Wall clock time and date at job start Tue Mar 31 2020 22:55:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.08995 * 109.46998 * 2 1
4 4 C 1.52999 * 109.47367 * 239.99280 * 2 1 3
5 5 C 1.50702 * 109.46967 * 176.89330 * 4 2 1
6 6 H 1.08001 * 120.00108 * 359.97438 * 5 4 2
7 7 C 1.37877 * 119.99699 * 179.97438 * 5 4 2
8 8 N 1.31509 * 120.00053 * 179.97438 * 7 5 4
9 9 Si 1.86801 * 120.00232 * 0.02562 * 7 5 4
10 10 H 1.48500 * 109.47058 * 89.99666 * 9 7 5
11 11 H 1.48498 * 109.47212 * 209.99479 * 9 7 5
12 12 H 1.48497 * 109.46919 * 329.99874 * 9 7 5
13 13 N 1.46906 * 109.46600 * 119.99475 * 2 1 3
14 14 C 1.46900 * 111.00048 * 292.65803 * 13 2 1
15 15 C 1.53238 * 109.36356 * 187.24517 * 14 13 2
16 16 N 1.47093 * 108.51501 * 306.21155 * 15 14 13
17 17 C 1.34774 * 120.86021 * 231.11740 * 16 15 14
18 18 O 1.21342 * 120.00080 * 184.84237 * 17 16 15
19 19 C 1.49452 * 119.99644 * 4.84296 * 17 16 15
20 20 O 1.21352 * 120.00106 * 85.80301 * 19 17 16
21 21 N 1.34776 * 120.00206 * 265.79907 * 19 17 16
22 22 C 1.47151 * 120.98088 * 4.52542 * 21 19 17
23 23 C 1.53711 * 108.16075 * 129.43338 * 22 21 19
24 24 O 1.42956 * 109.14807 * 52.54035 * 23 22 21
25 25 C 1.42967 * 114.16455 * 297.28605 * 24 23 22
26 26 C 1.47148 * 120.98153 * 184.81250 * 21 19 17
27 27 C 1.47080 * 118.25924 * 51.13796 * 16 15 14
28 28 C 1.46894 * 111.00188 * 56.96439 * 13 2 1
29 29 H 1.09007 * 109.47426 * 180.02562 * 1 2 3
30 30 H 1.08999 * 109.47271 * 300.00366 * 1 2 3
31 31 H 1.08996 * 109.46870 * 60.00876 * 1 2 3
32 32 H 1.08997 * 109.46905 * 296.89105 * 4 2 1
33 33 H 1.08997 * 109.46899 * 56.88968 * 4 2 1
34 34 H 0.97001 * 120.00571 * 180.02562 * 8 7 5
35 35 H 1.09008 * 109.48987 * 307.21554 * 14 13 2
36 36 H 1.08993 * 109.49207 * 67.26970 * 14 13 2
37 37 H 1.08999 * 109.62847 * 65.88746 * 15 14 13
38 38 H 1.08992 * 109.63122 * 186.47175 * 15 14 13
39 39 H 1.08996 * 109.68322 * 249.21485 * 22 21 19
40 40 H 1.09005 * 109.68028 * 9.76837 * 22 21 19
41 41 H 1.09002 * 109.65999 * 292.57138 * 23 22 21
42 42 H 1.09002 * 109.48369 * 172.40236 * 23 22 21
43 43 H 1.08995 * 109.51757 * 302.65436 * 25 24 23
44 44 H 1.09001 * 109.55247 * 182.53089 * 25 24 23
45 45 H 1.08991 * 109.68600 * 350.23376 * 26 21 19
46 46 H 1.09000 * 109.68291 * 110.75583 * 26 21 19
47 47 H 1.08993 * 109.62953 * 189.12243 * 27 16 15
48 48 H 1.09003 * 109.78473 * 68.63897 * 27 16 15
49 49 H 1.09000 * 109.48959 * 292.70002 * 28 13 2
50 50 H 1.08994 * 109.49887 * 52.75708 * 28 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7214 -1.2491
5 6 3.5451 -0.6550 -1.2881
6 1 4.0839 -0.1485 -0.5010
7 6 4.2342 -1.2409 -2.3288
8 7 5.5475 -1.1825 -2.3632
9 14 3.3022 -2.1162 -3.6907
10 1 2.9842 -1.1503 -4.7728
11 1 4.1398 -3.2138 -4.2373
12 1 2.0418 -2.6802 -3.1445
13 7 2.0196 -0.6924 1.1996
14 6 1.6969 0.0675 2.4146
15 6 2.3768 -0.5897 3.6205
16 7 1.9956 -2.0100 3.6549
17 6 1.5072 -2.5676 4.7805
18 8 1.2804 -3.7590 4.8183
19 6 1.2451 -1.7184 5.9821
20 8 0.1862 -1.1364 6.0944
21 7 2.1846 -1.5991 6.9410
22 6 3.5119 -2.2141 6.7816
23 6 4.5746 -1.1420 7.0715
24 8 4.3017 -0.5421 8.3400
25 6 3.0502 0.1461 8.4048
26 6 1.9113 -0.8553 8.1808
27 6 2.1619 -2.8055 2.4291
28 6 1.4901 -2.0608 1.2705
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5137 -0.8900
32 1 1.7229 -1.7639 -1.2215
33 1 1.6319 -0.2409 -2.1383
34 1 6.0324 -1.5943 -3.0955
35 1 2.0548 1.0917 2.3088
36 1 0.6173 0.0730 2.5642
37 1 3.4589 -0.5037 3.5225
38 1 2.0493 -0.0999 4.5374
39 1 3.6199 -3.0412 7.4832
40 1 3.6268 -2.5801 5.7613
41 1 4.5468 -0.3784 6.2941
42 1 5.5614 -1.6045 7.0922
43 1 3.0168 0.9144 7.6324
44 1 2.9395 0.6103 9.3848
45 1 0.9659 -0.3211 8.0877
46 1 1.8604 -1.5480 9.0209
47 1 1.6925 -3.7806 2.5589
48 1 3.2227 -2.9355 2.2147
49 1 0.4134 -2.0260 1.4363
50 1 1.6975 -2.5801 0.3349
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000411124070.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:55:59
Heat of formation + Delta-G solvation = -107.239330 kcal
Electronic energy + Delta-G solvation = -31591.110033 eV
Core-core repulsion = 27425.383095 eV
Total energy + Delta-G solvation = -4165.726937 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.33452 -40.75587 -39.76217 -39.11231 -36.92218 -36.06270 -34.69256 -32.75326
-32.56830 -32.26935 -29.74400 -29.44254 -27.96842 -26.10593 -25.15525 -24.94696
-24.24344 -23.01803 -21.89209 -20.73187 -19.77419 -19.15646 -18.72091 -18.30112
-17.89373 -17.15723 -16.84574 -16.60165 -16.47240 -16.33821 -16.11989 -16.06259
-15.72841 -15.70108 -15.43258 -15.18312 -14.71019 -14.48093 -14.31620 -14.19799
-13.82816 -13.61427 -13.49713 -13.17019 -13.15351 -12.98691 -12.81179 -12.73668
-12.43876 -12.40621 -12.33895 -12.04976 -11.84531 -11.77142 -11.57775 -11.33654
-11.31768 -11.08640 -10.81514 -10.63022 -10.08288 -9.89161 -9.00268 -8.13082
-6.10933 0.79056 0.83761 1.22602 1.39299 1.42182 1.50910 1.99215
2.44842 2.80964 2.85326 2.97493 3.24653 3.60743 3.74261 3.80968
3.90728 3.97046 4.03005 4.05550 4.16360 4.18574 4.22596 4.23554
4.35286 4.40556 4.49345 4.52010 4.57926 4.61334 4.70018 4.72316
4.79783 4.82082 4.85938 4.93098 4.97636 5.06978 5.09029 5.15775
5.20216 5.26452 5.56381 5.74940 5.77885 5.90381 6.06254 6.26630
6.30490 6.44403 6.51423 6.54367 6.97877 7.49830 9.03594
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.016779 B = 0.002976 C = 0.002839
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1668.365015 B = 9407.042395 C = 9859.943904
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.101 3.899
3 H 0.072 0.928
4 C -0.007 4.007
5 C -0.483 4.483
6 H 0.044 0.956
7 C 0.003 3.997
8 N -0.955 5.955
9 Si 0.934 3.066
10 H -0.274 1.274
11 H -0.293 1.293
12 H -0.250 1.250
13 N -0.525 5.525
14 C 0.041 3.959
15 C 0.116 3.884
16 N -0.584 5.584
17 C 0.514 3.486
18 O -0.548 6.548
19 C 0.524 3.476
20 O -0.541 6.541
21 N -0.594 5.594
22 C 0.068 3.932
23 C 0.052 3.948
24 O -0.389 6.389
25 C 0.051 3.949
26 C 0.071 3.929
27 C 0.121 3.879
28 C 0.047 3.953
29 H 0.051 0.949
30 H 0.060 0.940
31 H 0.066 0.934
32 H 0.019 0.981
33 H 0.018 0.982
34 H 0.259 0.741
35 H 0.099 0.901
36 H 0.036 0.964
37 H 0.097 0.903
38 H 0.091 0.909
39 H 0.096 0.904
40 H 0.087 0.913
41 H 0.065 0.935
42 H 0.130 0.870
43 H 0.061 0.939
44 H 0.135 0.865
45 H 0.100 0.900
46 H 0.093 0.907
47 H 0.092 0.908
48 H 0.085 0.915
49 H 0.036 0.964
50 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.939 2.269 21.259 22.190
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.236 4.236
2 C -0.007 4.007
3 H 0.090 0.910
4 C -0.044 4.044
5 C -0.521 4.521
6 H 0.063 0.937
7 C -0.193 4.193
8 N -0.597 5.597
9 Si 0.760 3.240
10 H -0.200 1.200
11 H -0.220 1.220
12 H -0.174 1.174
13 N -0.249 5.249
14 C -0.087 4.087
15 C -0.007 4.007
16 N -0.318 5.318
17 C 0.297 3.703
18 O -0.426 6.426
19 C 0.306 3.694
20 O -0.418 6.418
21 N -0.329 5.329
22 C -0.055 4.055
23 C -0.025 4.025
24 O -0.307 6.307
25 C -0.026 4.026
26 C -0.050 4.050
27 C -0.001 4.001
28 C -0.082 4.082
29 H 0.070 0.930
30 H 0.079 0.921
31 H 0.085 0.915
32 H 0.038 0.962
33 H 0.036 0.964
34 H 0.068 0.932
35 H 0.117 0.883
36 H 0.054 0.946
37 H 0.115 0.885
38 H 0.109 0.891
39 H 0.114 0.886
40 H 0.105 0.895
41 H 0.083 0.917
42 H 0.148 0.852
43 H 0.080 0.920
44 H 0.152 0.848
45 H 0.119 0.881
46 H 0.111 0.889
47 H 0.111 0.889
48 H 0.103 0.897
49 H 0.054 0.946
50 H 0.103 0.897
Dipole moment (debyes) X Y Z Total
from point charges -5.846 1.866 21.365 22.229
hybrid contribution -1.132 -0.554 -1.283 1.799
sum -6.978 1.312 20.082 21.301
Atomic orbital electron populations
1.22430 0.97022 1.01809 1.02366 1.21504 0.91861 0.97595 0.89725
0.90952 1.19667 0.94996 0.95954 0.93789 1.21244 0.91328 1.32817
1.06727 0.93723 1.25817 0.95343 0.97518 1.00578 1.70053 1.08098
1.47895 1.33693 0.85909 0.79477 0.78636 0.80022 1.19970 1.21958
1.17358 1.61966 1.59572 1.01659 1.01734 1.22471 0.98108 0.98633
0.89497 1.22051 1.01578 0.78310 0.98713 1.48332 1.60399 1.12497
1.10532 1.20345 0.77616 0.87723 0.84590 1.90783 1.52978 1.15289
1.83570 1.20153 0.84581 0.80460 0.84164 1.90789 1.25905 1.46147
1.78943 1.48291 1.13606 1.52555 1.18464 1.22818 0.80987 0.97761
1.03889 1.23154 0.98690 0.94610 0.86083 1.87986 1.37805 1.71386
1.33502 1.23122 0.81689 0.92810 1.04963 1.22656 1.01335 0.96132
0.84861 1.21820 1.02339 0.94556 0.81354 1.22395 0.96266 0.90795
0.98744 0.92971 0.92127 0.91504 0.96249 0.96384 0.93191 0.88292
0.94617 0.88466 0.89100 0.88630 0.89509 0.91671 0.85176 0.92032
0.84777 0.88131 0.88866 0.88935 0.89673 0.94605 0.89749
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -5.05 8.49 71.98 0.61 -4.43 16
2 C 0.10 3.53 2.29 44.91 0.10 3.63 16
3 H 0.07 2.60 8.02 -2.39 -0.02 2.58 16
4 C -0.01 -0.28 3.36 29.85 0.10 -0.18 16
5 C -0.48 -25.85 9.34 25.60 0.24 -25.61 16
6 H 0.04 2.66 7.99 -2.91 -0.02 2.63 16
7 C 0.00 0.15 5.47 84.66 0.46 0.61 16
8 N -0.95 -58.39 13.96 21.45 0.30 -58.09 16
9 Si 0.93 43.28 27.47 68.60 1.88 45.16 16
10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16
11 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16
12 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16
13 N -0.53 -17.20 4.26 -870.03 -3.71 -20.91 16
14 C 0.04 1.08 5.19 86.38 0.45 1.53 16
15 C 0.12 2.64 6.52 86.35 0.56 3.20 16
16 N -0.58 -15.51 3.01 -819.51 -2.47 -17.97 16
17 C 0.51 14.80 5.56 87.27 0.49 15.28 16
18 O -0.55 -18.93 16.57 -3.22 -0.05 -18.98 16
19 C 0.52 13.61 5.52 87.27 0.48 14.09 16
20 O -0.54 -16.80 16.57 -3.25 -0.05 -16.85 16
21 N -0.59 -11.24 3.01 -818.13 -2.47 -13.70 16
22 C 0.07 1.02 6.55 86.49 0.57 1.59 16
23 C 0.05 0.62 7.00 72.22 0.51 1.13 16
24 O -0.39 -5.45 10.74 -148.98 -1.60 -7.05 16
25 C 0.05 0.54 6.99 72.08 0.50 1.05 16
26 C 0.07 1.00 6.65 86.36 0.57 1.57 16
27 C 0.12 3.50 6.58 86.35 0.57 4.07 16
28 C 0.05 1.47 4.72 86.38 0.41 1.88 16
29 H 0.05 1.49 6.52 -2.38 -0.02 1.48 16
30 H 0.06 1.54 6.76 -2.39 -0.02 1.53 16
31 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
32 H 0.02 0.84 5.24 -2.39 -0.01 0.82 16
33 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16
34 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16
35 H 0.10 2.35 8.02 -2.38 -0.02 2.33 16
36 H 0.04 0.94 6.87 -2.39 -0.02 0.92 16
37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16
38 H 0.09 1.83 6.37 -2.39 -0.02 1.81 16
39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16
40 H 0.09 1.48 6.47 -2.38 -0.02 1.46 16
41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16
42 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16
43 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
44 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16
45 H 0.10 1.54 7.06 -2.39 -0.02 1.53 16
46 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16
47 H 0.09 2.69 7.10 -2.39 -0.02 2.67 16
48 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16
49 H 0.04 1.09 6.69 -2.39 -0.02 1.08 16
50 H 0.08 2.97 5.99 -2.39 -0.01 2.95 16
Total: -1.00 -72.27 384.83 -0.66 -72.92
By element:
Atomic # 1 Polarization: 15.19 SS G_CDS: 0.88 Total: 16.07 kcal
Atomic # 6 Polarization: 12.77 SS G_CDS: 6.62 Total: 19.39 kcal
Atomic # 7 Polarization: -102.33 SS G_CDS: -8.34 Total: -110.67 kcal
Atomic # 8 Polarization: -41.17 SS G_CDS: -1.71 Total: -42.88 kcal
Atomic # 14 Polarization: 43.28 SS G_CDS: 1.88 Total: 45.16 kcal
Total: -72.27 -0.66 -72.92 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000411124070.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -34.315 kcal
(2) G-P(sol) polarization free energy of solvation -72.267 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.582 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal
(6) G-S(sol) free energy of system = (1) + (5) -107.239 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds