Wall clock time and date at job start Tue Mar 31 2020 22:56:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08995 * 109.46998 * 2 1
4 4 C 1.52999 * 109.47367 * 239.99280 * 2 1 3
5 5 C 1.50702 * 109.46967 * 176.89330 * 4 2 1
6 6 H 1.08001 * 120.00108 * 359.97438 * 5 4 2
7 7 C 1.37877 * 119.99699 * 179.97438 * 5 4 2
8 8 N 1.31509 * 120.00053 * 179.97438 * 7 5 4
9 9 Si 1.86801 * 120.00232 * 0.02562 * 7 5 4
10 10 H 1.48500 * 109.47058 * 89.99666 * 9 7 5
11 11 H 1.48498 * 109.47212 * 209.99479 * 9 7 5
12 12 H 1.48497 * 109.46919 * 329.99874 * 9 7 5
13 13 N 1.46906 * 109.46600 * 119.99475 * 2 1 3
14 14 C 1.46900 * 111.00048 * 292.65803 * 13 2 1
15 15 C 1.53238 * 109.36356 * 187.24517 * 14 13 2
16 16 N 1.47093 * 108.51501 * 306.21155 * 15 14 13
17 17 C 1.34774 * 120.86021 * 231.11740 * 16 15 14
18 18 O 1.21342 * 120.00080 * 184.84237 * 17 16 15
19 19 C 1.49452 * 119.99644 * 4.84296 * 17 16 15
20 20 O 1.21352 * 120.00106 * 85.80301 * 19 17 16
21 21 N 1.34776 * 120.00206 * 265.79907 * 19 17 16
22 22 C 1.47151 * 120.98088 * 4.52542 * 21 19 17
23 23 C 1.53711 * 108.16075 * 129.43338 * 22 21 19
24 24 O 1.42956 * 109.14807 * 52.54035 * 23 22 21
25 25 C 1.42967 * 114.16455 * 297.28605 * 24 23 22
26 26 C 1.47148 * 120.98153 * 184.81250 * 21 19 17
27 27 C 1.47080 * 118.25924 * 51.13796 * 16 15 14
28 28 C 1.46894 * 111.00188 * 56.96439 * 13 2 1
29 29 H 1.09007 * 109.47426 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47271 * 300.00366 * 1 2 3
31 31 H 1.08996 * 109.46870 * 60.00876 * 1 2 3
32 32 H 1.08997 * 109.46905 * 296.89105 * 4 2 1
33 33 H 1.08997 * 109.46899 * 56.88968 * 4 2 1
34 34 H 0.97001 * 120.00571 * 180.02562 * 8 7 5
35 35 H 1.09008 * 109.48987 * 307.21554 * 14 13 2
36 36 H 1.08993 * 109.49207 * 67.26970 * 14 13 2
37 37 H 1.08999 * 109.62847 * 65.88746 * 15 14 13
38 38 H 1.08992 * 109.63122 * 186.47175 * 15 14 13
39 39 H 1.08996 * 109.68322 * 249.21485 * 22 21 19
40 40 H 1.09005 * 109.68028 * 9.76837 * 22 21 19
41 41 H 1.09002 * 109.65999 * 292.57138 * 23 22 21
42 42 H 1.09002 * 109.48369 * 172.40236 * 23 22 21
43 43 H 1.08995 * 109.51757 * 302.65436 * 25 24 23
44 44 H 1.09001 * 109.55247 * 182.53089 * 25 24 23
45 45 H 1.08991 * 109.68600 * 350.23376 * 26 21 19
46 46 H 1.09000 * 109.68291 * 110.75583 * 26 21 19
47 47 H 1.08993 * 109.62953 * 189.12243 * 27 16 15
48 48 H 1.09003 * 109.78473 * 68.63897 * 27 16 15
49 49 H 1.09000 * 109.48959 * 292.70002 * 28 13 2
50 50 H 1.08994 * 109.49887 * 52.75708 * 28 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 -1.2491
5 6 3.5451 -0.6550 -1.2881
6 1 4.0839 -0.1485 -0.5010
7 6 4.2342 -1.2409 -2.3288
8 7 5.5475 -1.1825 -2.3632
9 14 3.3022 -2.1162 -3.6907
10 1 2.9842 -1.1503 -4.7728
11 1 4.1398 -3.2138 -4.2373
12 1 2.0418 -2.6802 -3.1445
13 7 2.0196 -0.6924 1.1996
14 6 1.6969 0.0675 2.4146
15 6 2.3768 -0.5897 3.6205
16 7 1.9956 -2.0100 3.6549
17 6 1.5072 -2.5676 4.7805
18 8 1.2804 -3.7590 4.8183
19 6 1.2451 -1.7184 5.9821
20 8 0.1862 -1.1364 6.0944
21 7 2.1846 -1.5991 6.9410
22 6 3.5119 -2.2141 6.7816
23 6 4.5746 -1.1420 7.0715
24 8 4.3017 -0.5421 8.3400
25 6 3.0502 0.1461 8.4048
26 6 1.9113 -0.8553 8.1808
27 6 2.1619 -2.8055 2.4291
28 6 1.4901 -2.0608 1.2705
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5137 -0.8900
32 1 1.7229 -1.7639 -1.2215
33 1 1.6319 -0.2409 -2.1383
34 1 6.0324 -1.5943 -3.0955
35 1 2.0548 1.0917 2.3088
36 1 0.6173 0.0730 2.5642
37 1 3.4589 -0.5037 3.5225
38 1 2.0493 -0.0999 4.5374
39 1 3.6199 -3.0412 7.4832
40 1 3.6268 -2.5801 5.7613
41 1 4.5468 -0.3784 6.2941
42 1 5.5614 -1.6045 7.0922
43 1 3.0168 0.9144 7.6324
44 1 2.9395 0.6103 9.3848
45 1 0.9659 -0.3211 8.0877
46 1 1.8604 -1.5480 9.0209
47 1 1.6925 -3.7806 2.5589
48 1 3.2227 -2.9355 2.2147
49 1 0.4134 -2.0260 1.4363
50 1 1.6975 -2.5801 0.3349
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000411124070.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:56:00
Heat of formation + Delta-G solvation = -82.541035 kcal
Electronic energy + Delta-G solvation = -31590.039034 eV
Core-core repulsion = 27425.383095 eV
Total energy + Delta-G solvation = -4164.655939 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.30616 -39.77370 -38.72449 -38.01065 -35.60962 -35.25301 -32.74893 -32.00363
-31.22103 -31.05046 -28.68856 -27.97568 -26.84637 -25.16620 -24.34169 -23.54712
-22.88083 -21.97059 -20.76604 -19.51494 -18.71086 -18.08813 -17.29487 -16.88128
-16.63541 -16.45177 -15.85032 -15.57766 -15.54728 -15.32895 -15.12666 -14.82416
-14.74468 -14.25890 -14.20655 -13.99415 -13.53021 -13.17491 -13.05140 -12.94202
-12.54214 -12.34932 -12.28705 -12.13885 -11.96782 -11.89451 -11.61394 -11.58033
-11.41984 -11.15953 -10.92877 -10.84781 -10.65848 -10.64420 -10.30864 -9.78297
-9.66699 -9.62979 -9.12747 -9.11560 -8.89190 -8.49369 -7.70861 -5.97976
-3.92740 1.82448 1.88668 2.30712 2.96904 3.30522 3.34866 3.39376
3.40597 3.84732 4.21309 4.23289 4.45609 4.47990 4.58713 4.66110
4.76772 4.83804 4.96298 5.04816 5.13407 5.15590 5.25873 5.30207
5.32406 5.35274 5.42826 5.46560 5.51468 5.60730 5.71240 5.75493
5.79587 5.82763 5.89437 6.04480 6.15430 6.26792 6.38149 6.48109
6.60873 6.63722 6.65990 6.97081 7.06460 7.22948 7.42662 7.58481
7.64411 7.66794 7.85204 8.64010 9.14233 9.65023 11.15684
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016779 B = 0.002976 C = 0.002839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1668.365015 B = 9407.042395 C = 9859.943904
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.098 3.902
3 H 0.078 0.922
4 C -0.008 4.008
5 C -0.493 4.493
6 H 0.080 0.920
7 C 0.063 3.937
8 N -0.906 5.906
9 Si 0.871 3.129
10 H -0.280 1.280
11 H -0.290 1.290
12 H -0.268 1.268
13 N -0.506 5.506
14 C 0.039 3.961
15 C 0.111 3.889
16 N -0.589 5.589
17 C 0.514 3.486
18 O -0.517 6.517
19 C 0.522 3.478
20 O -0.511 6.511
21 N -0.603 5.603
22 C 0.071 3.929
23 C 0.049 3.951
24 O -0.377 6.377
25 C 0.048 3.952
26 C 0.075 3.925
27 C 0.115 3.885
28 C 0.041 3.959
29 H 0.052 0.948
30 H 0.044 0.956
31 H 0.058 0.942
32 H 0.017 0.983
33 H 0.015 0.985
34 H 0.260 0.740
35 H 0.087 0.913
36 H 0.035 0.965
37 H 0.089 0.911
38 H 0.075 0.925
39 H 0.087 0.913
40 H 0.095 0.905
41 H 0.063 0.937
42 H 0.113 0.887
43 H 0.060 0.940
44 H 0.110 0.890
45 H 0.105 0.895
46 H 0.081 0.919
47 H 0.092 0.908
48 H 0.090 0.910
49 H 0.032 0.968
50 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.931 1.789 20.154 20.825
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.247 4.247
2 C -0.010 4.010
3 H 0.096 0.904
4 C -0.046 4.046
5 C -0.531 4.531
6 H 0.098 0.902
7 C -0.137 4.137
8 N -0.546 5.546
9 Si 0.699 3.301
10 H -0.206 1.206
11 H -0.216 1.216
12 H -0.193 1.193
13 N -0.230 5.230
14 C -0.090 4.090
15 C -0.012 4.012
16 N -0.323 5.323
17 C 0.295 3.705
18 O -0.393 6.393
19 C 0.305 3.695
20 O -0.385 6.385
21 N -0.340 5.340
22 C -0.052 4.052
23 C -0.029 4.029
24 O -0.295 6.295
25 C -0.029 4.029
26 C -0.047 4.047
27 C -0.006 4.006
28 C -0.088 4.088
29 H 0.071 0.929
30 H 0.063 0.937
31 H 0.077 0.923
32 H 0.035 0.965
33 H 0.033 0.967
34 H 0.070 0.930
35 H 0.105 0.895
36 H 0.053 0.947
37 H 0.107 0.893
38 H 0.093 0.907
39 H 0.105 0.895
40 H 0.113 0.887
41 H 0.081 0.919
42 H 0.131 0.869
43 H 0.078 0.922
44 H 0.128 0.872
45 H 0.123 0.877
46 H 0.100 0.900
47 H 0.111 0.889
48 H 0.108 0.892
49 H 0.050 0.950
50 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -4.847 1.362 20.229 20.846
hybrid contribution -1.520 -0.451 -1.038 1.895
sum -6.367 0.911 19.191 20.240
Atomic orbital electron populations
1.22568 0.99501 1.01483 1.01148 1.21699 0.89985 0.98548 0.90790
0.90369 1.19718 0.98138 0.95224 0.91477 1.21018 0.88972 1.34688
1.08403 0.90201 1.25000 0.94650 0.96221 0.97781 1.69897 1.06247
1.45923 1.32520 0.86932 0.80253 0.79872 0.83034 1.20597 1.21589
1.19334 1.62043 1.58844 1.01131 1.00947 1.22422 0.97870 0.98281
0.90434 1.21985 1.01201 0.79315 0.98690 1.48322 1.60935 1.12003
1.11063 1.20071 0.78324 0.87968 0.84095 1.90806 1.51567 1.13897
1.82989 1.20423 0.84411 0.80617 0.84004 1.90802 1.24703 1.44661
1.78303 1.48172 1.13719 1.53446 1.18661 1.22653 0.81599 0.96940
1.04031 1.23087 0.98489 0.94996 0.86294 1.87990 1.37194 1.71262
1.33073 1.23007 0.82971 0.93474 1.03461 1.22432 1.00770 0.95719
0.85814 1.21971 1.02815 0.94539 0.81284 1.22504 0.95967 0.91120
0.99188 0.92897 0.93705 0.92331 0.96478 0.96689 0.93005 0.89458
0.94682 0.89299 0.90682 0.89524 0.88715 0.91882 0.86923 0.92177
0.87226 0.87702 0.90035 0.88928 0.89204 0.95039 0.87871
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.89 8.49 37.16 0.32 -2.57 16
2 C 0.10 1.76 2.29 -67.71 -0.16 1.60 16
3 H 0.08 1.44 8.02 -51.93 -0.42 1.02 16
4 C -0.01 -0.18 3.36 -27.88 -0.09 -0.27 16
5 C -0.49 -13.06 9.34 -34.44 -0.32 -13.38 16
6 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16
7 C 0.06 1.77 5.47 -17.82 -0.10 1.67 16
8 N -0.91 -27.06 13.96 55.43 0.77 -26.29 16
9 Si 0.87 21.03 27.47 -169.99 -4.67 16.36 16
10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16
13 N -0.51 -8.49 4.26 -226.35 -0.96 -9.46 16
14 C 0.04 0.54 5.19 -3.70 -0.02 0.52 16
15 C 0.11 1.34 6.52 -3.60 -0.02 1.32 16
16 N -0.59 -8.04 3.01 -172.97 -0.52 -8.56 16
17 C 0.51 7.53 5.56 -11.59 -0.06 7.46 16
18 O -0.52 -8.94 16.57 5.50 0.09 -8.85 16
19 C 0.52 7.03 5.52 -11.58 -0.06 6.97 16
20 O -0.51 -8.13 16.57 5.50 0.09 -8.04 16
21 N -0.60 -6.14 3.01 -172.53 -0.52 -6.66 16
22 C 0.07 0.59 6.55 -3.32 -0.02 0.57 16
23 C 0.05 0.35 7.00 37.53 0.26 0.61 16
24 O -0.38 -3.12 10.74 -35.23 -0.38 -3.49 16
25 C 0.05 0.32 6.99 37.31 0.26 0.58 16
26 C 0.07 0.59 6.65 -3.53 -0.02 0.57 16
27 C 0.12 1.68 6.58 -3.60 -0.02 1.66 16
28 C 0.04 0.65 4.72 -3.70 -0.02 0.64 16
29 H 0.05 0.82 6.52 -51.93 -0.34 0.48 16
30 H 0.04 0.63 6.76 -51.93 -0.35 0.28 16
31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
32 H 0.02 0.38 5.24 -51.93 -0.27 0.11 16
33 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16
34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16
35 H 0.09 1.12 8.02 -51.92 -0.42 0.70 16
36 H 0.04 0.50 6.87 -51.93 -0.36 0.14 16
37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16
38 H 0.07 0.83 6.37 -51.93 -0.33 0.49 16
39 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16
40 H 0.09 0.85 6.47 -51.93 -0.34 0.52 16
41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
42 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16
43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
44 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16
45 H 0.10 0.88 7.06 -51.93 -0.37 0.52 16
46 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
47 H 0.09 1.34 7.10 -51.93 -0.37 0.97 16
48 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16
49 H 0.03 0.50 6.69 -51.93 -0.35 0.15 16
50 H 0.10 1.82 5.99 -51.93 -0.31 1.51 16
LS Contribution 384.83 15.07 5.80 5.80
Total: -1.00 -33.34 384.83 -8.38 -41.72
By element:
Atomic # 1 Polarization: 7.54 SS G_CDS: -8.00 Total: -0.46 kcal
Atomic # 6 Polarization: 8.02 SS G_CDS: -0.09 Total: 7.94 kcal
Atomic # 7 Polarization: -49.74 SS G_CDS: -1.23 Total: -50.97 kcal
Atomic # 8 Polarization: -20.19 SS G_CDS: -0.20 Total: -20.38 kcal
Atomic # 14 Polarization: 21.03 SS G_CDS: -4.67 Total: 16.36 kcal
Total LS contribution 5.80 Total: 5.80 kcal
Total: -33.34 -8.38 -41.72 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000411124070.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -40.824 kcal
(2) G-P(sol) polarization free energy of solvation -33.337 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.161 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.717 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.541 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds