 Si 0.973 3.027 25 H -0.264 1.264 26 H -0.289 1.289 27 H -0.259 1.259 28 N -0.467 5.467 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.038 0.962 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.050 0.950 41 H 0.174 0.826 42 H 0.116 0.884 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.113 0.887 47 H 0.097 0.903 48 H -0.024 1.024 49 H -0.013 1.013 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.321 6.271 23.543 31.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 C -0.199 4.199 4 C -0.014 4.014 5 O -0.317 6.317 6 C 0.121 3.879 7 H 0.131 0.869 8 C -0.218 4.218 9 C -0.113 4.113 10 N -0.099 5.099 11 O 0.007 5.993 12 C -0.051 4.051 13 C 0.080 3.920 14 N -0.348 5.348 15 C -0.070 4.070 16 C 0.300 3.700 17 O -0.448 6.448 18 C -0.154 4.154 19 C 0.004 3.996 20 C -0.581 4.581 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.578 5.578 24 Si 0.797 3.203 25 H -0.189 1.189 26 H -0.214 1.214 27 H -0.183 1.183 28 N -0.202 5.202 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.116 0.884 39 H 0.100 0.900 40 H 0.070 0.930 41 H 0.191 0.809 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.131 0.869 47 H 0.116 0.884 48 H -0.005 1.005 49 H 0.005 0.995 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.035 7.536 23.090 30.859 hybrid contribution 0.489 -0.173 -1.156 1.267 sum -18.546 7.363 21.933 29.652 Atomic orbital electron populations 1.21744 0.92152 1.02654 1.03133 1.21146 0.97090 0.96642 0.96934 1.21758 1.00444 0.95336 1.02370 1.22917 0.78673 1.00439 0.99393 1.87995 1.22423 1.78256 1.43042 1.20226 0.86787 0.94135 0.86743 0.86872 1.22213 1.04031 0.98460 0.97117 1.26224 0.99319 0.89512 0.96199 1.74713 1.00345 1.15583 1.19211 1.85412 1.38185 1.20564 1.55105 1.30135 0.93201 0.92503 0.89233 1.20257 0.97176 0.80883 0.93715 1.48065 1.39268 1.36375 1.11066 1.22198 0.89335 0.91473 1.04040 1.21567 0.80523 0.83773 0.84127 1.90695 1.32957 1.38743 1.82431 1.21653 1.01869 0.99526 0.92338 1.18704 0.93984 0.94778 0.92140 1.21676 1.20410 1.18743 0.97264 0.90501 1.26144 0.94809 0.97338 1.02190 1.70175 1.25600 1.36488 1.25519 0.85389 0.78426 0.79167 0.77358 1.18886 1.21445 1.18350 1.71806 1.10107 1.13807 1.24493 0.91017 0.91667 0.91995 0.92653 0.91354 0.94269 0.92301 0.92136 0.90578 0.88359 0.89973 0.93049 0.80881 0.86602 0.89046 0.88996 0.90587 0.86938 0.88440 1.00513 0.99453 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.19 71.98 0.66 -0.86 16 2 C -0.10 -1.62 3.16 -10.79 -0.03 -1.65 16 3 C -0.14 -2.34 9.09 71.98 0.65 -1.69 16 4 C 0.06 0.97 5.13 71.98 0.37 1.33 16 5 O -0.40 -9.40 9.51 -148.98 -1.42 -10.81 16 6 C 0.18 3.69 3.27 29.85 0.10 3.79 16 7 H 0.11 1.75 7.79 -2.38 -0.02 1.73 16 8 C -0.16 -2.48 9.51 71.98 0.68 -1.79 16 9 C 0.16 4.51 7.10 138.46 0.98 5.49 16 10 N -0.39 -13.41 12.16 -60.29 -0.73 -14.14 16 11 O 0.06 2.23 11.31 74.81 0.85 3.07 16 12 C 0.17 4.68 8.10 88.38 0.72 5.39 16 13 C 0.21 4.33 6.03 85.63 0.52 4.85 16 14 N -0.61 -15.60 2.86 -851.13 -2.43 -18.04 16 15 C 0.07 1.16 10.24 127.77 1.31 2.47 16 16 C 0.51 19.21 7.67 87.65 0.67 19.88 16 17 O -0.57 -27.20 15.56 -3.04 -0.05 -27.25 16 18 C -0.11 -4.53 4.20 29.85 0.13 -4.40 16 19 C 0.04 2.32 4.26 29.85 0.13 2.45 16 20 C -0.54 -30.93 9.11 25.60 0.23 -30.70 16 21 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 22 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 23 N -0.94 -60.12 13.29 21.45 0.28 -59.83 16 24 Si 0.97 44.46 29.54 68.60 2.03 46.48 16 25 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 27 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 28 N -0.47 -11.97 11.55 -303.18 -3.50 -15.47 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.04 0.84 7.82 -2.39 -0.02 0.82 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 36 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 37 H 0.08 0.83 7.87 -2.39 -0.02 0.81 16 38 H 0.10 0.99 7.87 -2.39 -0.02 0.97 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.17 1.90 8.07 -2.39 -0.02 1.88 16 42 H 0.12 2.65 7.42 -2.39 -0.02 2.63 16 43 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.09 1.19 8.07 -2.39 -0.02 1.17 16 45 H 0.08 1.35 6.44 -2.38 -0.02 1.33 16 46 H 0.11 3.78 8.11 -2.39 -0.02 3.76 16 47 H 0.10 3.51 7.39 -2.39 -0.02 3.49 16 48 H -0.02 -1.52 8.10 -2.39 -0.02 -1.54 16 49 H -0.01 -0.81 8.10 -2.39 -0.02 -0.83 16 50 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -84.63 419.07 3.51 -81.12 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.91 Total: 10.28 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 7.58 Total: 4.59 kcal Atomic # 7 Polarization: -101.10 SS G_CDS: -6.38 Total: -107.48 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.62 Total: -34.99 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -84.63 3.51 -81.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291827670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.475 kcal (2) G-P(sol) polarization free energy of solvation -84.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds