Wall clock time and date at job start Tue Mar 31 2020 22:56:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08998 * 109.47363 * 2 1
4 4 C 1.52997 * 109.47459 * 120.00154 * 2 1 3
5 5 C 1.50692 * 109.47425 * 183.14070 * 4 2 1
6 6 H 1.07995 * 120.00448 * 4.99605 * 5 4 2
7 7 C 1.37883 * 120.00056 * 184.99455 * 5 4 2
8 8 N 1.31515 * 120.00026 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00034 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.47014 * 60.00509 * 9 7 5
11 11 H 1.48499 * 109.47230 * 179.97438 * 9 7 5
12 12 H 1.48496 * 109.47364 * 300.00764 * 9 7 5
13 13 N 1.46909 * 109.47174 * 239.99847 * 2 1 3
14 14 C 1.46895 * 110.99748 * 71.29023 * 13 2 1
15 15 C 1.53240 * 109.33804 * 172.74458 * 14 13 2
16 16 N 1.47081 * 108.51928 * 53.83356 * 15 14 13
17 17 C 1.34781 * 120.88211 * 128.79334 * 16 15 14
18 18 O 1.21349 * 119.99854 * 184.75441 * 17 16 15
19 19 C 1.49452 * 119.99861 * 4.75036 * 17 16 15
20 20 O 1.21355 * 119.99555 * 274.99553 * 19 17 16
21 21 N 1.34767 * 120.00117 * 94.99866 * 19 17 16
22 22 C 1.47151 * 120.98375 * 184.51728 * 21 19 17
23 23 C 1.53715 * 108.16385 * 129.42918 * 22 21 19
24 24 O 1.42966 * 109.14727 * 52.53656 * 23 22 21
25 25 C 1.42962 * 114.16760 * 297.28896 * 24 23 22
26 26 C 1.47158 * 120.98369 * 4.79496 * 21 19 17
27 27 C 1.47083 * 118.23655 * 308.81540 * 16 15 14
28 28 C 1.46900 * 110.99814 * 306.99070 * 13 2 1
29 29 H 1.09004 * 109.47281 * 299.99714 * 1 2 3
30 30 H 1.08995 * 109.47446 * 60.00458 * 1 2 3
31 31 H 1.09007 * 109.47338 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46995 * 303.14235 * 4 2 1
33 33 H 1.09000 * 109.47302 * 63.13611 * 4 2 1
34 34 H 0.96997 * 119.99837 * 179.97438 * 8 7 5
35 35 H 1.08997 * 109.49593 * 292.70554 * 14 13 2
36 36 H 1.09004 * 109.49412 * 52.79330 * 14 13 2
37 37 H 1.09003 * 109.63196 * 294.12291 * 15 14 13
38 38 H 1.09004 * 109.62879 * 173.53781 * 15 14 13
39 39 H 1.08997 * 109.67930 * 249.20557 * 22 21 19
40 40 H 1.08993 * 109.68085 * 9.76092 * 22 21 19
41 41 H 1.08998 * 109.65624 * 292.57048 * 23 22 21
42 42 H 1.08992 * 109.48737 * 172.39611 * 23 22 21
43 43 H 1.09001 * 109.51248 * 302.65716 * 25 24 23
44 44 H 1.08997 * 109.55805 * 182.52636 * 25 24 23
45 45 H 1.09009 * 109.67529 * 350.24061 * 26 21 19
46 46 H 1.08990 * 109.68005 * 110.75041 * 26 21 19
47 47 H 1.08997 * 109.62487 * 291.47089 * 27 16 15
48 48 H 1.09001 * 109.78704 * 170.98881 * 27 16 15
49 49 H 1.08997 * 109.49648 * 307.21356 * 28 13 2
50 50 H 1.09002 * 109.49578 * 67.26586 * 28 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5449 -0.6542 1.2887
6 1 4.0796 -0.0800 0.5466
7 6 4.2394 -1.3260 2.2724
8 7 3.5884 -2.0257 3.1758
9 14 6.1049 -1.2434 2.3209
10 1 6.5339 0.1693 2.4802
11 1 6.6062 -2.0444 3.4665
12 1 6.6577 -1.7889 1.0552
13 7 2.0197 -0.6926 -1.1995
14 6 1.7804 0.1109 -2.4057
15 6 2.4626 -0.5574 -3.6041
16 7 2.0036 -1.9524 -3.6849
17 6 1.5212 -2.4563 -4.8382
18 8 1.0671 -3.5813 -4.8657
19 6 1.5456 -1.6295 -6.0829
20 8 0.6454 -0.8479 -6.3098
21 7 2.5671 -1.7520 -6.9533
22 6 2.6643 -0.8802 -8.1348
23 6 4.0788 -0.2799 -8.1724
24 8 5.0388 -1.3355 -8.0822
25 6 4.9805 -2.0769 -6.8613
26 6 3.6152 -2.7655 -6.7536
27 6 2.0844 -2.7828 -2.4736
28 6 1.4172 -2.0269 -1.3198
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 1.6314 -0.2410 2.1383
33 1 1.7234 -1.7639 1.2215
34 1 4.0770 -2.4986 3.8676
35 1 0.7083 0.1804 -2.5897
36 1 2.1912 1.1106 -2.2644
37 1 3.5440 -0.5350 -3.4693
38 1 2.1939 -0.0300 -4.5195
39 1 2.4863 -1.4644 -9.0377
40 1 1.9268 -0.0809 -8.0628
41 1 4.2094 0.4036 -7.3334
42 1 4.2195 0.2611 -9.1080
43 1 5.1144 -1.4000 -6.0175
44 1 5.7692 -2.8292 -6.8532
45 1 3.5075 -3.2152 -5.7665
46 1 3.5308 -3.5366 -7.5193
47 1 3.1294 -2.9744 -2.2301
48 1 1.5679 -3.7283 -2.6392
49 1 1.5645 -2.5776 -0.3908
50 1 0.3500 -1.9276 -1.5184
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000411124071.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:56:02
Heat of formation + Delta-G solvation = -87.210087 kcal
Electronic energy + Delta-G solvation = -31562.475716 eV
Core-core repulsion = 27397.617312 eV
Total energy + Delta-G solvation = -4164.858404 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.29178 -39.76051 -38.67980 -37.98431 -35.53705 -35.24599 -32.80168 -31.99069
-31.16575 -30.87419 -28.67465 -27.41005 -26.79218 -25.13928 -24.35087 -23.54893
-23.03554 -22.01707 -20.78934 -19.51630 -18.70850 -18.02989 -17.29530 -16.84796
-16.48386 -16.21618 -15.86759 -15.55434 -15.51476 -15.22519 -15.14365 -14.82875
-14.70231 -14.28840 -14.15265 -14.03550 -13.52520 -13.14786 -13.10071 -12.90773
-12.34310 -12.32682 -12.10636 -11.94526 -11.84547 -11.76516 -11.60293 -11.49540
-11.22031 -11.16764 -10.88635 -10.69664 -10.66104 -10.62730 -10.44894 -10.04781
-9.70708 -9.30636 -9.13089 -9.06363 -8.83841 -8.31314 -7.63434 -5.94086
-3.92366 1.79793 1.87697 2.34583 2.99647 3.33874 3.35607 3.40715
3.42704 3.84569 4.20914 4.31419 4.43977 4.50974 4.58166 4.65936
4.76205 4.88360 4.96135 5.09490 5.12166 5.20030 5.25476 5.29227
5.35972 5.42394 5.43114 5.51032 5.59393 5.70894 5.74652 5.79679
5.87263 5.91260 5.96657 6.10508 6.22305 6.33940 6.49578 6.59763
6.61392 6.63854 6.88788 7.04031 7.41466 7.42886 7.53128 7.66637
7.77446 7.89532 8.05670 8.50633 9.12569 9.69319 11.17749
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.013226 B = 0.003248 C = 0.002901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2116.456552 B = 8618.163101 C = 9649.279773
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.088 3.912
3 H 0.071 0.929
4 C 0.030 3.970
5 C -0.491 4.491
6 H 0.059 0.941
7 C 0.052 3.948
8 N -0.903 5.903
9 Si 0.890 3.110
10 H -0.280 1.280
11 H -0.291 1.291
12 H -0.278 1.278
13 N -0.507 5.507
14 C 0.039 3.961
15 C 0.111 3.889
16 N -0.588 5.588
17 C 0.514 3.486
18 O -0.519 6.519
19 C 0.523 3.477
20 O -0.512 6.512
21 N -0.603 5.603
22 C 0.076 3.924
23 C 0.048 3.952
24 O -0.377 6.377
25 C 0.048 3.952
26 C 0.072 3.928
27 C 0.115 3.885
28 C 0.042 3.958
29 H 0.057 0.943
30 H 0.039 0.961
31 H 0.053 0.947
32 H 0.016 0.984
33 H 0.023 0.977
34 H 0.258 0.742
35 H 0.034 0.966
36 H 0.086 0.914
37 H 0.085 0.915
38 H 0.077 0.923
39 H 0.082 0.918
40 H 0.104 0.896
41 H 0.060 0.940
42 H 0.110 0.890
43 H 0.062 0.938
44 H 0.112 0.888
45 H 0.095 0.905
46 H 0.087 0.913
47 H 0.087 0.913
48 H 0.093 0.907
49 H 0.105 0.895
50 H 0.032 0.968
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.471 2.056 -21.240 21.344
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C -0.020 4.020
3 H 0.089 0.911
4 C -0.007 4.007
5 C -0.529 4.529
6 H 0.077 0.923
7 C -0.148 4.148
8 N -0.544 5.544
9 Si 0.718 3.282
10 H -0.206 1.206
11 H -0.217 1.217
12 H -0.204 1.204
13 N -0.231 5.231
14 C -0.090 4.090
15 C -0.012 4.012
16 N -0.323 5.323
17 C 0.296 3.704
18 O -0.394 6.394
19 C 0.306 3.694
20 O -0.385 6.385
21 N -0.339 5.339
22 C -0.046 4.046
23 C -0.029 4.029
24 O -0.295 6.295
25 C -0.029 4.029
26 C -0.051 4.051
27 C -0.007 4.007
28 C -0.086 4.086
29 H 0.076 0.924
30 H 0.058 0.942
31 H 0.072 0.928
32 H 0.034 0.966
33 H 0.041 0.959
34 H 0.068 0.932
35 H 0.052 0.948
36 H 0.104 0.896
37 H 0.103 0.897
38 H 0.095 0.905
39 H 0.100 0.900
40 H 0.123 0.877
41 H 0.079 0.921
42 H 0.128 0.872
43 H 0.081 0.919
44 H 0.130 0.870
45 H 0.113 0.887
46 H 0.105 0.895
47 H 0.105 0.895
48 H 0.112 0.888
49 H 0.123 0.877
50 H 0.050 0.950
Dipole moment (debyes) X Y Z Total
from point charges 0.398 1.666 -21.296 21.365
hybrid contribution -0.106 0.150 0.254 0.313
sum 0.292 1.816 -21.043 21.123
Atomic orbital electron populations
1.22527 0.99544 1.01478 1.00771 1.21937 0.90170 0.98280 0.91583
0.91102 1.19195 0.96410 0.95471 0.89593 1.21073 0.91400 1.29388
1.11059 0.92306 1.24993 0.97969 0.95849 0.95948 1.69945 1.35293
1.32931 1.16194 0.86702 0.86409 0.77817 0.77232 1.20553 1.21674
1.20420 1.62101 1.58127 1.01720 1.01164 1.22418 0.98216 0.97729
0.90647 1.21983 1.00290 0.80034 0.98910 1.48297 1.60426 1.13626
1.09930 1.20053 0.79106 0.86888 0.84388 1.90808 1.45164 1.18385
1.85070 1.20420 0.82120 0.82396 0.84501 1.90806 1.35213 1.36313
1.76213 1.48132 1.24497 1.36164 1.25144 1.22515 0.99049 0.95460
0.87591 1.23096 0.86904 0.89469 1.03473 1.87988 1.56269 1.46949
1.38340 1.23012 0.96284 0.96092 0.87546 1.22555 0.87481 0.90978
1.04091 1.21988 1.02851 0.93991 0.81820 1.22483 0.95442 0.91669
0.99047 0.92388 0.94208 0.92786 0.96570 0.95925 0.93199 0.94799
0.89583 0.89678 0.90499 0.90022 0.87741 0.92135 0.87218 0.91939
0.87008 0.88700 0.89522 0.89466 0.88843 0.87713 0.95007
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.05 8.44 37.16 0.31 -2.73 16
2 C 0.09 1.66 2.27 -67.71 -0.15 1.50 16
3 H 0.07 1.35 7.94 -51.93 -0.41 0.93 16
4 C 0.03 0.72 4.37 -27.89 -0.12 0.60 16
5 C -0.49 -12.93 8.79 -34.44 -0.30 -13.23 16
6 H 0.06 1.53 7.75 -52.49 -0.41 1.13 16
7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16
8 N -0.90 -26.22 13.29 55.43 0.74 -25.48 16
9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16
10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16
13 N -0.51 -8.72 4.23 -226.35 -0.96 -9.68 16
14 C 0.04 0.55 5.28 -3.70 -0.02 0.53 16
15 C 0.11 1.38 6.48 -3.60 -0.02 1.35 16
16 N -0.59 -8.12 3.01 -172.96 -0.52 -8.64 16
17 C 0.51 7.55 5.53 -11.58 -0.06 7.49 16
18 O -0.52 -8.95 16.56 5.50 0.09 -8.86 16
19 C 0.52 7.05 5.67 -11.59 -0.07 6.98 16
20 O -0.51 -8.13 16.36 5.49 0.09 -8.04 16
21 N -0.60 -6.16 3.01 -172.53 -0.52 -6.68 16
22 C 0.08 0.60 6.65 -3.32 -0.02 0.58 16
23 C 0.05 0.32 7.00 37.53 0.26 0.58 16
24 O -0.38 -3.14 10.74 -35.23 -0.38 -3.51 16
25 C 0.05 0.35 6.99 37.31 0.26 0.61 16
26 C 0.07 0.60 6.56 -3.53 -0.02 0.58 16
27 C 0.11 1.68 6.60 -3.60 -0.02 1.66 16
28 C 0.04 0.70 4.62 -3.70 -0.02 0.68 16
29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16
30 H 0.04 0.60 6.90 -51.93 -0.36 0.24 16
31 H 0.05 0.90 6.49 -51.93 -0.34 0.57 16
32 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16
33 H 0.02 0.57 6.32 -51.93 -0.33 0.25 16
34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16
35 H 0.03 0.50 6.99 -51.93 -0.36 0.14 16
36 H 0.09 1.13 7.98 -51.93 -0.41 0.72 16
37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16
38 H 0.08 0.89 6.29 -51.93 -0.33 0.56 16
39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16
40 H 0.10 0.87 7.12 -51.93 -0.37 0.50 16
41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16
42 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16
43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16
44 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16
45 H 0.09 0.87 6.40 -51.92 -0.33 0.54 16
46 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16
47 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16
48 H 0.09 1.36 7.06 -51.93 -0.37 1.00 16
49 H 0.10 1.95 6.16 -51.93 -0.32 1.63 16
50 H 0.03 0.53 6.67 -51.93 -0.35 0.18 16
LS Contribution 388.54 15.07 5.86 5.86
Total: -1.00 -32.64 388.54 -8.77 -41.40
By element:
Atomic # 1 Polarization: 7.07 SS G_CDS: -8.04 Total: -0.97 kcal
Atomic # 6 Polarization: 8.61 SS G_CDS: -0.10 Total: 8.52 kcal
Atomic # 7 Polarization: -49.22 SS G_CDS: -1.26 Total: -50.48 kcal
Atomic # 8 Polarization: -20.22 SS G_CDS: -0.20 Total: -20.42 kcal
Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal
Total LS contribution 5.86 Total: 5.86 kcal
Total: -32.64 -8.77 -41.40 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000411124071.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -45.807 kcal
(2) G-P(sol) polarization free energy of solvation -32.638 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.445 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.403 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.210 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds