Wall clock time and date at job start Tue Mar 31 2020 22:56:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.08998 * 109.47363 * 2 1
4 4 C 1.52997 * 109.47459 * 120.00154 * 2 1 3
5 5 C 1.50692 * 109.47425 * 183.14070 * 4 2 1
6 6 H 1.07995 * 120.00448 * 4.99605 * 5 4 2
7 7 C 1.37883 * 120.00056 * 184.99455 * 5 4 2
8 8 N 1.31515 * 120.00026 * 0.02562 * 7 5 4
9 9 Si 1.86799 * 120.00034 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.47014 * 60.00509 * 9 7 5
11 11 H 1.48499 * 109.47230 * 179.97438 * 9 7 5
12 12 H 1.48496 * 109.47364 * 300.00764 * 9 7 5
13 13 N 1.46909 * 109.47174 * 239.99847 * 2 1 3
14 14 C 1.46895 * 110.99748 * 71.29023 * 13 2 1
15 15 C 1.53240 * 109.33804 * 172.74458 * 14 13 2
16 16 N 1.47081 * 108.51928 * 53.83356 * 15 14 13
17 17 C 1.34781 * 120.88211 * 128.79334 * 16 15 14
18 18 O 1.21349 * 119.99854 * 184.75441 * 17 16 15
19 19 C 1.49452 * 119.99861 * 4.75036 * 17 16 15
20 20 O 1.21355 * 119.99555 * 274.99553 * 19 17 16
21 21 N 1.34767 * 120.00117 * 94.99866 * 19 17 16
22 22 C 1.47151 * 120.98375 * 184.51728 * 21 19 17
23 23 C 1.53715 * 108.16385 * 129.42918 * 22 21 19
24 24 O 1.42966 * 109.14727 * 52.53656 * 23 22 21
25 25 C 1.42962 * 114.16760 * 297.28896 * 24 23 22
26 26 C 1.47158 * 120.98369 * 4.79496 * 21 19 17
27 27 C 1.47083 * 118.23655 * 308.81540 * 16 15 14
28 28 C 1.46900 * 110.99814 * 306.99070 * 13 2 1
29 29 H 1.09004 * 109.47281 * 299.99714 * 1 2 3
30 30 H 1.08995 * 109.47446 * 60.00458 * 1 2 3
31 31 H 1.09007 * 109.47338 * 180.02562 * 1 2 3
32 32 H 1.09003 * 109.46995 * 303.14235 * 4 2 1
33 33 H 1.09000 * 109.47302 * 63.13611 * 4 2 1
34 34 H 0.96997 * 119.99837 * 179.97438 * 8 7 5
35 35 H 1.08997 * 109.49593 * 292.70554 * 14 13 2
36 36 H 1.09004 * 109.49412 * 52.79330 * 14 13 2
37 37 H 1.09003 * 109.63196 * 294.12291 * 15 14 13
38 38 H 1.09004 * 109.62879 * 173.53781 * 15 14 13
39 39 H 1.08997 * 109.67930 * 249.20557 * 22 21 19
40 40 H 1.08993 * 109.68085 * 9.76092 * 22 21 19
41 41 H 1.08998 * 109.65624 * 292.57048 * 23 22 21
42 42 H 1.08992 * 109.48737 * 172.39611 * 23 22 21
43 43 H 1.09001 * 109.51248 * 302.65716 * 25 24 23
44 44 H 1.08997 * 109.55805 * 182.52636 * 25 24 23
45 45 H 1.09009 * 109.67529 * 350.24061 * 26 21 19
46 46 H 1.08990 * 109.68005 * 110.75041 * 26 21 19
47 47 H 1.08997 * 109.62487 * 291.47089 * 27 16 15
48 48 H 1.09001 * 109.78704 * 170.98881 * 27 16 15
49 49 H 1.08997 * 109.49648 * 307.21356 * 28 13 2
50 50 H 1.09002 * 109.49578 * 67.26586 * 28 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5449 -0.6542 1.2887
6 1 4.0796 -0.0800 0.5466
7 6 4.2394 -1.3260 2.2724
8 7 3.5884 -2.0257 3.1758
9 14 6.1049 -1.2434 2.3209
10 1 6.5339 0.1693 2.4802
11 1 6.6062 -2.0444 3.4665
12 1 6.6577 -1.7889 1.0552
13 7 2.0197 -0.6926 -1.1995
14 6 1.7804 0.1109 -2.4057
15 6 2.4626 -0.5574 -3.6041
16 7 2.0036 -1.9524 -3.6849
17 6 1.5212 -2.4563 -4.8382
18 8 1.0671 -3.5813 -4.8657
19 6 1.5456 -1.6295 -6.0829
20 8 0.6454 -0.8479 -6.3098
21 7 2.5671 -1.7520 -6.9533
22 6 2.6643 -0.8802 -8.1348
23 6 4.0788 -0.2799 -8.1724
24 8 5.0388 -1.3355 -8.0822
25 6 4.9805 -2.0769 -6.8613
26 6 3.6152 -2.7655 -6.7536
27 6 2.0844 -2.7828 -2.4736
28 6 1.4172 -2.0269 -1.3198
29 1 -0.3634 0.5138 0.8900
30 1 -0.3634 0.5137 -0.8900
31 1 -0.3634 -1.0277 0.0005
32 1 1.6314 -0.2410 2.1383
33 1 1.7234 -1.7639 1.2215
34 1 4.0770 -2.4986 3.8676
35 1 0.7083 0.1804 -2.5897
36 1 2.1912 1.1106 -2.2644
37 1 3.5440 -0.5350 -3.4693
38 1 2.1939 -0.0300 -4.5195
39 1 2.4863 -1.4644 -9.0377
40 1 1.9268 -0.0809 -8.0628
41 1 4.2094 0.4036 -7.3334
42 1 4.2195 0.2611 -9.1080
43 1 5.1144 -1.4000 -6.0175
44 1 5.7692 -2.8292 -6.8532
45 1 3.5075 -3.2152 -5.7665
46 1 3.5308 -3.5366 -7.5193
47 1 3.1294 -2.9744 -2.2301
48 1 1.5679 -3.7283 -2.6392
49 1 1.5645 -2.5776 -0.3908
50 1 0.3500 -1.9276 -1.5184
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000411124071.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:56:02
Heat of formation + Delta-G solvation = -110.569651 kcal
Electronic energy + Delta-G solvation = -31563.488663 eV
Core-core repulsion = 27397.617312 eV
Total energy + Delta-G solvation = -4165.871351 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 339.199 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.31778 -40.74536 -39.72620 -39.11277 -36.88614 -36.04999 -34.73996 -32.66111
-32.43056 -32.26741 -29.51728 -29.19988 -27.94716 -26.09059 -25.22812 -25.11748
-24.33251 -23.03389 -21.90899 -20.74809 -19.79077 -19.10702 -18.35003 -18.24817
-17.85711 -17.16631 -16.81380 -16.62504 -16.50333 -16.30188 -16.15613 -16.05553
-15.75625 -15.71425 -15.40436 -15.14923 -14.69163 -14.40913 -14.32601 -13.86241
-13.73992 -13.56636 -13.38996 -13.12818 -13.02574 -12.97081 -12.80775 -12.69576
-12.48328 -12.40589 -12.38950 -12.13759 -12.03610 -11.78120 -11.70077 -11.32926
-11.08428 -11.05310 -10.79398 -10.42210 -10.05496 -9.88743 -9.00896 -8.04533
-6.08971 0.77861 0.82202 1.26961 1.47570 1.48940 1.56265 2.02065
2.52042 2.80783 2.85304 3.00243 3.31893 3.61664 3.76583 3.80987
3.92830 3.98688 4.03831 4.06983 4.17068 4.19315 4.25458 4.26591
4.35942 4.42981 4.51370 4.53497 4.58509 4.62403 4.70333 4.75205
4.79851 4.84850 4.86513 4.92980 4.99840 5.07569 5.15761 5.20386
5.25666 5.51875 5.70473 5.75639 5.91581 5.94150 6.06384 6.26199
6.33703 6.45492 6.49582 6.52003 7.04663 7.56862 9.07357
Molecular weight = 339.20amu
Principal moments of inertia in cm(-1)
A = 0.013226 B = 0.003248 C = 0.002901
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2116.456552 B = 8618.163101 C = 9649.279773
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C 0.097 3.903
3 H 0.074 0.926
4 C 0.036 3.964
5 C -0.493 4.493
6 H 0.063 0.937
7 C -0.004 4.004
8 N -0.942 5.942
9 Si 0.954 3.046
10 H -0.272 1.272
11 H -0.294 1.294
12 H -0.268 1.268
13 N -0.519 5.519
14 C 0.041 3.959
15 C 0.116 3.884
16 N -0.584 5.584
17 C 0.515 3.485
18 O -0.550 6.550
19 C 0.524 3.476
20 O -0.542 6.542
21 N -0.594 5.594
22 C 0.073 3.927
23 C 0.051 3.949
24 O -0.389 6.389
25 C 0.052 3.948
26 C 0.069 3.931
27 C 0.123 3.877
28 C 0.049 3.951
29 H 0.059 0.941
30 H 0.059 0.941
31 H 0.046 0.954
32 H -0.011 1.011
33 H -0.001 1.001
34 H 0.257 0.743
35 H 0.031 0.969
36 H 0.102 0.898
37 H 0.099 0.901
38 H 0.091 0.909
39 H 0.092 0.908
40 H 0.101 0.899
41 H 0.063 0.937
42 H 0.134 0.866
43 H 0.063 0.937
44 H 0.130 0.870
45 H 0.086 0.914
46 H 0.096 0.904
47 H 0.090 0.910
48 H 0.092 0.908
49 H 0.077 0.923
50 H 0.030 0.970
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.130 3.209 -23.538 23.851
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C -0.011 4.011
3 H 0.092 0.908
4 C -0.001 4.001
5 C -0.531 4.531
6 H 0.081 0.919
7 C -0.199 4.199
8 N -0.584 5.584
9 Si 0.781 3.219
10 H -0.197 1.197
11 H -0.220 1.220
12 H -0.193 1.193
13 N -0.243 5.243
14 C -0.088 4.088
15 C -0.006 4.006
16 N -0.318 5.318
17 C 0.297 3.703
18 O -0.427 6.427
19 C 0.307 3.693
20 O -0.419 6.419
21 N -0.328 5.328
22 C -0.049 4.049
23 C -0.026 4.026
24 O -0.307 6.307
25 C -0.025 4.025
26 C -0.054 4.054
27 C 0.001 3.999
28 C -0.079 4.079
29 H 0.078 0.922
30 H 0.078 0.922
31 H 0.065 0.935
32 H 0.007 0.993
33 H 0.018 0.982
34 H 0.066 0.934
35 H 0.049 0.951
36 H 0.121 0.879
37 H 0.118 0.882
38 H 0.109 0.891
39 H 0.111 0.889
40 H 0.119 0.881
41 H 0.081 0.919
42 H 0.152 0.848
43 H 0.082 0.918
44 H 0.148 0.852
45 H 0.104 0.896
46 H 0.114 0.886
47 H 0.108 0.892
48 H 0.110 0.890
49 H 0.095 0.905
50 H 0.049 0.951
Dipole moment (debyes) X Y Z Total
from point charges 2.095 2.842 -23.632 23.895
hybrid contribution -0.633 -0.212 0.940 1.153
sum 1.462 2.629 -22.692 22.891
Atomic orbital electron populations
1.22399 0.97756 1.01379 1.01829 1.21639 0.91549 0.97576 0.90325
0.90752 1.19049 0.95454 0.94450 0.91167 1.21418 0.92665 1.28501
1.10566 0.91894 1.25816 1.02625 0.95739 0.95769 1.70091 1.37044
1.34221 1.17083 0.85663 0.80911 0.78010 0.77346 1.19695 1.22037
1.19259 1.62002 1.58405 1.02104 1.01793 1.22496 0.98442 0.98192
0.89662 1.22056 1.00877 0.79011 0.98684 1.48308 1.59984 1.14087
1.09391 1.20342 0.78340 0.86610 0.84967 1.90788 1.46535 1.19830
1.85594 1.20138 0.82630 0.82046 0.84500 1.90794 1.36502 1.37728
1.76832 1.48253 1.23598 1.36161 1.24834 1.22743 1.00109 0.95212
0.86796 1.23213 0.85411 0.89047 1.04932 1.87984 1.56634 1.47370
1.38737 1.23071 0.95709 0.96415 0.87343 1.22722 0.87702 0.90965
1.03968 1.21813 1.02696 0.93788 0.81567 1.22331 0.95593 0.91506
0.98506 0.92242 0.92161 0.93486 0.99318 0.98227 0.93446 0.95097
0.87946 0.88238 0.89087 0.88948 0.88079 0.91893 0.84799 0.91834
0.85190 0.89572 0.88563 0.89169 0.88998 0.90491 0.95142
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.68 8.44 71.98 0.61 -5.07 16
2 C 0.10 3.63 2.27 44.91 0.10 3.73 16
3 H 0.07 2.73 7.94 -2.39 -0.02 2.72 16
4 C 0.04 1.76 4.37 29.84 0.13 1.89 16
5 C -0.49 -26.08 8.79 25.60 0.22 -25.86 16
6 H 0.06 3.22 7.75 -2.91 -0.02 3.20 16
7 C 0.00 -0.20 5.46 84.66 0.46 0.26 16
8 N -0.94 -55.94 13.29 21.45 0.28 -55.66 16
9 Si 0.95 43.15 29.54 68.60 2.03 45.18 16
10 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16
11 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16
12 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16
13 N -0.52 -17.40 4.23 -870.03 -3.68 -21.08 16
14 C 0.04 1.07 5.28 86.38 0.46 1.52 16
15 C 0.12 2.62 6.48 86.35 0.56 3.18 16
16 N -0.58 -15.44 3.01 -819.50 -2.47 -17.91 16
17 C 0.51 14.72 5.53 87.27 0.48 15.20 16
18 O -0.55 -18.89 16.56 -3.24 -0.05 -18.94 16
19 C 0.52 13.49 5.67 87.27 0.50 13.99 16
20 O -0.54 -16.68 16.36 -3.26 -0.05 -16.73 16
21 N -0.59 -11.05 3.01 -818.11 -2.47 -13.51 16
22 C 0.07 0.98 6.65 86.50 0.58 1.56 16
23 C 0.05 0.52 7.00 72.22 0.51 1.02 16
24 O -0.39 -5.31 10.74 -148.98 -1.60 -6.91 16
25 C 0.05 0.60 6.99 72.08 0.50 1.11 16
26 C 0.07 1.02 6.56 86.35 0.57 1.59 16
27 C 0.12 3.57 6.60 86.35 0.57 4.14 16
28 C 0.05 1.65 4.62 86.38 0.40 2.05 16
29 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16
30 H 0.06 1.71 6.90 -2.39 -0.02 1.70 16
31 H 0.05 1.58 6.49 -2.38 -0.02 1.56 16
32 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
33 H 0.00 -0.03 6.32 -2.39 -0.02 -0.04 16
34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16
35 H 0.03 0.85 6.99 -2.39 -0.02 0.83 16
36 H 0.10 2.39 7.98 -2.38 -0.02 2.37 16
37 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16
38 H 0.09 1.87 6.29 -2.38 -0.01 1.85 16
39 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
40 H 0.10 1.49 7.12 -2.39 -0.02 1.47 16
41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
42 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16
43 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
44 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16
45 H 0.09 1.46 6.40 -2.38 -0.02 1.45 16
46 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
47 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16
48 H 0.09 2.71 7.06 -2.39 -0.02 2.69 16
49 H 0.08 3.00 6.16 -2.39 -0.01 2.99 16
50 H 0.03 1.02 6.67 -2.39 -0.02 1.00 16
Total: -1.00 -70.68 388.54 -0.43 -71.11
By element:
Atomic # 1 Polarization: 13.21 SS G_CDS: 0.94 Total: 14.14 kcal
Atomic # 6 Polarization: 13.67 SS G_CDS: 6.64 Total: 20.31 kcal
Atomic # 7 Polarization: -99.83 SS G_CDS: -8.33 Total: -108.16 kcal
Atomic # 8 Polarization: -40.88 SS G_CDS: -1.71 Total: -42.58 kcal
Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal
Total: -70.68 -0.43 -71.11 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000411124071.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.458 kcal
(2) G-P(sol) polarization free energy of solvation -70.679 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.432 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.570 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds