Wall clock time and date at job start Tue Mar 31 2020 23:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.50699 * 109.46636 * 174.99847 * 4 2 1 6 6 O 1.21280 * 120.00199 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99691 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99759 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47214 * 180.02562 * 8 7 5 10 10 O 1.21295 * 119.99553 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99963 * 180.02562 * 9 8 7 12 12 C 1.37104 * 119.99613 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99904 * 359.97438 * 12 11 9 14 14 C 1.38945 * 119.99645 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99785 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00399 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47241 * 89.99404 * 16 14 12 18 18 H 1.48494 * 109.47575 * 209.99620 * 16 14 12 19 19 H 1.48501 * 109.47037 * 330.00179 * 16 14 12 20 20 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 21 21 C 1.34784 * 119.99635 * 274.99773 * 20 2 1 22 22 O 1.21279 * 119.99925 * 359.97438 * 21 20 2 23 23 C 1.50700 * 119.99961 * 180.02562 * 21 20 2 24 24 C 1.53003 * 109.46986 * 300.00090 * 23 21 20 25 25 C 1.53005 * 109.47219 * 180.02562 * 24 23 21 26 26 C 1.52994 * 109.46906 * 59.99762 * 25 24 23 27 27 C 1.52998 * 109.47366 * 299.99803 * 26 25 24 28 28 C 1.52992 * 109.47257 * 180.02562 * 23 21 20 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 33 33 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 34 34 H 0.96994 * 119.99679 * 0.02562 * 7 5 4 35 35 H 1.08995 * 109.47725 * 300.00913 * 8 7 5 36 36 H 1.09002 * 109.47122 * 60.00751 * 8 7 5 37 37 H 0.96998 * 120.00158 * 359.97438 * 11 9 8 38 38 H 0.96991 * 119.99991 * 179.97438 * 15 14 12 39 39 H 0.96995 * 120.00292 * 95.27206 * 20 2 1 40 40 H 1.08997 * 109.47392 * 59.99562 * 23 21 20 41 41 H 1.09005 * 109.46932 * 299.99942 * 24 23 21 42 42 H 1.08998 * 109.47453 * 59.99968 * 24 23 21 43 43 H 1.09000 * 109.46608 * 299.99989 * 25 24 23 44 44 H 1.08999 * 109.46783 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.46734 * 180.02562 * 26 25 24 46 46 H 1.08992 * 109.47456 * 60.00368 * 26 25 24 47 47 H 1.09000 * 109.47603 * 300.00663 * 27 26 25 48 48 H 1.08998 * 109.47444 * 180.02562 * 27 26 25 49 49 H 1.09004 * 109.47330 * 299.99977 * 28 23 21 50 50 H 1.09005 * 109.47124 * 59.99773 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1450 -0.0211 -0.4441 7 7 4.2149 -1.1805 -2.3344 8 6 5.6748 -1.0766 -2.3965 9 6 6.1772 -1.7871 -3.6269 10 8 5.3927 -2.3268 -4.3783 11 7 7.4981 -1.8229 -3.8923 12 6 7.9550 -2.4689 -5.0120 13 1 7.2566 -2.9493 -5.6810 14 6 9.3167 -2.5053 -5.2859 15 7 9.7548 -3.1249 -6.3588 16 14 10.5249 -1.6749 -4.1283 17 1 10.9604 -2.6429 -3.0896 18 1 11.7067 -1.2089 -4.8972 19 1 9.8680 -0.5129 -3.4775 20 7 2.0184 -0.6907 1.1961 21 6 2.1471 -0.0183 2.3571 22 8 1.8591 1.1585 2.4114 23 6 2.6500 -0.7286 3.5874 24 6 1.7064 -1.8829 3.9313 25 6 2.2166 -2.6037 5.1808 26 6 2.2675 -1.6203 6.3518 27 6 3.2111 -0.4661 6.0079 28 6 2.7008 0.2542 4.7588 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 3.7325 -1.6557 -3.0289 35 1 5.9629 -0.0264 -2.4407 36 1 6.1098 -1.5355 -1.5086 37 1 8.1254 -1.3911 -3.2916 38 1 10.7053 -3.1500 -6.5503 39 1 2.2528 -1.6308 1.1515 40 1 3.6492 -1.1205 3.3978 41 1 0.7070 -1.4910 4.1210 42 1 1.6698 -2.5832 3.0969 43 1 3.2160 -2.9954 4.9916 44 1 1.5441 -3.4257 5.4260 45 1 2.6314 -2.1338 7.2418 46 1 1.2681 -1.2286 6.5410 47 1 4.2105 -0.8578 5.8186 48 1 3.2477 0.2342 6.8423 49 1 3.3727 1.0769 4.5140 50 1 1.7012 0.6457 4.9482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343546485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:29 Heat of formation + Delta-G solvation = -142.051845 kcal Electronic energy + Delta-G solvation = -29487.610604 eV Core-core repulsion = 25320.374083 eV Total energy + Delta-G solvation = -4167.236521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.53778 -39.68072 -38.45847 -37.82288 -35.81791 -34.54971 -33.79076 -32.39747 -31.85176 -31.04804 -30.66833 -29.05869 -27.10499 -24.47607 -24.08609 -22.90649 -21.72780 -20.61573 -20.27685 -19.89733 -19.65951 -18.70015 -17.44712 -17.10329 -16.62733 -15.83670 -15.61309 -15.43210 -15.27790 -15.02821 -14.86541 -14.53410 -14.41055 -14.16017 -14.09260 -13.68654 -13.30209 -13.19635 -13.10649 -12.66255 -12.57841 -12.53974 -12.47132 -12.39421 -12.22855 -12.04988 -11.90141 -11.57536 -11.45588 -11.27502 -11.22320 -10.94296 -10.73257 -10.68295 -10.42742 -10.10983 -9.84155 -9.74607 -9.69511 -9.14171 -8.93924 -8.82996 -8.35314 -6.45234 -3.98078 2.63367 2.68957 2.95952 3.00599 3.07692 3.08777 3.20182 3.50706 3.99453 4.31543 4.34305 4.40956 4.46682 4.48735 4.70816 4.86192 4.87615 4.92987 4.96761 5.08729 5.09477 5.14541 5.19796 5.20656 5.25269 5.27747 5.35062 5.47663 5.50246 5.63115 5.67879 5.72371 5.73330 5.75580 5.77862 5.82828 5.83723 5.92031 5.99392 6.02541 6.13916 6.41361 6.50238 7.39087 7.42619 7.66673 7.95374 8.21026 8.29943 8.41110 8.76859 9.24950 9.57986 10.66827 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002165 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.093384 B =12929.794004 C =14170.184289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.096 0.904 4 C -0.151 4.151 5 C 0.507 3.493 6 O -0.539 6.539 7 N -0.709 5.709 8 C 0.107 3.893 9 C 0.437 3.563 10 O -0.580 6.580 11 N -0.576 5.576 12 C -0.311 4.311 13 H 0.122 0.878 14 C 0.045 3.955 15 N -0.873 5.873 16 Si 0.879 3.121 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.267 1.267 20 N -0.715 5.715 21 C 0.526 3.474 22 O -0.543 6.543 23 C -0.107 4.107 24 C -0.109 4.109 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.098 4.098 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.412 0.588 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.374 0.626 38 H 0.276 0.724 39 H 0.396 0.604 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.069 0.931 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.735 2.609 21.885 27.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.053 3.947 3 H 0.114 0.886 4 C -0.192 4.192 5 C 0.292 3.708 6 O -0.416 6.416 7 N -0.364 5.364 8 C -0.021 4.021 9 C 0.223 3.777 10 O -0.464 6.464 11 N -0.213 5.213 12 C -0.439 4.439 13 H 0.139 0.861 14 C -0.159 4.159 15 N -0.512 5.512 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.199 1.199 19 H -0.192 1.192 20 N -0.365 5.365 21 C 0.312 3.688 22 O -0.420 6.420 23 C -0.128 4.128 24 C -0.147 4.147 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.158 4.158 28 C -0.136 4.136 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.128 0.872 34 H 0.250 0.750 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.208 0.792 38 H 0.087 0.913 39 H 0.230 0.770 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.820 3.451 21.861 27.798 hybrid contribution 1.191 -0.167 0.180 1.216 sum -15.629 3.284 22.041 27.219 Atomic orbital electron populations 1.22184 0.94828 1.02211 1.02845 1.20642 0.93304 0.98128 0.82627 0.88610 1.22045 0.92964 1.03730 1.00426 1.20544 0.89856 0.78892 0.81497 1.90735 1.70151 1.42185 1.38541 1.45743 1.07188 1.56417 1.27013 1.20953 0.81438 1.01475 0.98243 1.19645 0.83312 0.86452 0.88319 1.90538 1.54788 1.50233 1.50873 1.42137 1.05765 1.49342 1.24062 1.19438 0.93195 1.30807 1.00500 0.86068 1.25074 0.96993 0.97143 0.96699 1.69615 1.15565 1.41083 1.24920 0.86669 0.81757 0.79943 0.81113 1.19374 1.19926 1.19250 1.45888 1.67420 1.13723 1.09511 1.20512 0.76825 0.87070 0.84375 1.90671 1.50090 1.15988 1.85214 1.21353 1.01044 0.97023 0.93403 1.21520 0.98788 0.96048 0.98310 1.21533 1.01615 0.97833 0.94637 1.21560 1.00022 0.96501 0.97797 1.21562 0.99193 0.97438 0.97642 1.21314 1.02542 0.97043 0.92684 0.91792 0.91424 0.92350 0.88241 0.87166 0.75030 0.89832 0.89856 0.79246 0.91337 0.76993 0.88521 0.91453 0.91567 0.91652 0.91697 0.92018 0.91966 0.91868 0.91731 0.91213 0.91340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.16 0.35 -0.93 16 2 C 0.16 1.58 2.14 -67.93 -0.15 1.43 16 3 H 0.10 1.26 7.39 -51.93 -0.38 0.88 16 4 C -0.15 -1.33 5.24 -27.88 -0.15 -1.48 16 5 C 0.51 6.69 7.69 -10.98 -0.08 6.60 16 6 O -0.54 -8.92 15.35 5.56 0.09 -8.83 16 7 N -0.71 -10.21 5.53 -61.47 -0.34 -10.55 16 8 C 0.11 1.77 6.15 -5.19 -0.03 1.73 16 9 C 0.44 9.31 7.85 -10.98 -0.09 9.22 16 10 O -0.58 -14.19 15.24 5.54 0.08 -14.11 16 11 N -0.58 -13.13 5.09 -10.96 -0.06 -13.19 16 12 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 16 13 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 14 C 0.05 1.20 5.50 -17.47 -0.10 1.10 16 15 N -0.87 -24.64 13.96 55.50 0.77 -23.87 16 16 Si 0.88 18.78 27.74 -169.99 -4.71 14.07 16 17 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.27 -5.24 6.52 56.52 0.37 -4.87 16 20 N -0.71 -7.12 4.11 -53.80 -0.22 -7.34 16 21 C 0.53 6.23 7.12 -10.98 -0.08 6.16 16 22 O -0.54 -8.47 15.64 5.56 0.09 -8.39 16 23 C -0.11 -0.97 2.53 -91.77 -0.23 -1.20 16 24 C -0.11 -0.74 5.10 -26.73 -0.14 -0.88 16 25 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 26 C -0.12 -0.75 5.92 -26.74 -0.16 -0.91 16 27 C -0.12 -0.86 5.92 -26.75 -0.16 -1.02 16 28 C -0.10 -0.90 4.49 -26.76 -0.12 -1.02 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.41 5.81 7.44 -40.82 -0.30 5.50 16 35 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.37 7.56 5.76 -40.82 -0.24 7.32 16 38 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.40 3.17 8.03 -40.82 -0.33 2.84 16 40 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.38 7.57 -51.93 -0.39 -0.01 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16 50 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 LS Contribution 404.82 15.07 6.10 6.10 Total: -1.00 -34.17 404.82 -8.01 -42.18 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -8.38 Total: 14.59 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -1.43 Total: 9.34 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.16 Total: -54.95 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: 0.26 Total: -31.33 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.71 Total: 14.07 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.17 -8.01 -42.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.874 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds