Wall clock time and date at job start Tue Mar 31 2020 23:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.50699 * 109.46636 * 174.99847 * 4 2 1 6 6 O 1.21280 * 120.00199 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99691 * 179.97438 * 5 4 2 8 8 C 1.46497 * 119.99759 * 179.97438 * 7 5 4 9 9 C 1.50705 * 109.47214 * 180.02562 * 8 7 5 10 10 O 1.21295 * 119.99553 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99963 * 180.02562 * 9 8 7 12 12 C 1.37104 * 119.99613 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99904 * 359.97438 * 12 11 9 14 14 C 1.38945 * 119.99645 * 179.97438 * 12 11 9 15 15 N 1.31416 * 119.99785 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 120.00399 * 0.02562 * 14 12 11 17 17 H 1.48508 * 109.47241 * 89.99404 * 16 14 12 18 18 H 1.48494 * 109.47575 * 209.99620 * 16 14 12 19 19 H 1.48501 * 109.47037 * 330.00179 * 16 14 12 20 20 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 21 21 C 1.34784 * 119.99635 * 274.99773 * 20 2 1 22 22 O 1.21279 * 119.99925 * 359.97438 * 21 20 2 23 23 C 1.50700 * 119.99961 * 180.02562 * 21 20 2 24 24 C 1.53003 * 109.46986 * 300.00090 * 23 21 20 25 25 C 1.53005 * 109.47219 * 180.02562 * 24 23 21 26 26 C 1.52994 * 109.46906 * 59.99762 * 25 24 23 27 27 C 1.52998 * 109.47366 * 299.99803 * 26 25 24 28 28 C 1.52992 * 109.47257 * 180.02562 * 23 21 20 29 29 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 30 30 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 31 31 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 33 33 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 34 34 H 0.96994 * 119.99679 * 0.02562 * 7 5 4 35 35 H 1.08995 * 109.47725 * 300.00913 * 8 7 5 36 36 H 1.09002 * 109.47122 * 60.00751 * 8 7 5 37 37 H 0.96998 * 120.00158 * 359.97438 * 11 9 8 38 38 H 0.96991 * 119.99991 * 179.97438 * 15 14 12 39 39 H 0.96995 * 120.00292 * 95.27206 * 20 2 1 40 40 H 1.08997 * 109.47392 * 59.99562 * 23 21 20 41 41 H 1.09005 * 109.46932 * 299.99942 * 24 23 21 42 42 H 1.08998 * 109.47453 * 59.99968 * 24 23 21 43 43 H 1.09000 * 109.46608 * 299.99989 * 25 24 23 44 44 H 1.08999 * 109.46783 * 179.97438 * 25 24 23 45 45 H 1.09005 * 109.46734 * 180.02562 * 26 25 24 46 46 H 1.08992 * 109.47456 * 60.00368 * 26 25 24 47 47 H 1.09000 * 109.47603 * 300.00663 * 27 26 25 48 48 H 1.08998 * 109.47444 * 180.02562 * 27 26 25 49 49 H 1.09004 * 109.47330 * 299.99977 * 28 23 21 50 50 H 1.09005 * 109.47124 * 59.99773 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1450 -0.0211 -0.4441 7 7 4.2149 -1.1805 -2.3344 8 6 5.6748 -1.0766 -2.3965 9 6 6.1772 -1.7871 -3.6269 10 8 5.3927 -2.3268 -4.3783 11 7 7.4981 -1.8229 -3.8923 12 6 7.9550 -2.4689 -5.0120 13 1 7.2566 -2.9493 -5.6810 14 6 9.3167 -2.5053 -5.2859 15 7 9.7548 -3.1249 -6.3588 16 14 10.5249 -1.6749 -4.1283 17 1 10.9604 -2.6429 -3.0896 18 1 11.7067 -1.2089 -4.8972 19 1 9.8680 -0.5129 -3.4775 20 7 2.0184 -0.6907 1.1961 21 6 2.1471 -0.0183 2.3571 22 8 1.8591 1.1585 2.4114 23 6 2.6500 -0.7286 3.5874 24 6 1.7064 -1.8829 3.9313 25 6 2.2166 -2.6037 5.1808 26 6 2.2675 -1.6203 6.3518 27 6 3.2111 -0.4661 6.0079 28 6 2.7008 0.2542 4.7588 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7516 -1.7715 -1.2057 33 1 1.6054 -0.2617 -2.1370 34 1 3.7325 -1.6557 -3.0289 35 1 5.9629 -0.0264 -2.4407 36 1 6.1098 -1.5355 -1.5086 37 1 8.1254 -1.3911 -3.2916 38 1 10.7053 -3.1500 -6.5503 39 1 2.2528 -1.6308 1.1515 40 1 3.6492 -1.1205 3.3978 41 1 0.7070 -1.4910 4.1210 42 1 1.6698 -2.5832 3.0969 43 1 3.2160 -2.9954 4.9916 44 1 1.5441 -3.4257 5.4260 45 1 2.6314 -2.1338 7.2418 46 1 1.2681 -1.2286 6.5410 47 1 4.2105 -0.8578 5.8186 48 1 3.2477 0.2342 6.8423 49 1 3.3727 1.0769 4.5140 50 1 1.7012 0.6457 4.9482 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343546485.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:28 Heat of formation + Delta-G solvation = -167.733576 kcal Electronic energy + Delta-G solvation = -29488.724248 eV Core-core repulsion = 25320.374083 eV Total energy + Delta-G solvation = -4168.350165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.45824 -40.86573 -40.01063 -38.57618 -36.75848 -36.25016 -35.26027 -33.84535 -33.18265 -31.65867 -31.37475 -30.13481 -28.32498 -26.11839 -24.91633 -23.49400 -22.55137 -21.47196 -21.40695 -21.29507 -20.60609 -20.46466 -18.59509 -18.09625 -17.52433 -17.31233 -16.87481 -16.70338 -16.52400 -16.19538 -15.84148 -15.55552 -15.37728 -15.06908 -15.00063 -14.88315 -14.54217 -14.32219 -14.13934 -13.88956 -13.83986 -13.75051 -13.26330 -13.24972 -13.07533 -13.00768 -12.83278 -12.78648 -12.46183 -12.21234 -12.04391 -12.02324 -11.97179 -11.59189 -11.53460 -11.34770 -11.00506 -10.96141 -10.66191 -10.57381 -10.34355 -10.15444 -9.98594 -8.46729 -6.08568 1.29749 1.32320 1.42217 1.63637 1.74503 1.79402 2.04186 2.18965 2.29420 2.88507 3.09582 3.62256 3.67886 3.73775 3.79108 3.81977 4.01166 4.22474 4.25175 4.28737 4.34851 4.37000 4.40657 4.46870 4.49935 4.56766 4.59782 4.63875 4.70615 4.72803 4.84259 4.96797 5.09466 5.12902 5.17447 5.24667 5.25713 5.28784 5.32703 5.36292 5.39941 5.47812 5.55005 5.61950 5.87402 6.46884 6.53837 6.63607 6.77416 7.20486 7.30188 7.35778 7.76842 8.69608 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.002165 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.093384 B =12929.794004 C =14170.184289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.157 3.843 3 H 0.058 0.942 4 C -0.140 4.140 5 C 0.508 3.492 6 O -0.573 6.573 7 N -0.710 5.710 8 C 0.119 3.881 9 C 0.445 3.555 10 O -0.613 6.613 11 N -0.580 5.580 12 C -0.330 4.330 13 H 0.065 0.935 14 C -0.008 4.008 15 N -0.925 5.925 16 Si 0.958 3.042 17 H -0.256 1.256 18 H -0.274 1.274 19 H -0.235 1.235 20 N -0.706 5.706 21 C 0.518 3.482 22 O -0.589 6.589 23 C -0.102 4.102 24 C -0.103 4.103 25 C -0.117 4.117 26 C -0.121 4.121 27 C -0.117 4.117 28 C -0.096 4.096 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.415 0.585 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.391 0.609 38 H 0.281 0.719 39 H 0.408 0.592 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.046 0.954 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.125 2.238 24.005 29.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.051 3.949 3 H 0.076 0.924 4 C -0.179 4.179 5 C 0.296 3.704 6 O -0.453 6.453 7 N -0.365 5.365 8 C -0.009 4.009 9 C 0.233 3.767 10 O -0.499 6.499 11 N -0.220 5.220 12 C -0.459 4.459 13 H 0.083 0.917 14 C -0.208 4.208 15 N -0.565 5.565 16 Si 0.778 3.222 17 H -0.180 1.180 18 H -0.199 1.199 19 H -0.159 1.159 20 N -0.357 5.357 21 C 0.305 3.695 22 O -0.470 6.470 23 C -0.124 4.124 24 C -0.141 4.141 25 C -0.154 4.154 26 C -0.158 4.158 27 C -0.154 4.154 28 C -0.135 4.135 29 H 0.061 0.939 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.151 0.849 33 H 0.153 0.847 34 H 0.253 0.747 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.227 0.773 38 H 0.091 0.909 39 H 0.244 0.756 40 H 0.118 0.882 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.065 0.935 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.242 3.053 23.980 29.693 hybrid contribution 1.191 -0.063 -0.549 1.313 sum -16.051 2.989 23.431 28.559 Atomic orbital electron populations 1.22099 0.92907 1.03543 1.02587 1.20638 0.94693 0.96389 0.83148 0.92374 1.22086 0.89365 1.05876 1.00618 1.21247 0.91440 0.77466 0.80206 1.90735 1.71253 1.43553 1.39719 1.45793 1.06237 1.56867 1.27626 1.20817 0.82949 1.01385 0.95795 1.20541 0.82520 0.84791 0.88877 1.90526 1.55672 1.51233 1.52437 1.41965 1.06738 1.49852 1.23405 1.19028 0.93009 1.32237 1.01666 0.91712 1.26052 0.98796 0.97442 0.98539 1.69775 1.16430 1.42879 1.27386 0.85457 0.78313 0.79799 0.78627 1.17999 1.19896 1.15863 1.45876 1.66526 1.14197 1.09069 1.21058 0.76192 0.86668 0.85538 1.90645 1.52292 1.18042 1.85996 1.21364 1.01637 0.97422 0.91942 1.21510 0.97812 0.95318 0.99450 1.21540 1.02095 0.97918 0.93851 1.21566 0.99633 0.96139 0.98465 1.21541 0.99520 0.97818 0.96560 1.21274 1.01340 0.96809 0.94038 0.93866 0.89929 0.90122 0.84888 0.84739 0.74693 0.88602 0.87979 0.77340 0.90929 0.75605 0.88154 0.91934 0.90044 0.91321 0.90344 0.90833 0.92117 0.91580 0.91359 0.93537 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.48 71.98 0.68 -1.43 16 2 C 0.16 2.90 2.14 45.00 0.10 2.99 16 3 H 0.06 1.55 7.39 -2.39 -0.02 1.53 16 4 C -0.14 -2.03 5.24 29.85 0.16 -1.87 16 5 C 0.51 12.25 7.69 87.66 0.67 12.92 16 6 O -0.57 -18.11 15.35 -3.03 -0.05 -18.16 16 7 N -0.71 -18.84 5.53 -466.78 -2.58 -21.42 16 8 C 0.12 3.64 6.15 85.64 0.53 4.17 16 9 C 0.45 18.62 7.85 87.66 0.69 19.31 16 10 O -0.61 -30.22 15.24 -3.08 -0.05 -30.26 16 11 N -0.58 -26.04 5.09 -306.98 -1.56 -27.60 16 12 C -0.33 -18.42 10.16 84.04 0.85 -17.57 16 13 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 14 C -0.01 -0.44 5.50 84.92 0.47 0.03 16 15 N -0.92 -53.72 13.96 21.66 0.30 -53.41 16 16 Si 0.96 37.71 27.74 68.60 1.90 39.61 16 17 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 19 H -0.24 -7.96 6.52 99.48 0.65 -7.31 16 20 N -0.71 -13.14 4.11 -442.53 -1.82 -14.96 16 21 C 0.52 12.27 7.12 87.66 0.62 12.90 16 22 O -0.59 -19.20 15.64 -3.03 -0.05 -19.25 16 23 C -0.10 -1.79 2.53 -11.54 -0.03 -1.82 16 24 C -0.10 -1.21 5.10 30.60 0.16 -1.06 16 25 C -0.12 -1.12 5.92 30.59 0.18 -0.94 16 26 C -0.12 -1.28 5.92 30.59 0.18 -1.10 16 27 C -0.12 -1.57 5.92 30.58 0.18 -1.39 16 28 C -0.10 -1.82 4.49 30.58 0.14 -1.68 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.41 10.82 7.44 -92.71 -0.69 10.13 16 35 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.39 14.83 5.76 -92.71 -0.53 14.29 16 38 H 0.28 14.93 8.31 -92.71 -0.77 14.16 16 39 H 0.41 5.53 8.03 -92.71 -0.74 4.79 16 40 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 0.81 8.14 -2.38 -0.02 0.80 16 42 H 0.08 0.71 7.57 -2.39 -0.02 0.69 16 43 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 50 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 Total: -1.00 -79.70 404.82 0.62 -79.08 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -1.06 Total: 42.90 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 5.58 Total: 23.46 kcal Atomic # 7 Polarization: -111.74 SS G_CDS: -5.66 Total: -117.40 kcal Atomic # 8 Polarization: -67.53 SS G_CDS: -0.14 Total: -67.67 kcal Atomic # 14 Polarization: 37.71 SS G_CDS: 1.90 Total: 39.61 kcal Total: -79.70 0.62 -79.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343546485.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.649 kcal (2) G-P(sol) polarization free energy of solvation -79.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds