Wall clock time and date at job start Tue Mar 31 2020 22:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.51498 * 2 1 4 4 C 1.53299 * 109.51266 * 239.89934 * 2 1 3 5 5 N 1.47153 * 108.38402 * 187.72196 * 4 2 1 6 6 C 1.34772 * 120.97987 * 230.55426 * 5 4 2 7 7 O 1.21350 * 119.99795 * 174.25697 * 6 5 4 8 8 C 1.49451 * 120.00440 * 354.25958 * 6 5 4 9 9 O 1.21347 * 119.99607 * 353.77358 * 8 6 5 10 10 N 1.34776 * 120.00321 * 173.77127 * 8 6 5 11 11 C 1.46495 * 120.00039 * 179.97438 * 10 8 6 12 12 C 1.53040 * 109.46195 * 275.03176 * 11 10 8 13 13 C 1.53192 * 109.31157 * 178.60378 * 12 11 10 14 14 N 1.46928 * 108.76947 * 54.65383 * 13 12 11 15 15 C 1.36928 * 120.63152 * 126.36154 * 14 13 12 16 16 H 1.08005 * 120.00107 * 210.22983 * 15 14 13 17 17 C 1.38811 * 120.00302 * 30.22580 * 15 14 13 18 18 N 1.31623 * 119.99543 * 20.02227 * 17 15 14 19 19 Si 1.86798 * 120.00394 * 200.01926 * 17 15 14 20 20 H 1.48508 * 109.46983 * 94.98482 * 19 17 15 21 21 H 1.48493 * 109.47567 * 214.98740 * 19 17 15 22 22 H 1.48498 * 109.47081 * 334.98830 * 19 17 15 23 23 C 1.46924 * 118.73265 * 306.38314 * 14 13 12 24 24 C 1.53036 * 109.46026 * 154.97375 * 11 10 8 25 25 C 1.47151 * 118.03290 * 50.53738 * 5 4 2 26 26 H 1.08995 * 109.68809 * 69.19079 * 25 5 4 27 27 C 1.53007 * 109.67829 * 189.70108 * 25 5 4 28 28 C 1.53292 * 108.38419 * 309.45663 * 25 5 4 29 29 O 1.42958 * 109.22235 * 52.31146 * 28 25 5 30 30 H 1.08993 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46761 * 300.00069 * 1 2 3 32 32 H 1.08999 * 109.47051 * 59.99776 * 1 2 3 33 33 H 1.09003 * 109.67877 * 307.44717 * 4 2 1 34 34 H 1.08995 * 109.67821 * 67.96471 * 4 2 1 35 35 H 0.97000 * 119.99602 * 0.02562 * 10 8 6 36 36 H 1.08996 * 109.45874 * 35.00694 * 11 10 8 37 37 H 1.08998 * 109.49649 * 298.56588 * 12 11 10 38 38 H 1.08999 * 109.49946 * 58.66028 * 12 11 10 39 39 H 1.09002 * 109.59502 * 294.86416 * 13 12 11 40 40 H 1.09007 * 109.58105 * 174.43444 * 13 12 11 41 41 H 0.97004 * 119.99413 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.59269 * 293.81913 * 23 14 13 43 43 H 1.09009 * 109.58274 * 173.39427 * 23 14 13 44 44 H 1.08997 * 109.50148 * 301.34260 * 24 11 10 45 45 H 1.09008 * 109.49727 * 61.40429 * 24 11 10 46 46 H 1.08998 * 109.47185 * 53.76496 * 27 25 5 47 47 H 1.08994 * 109.47155 * 173.76322 * 27 25 5 48 48 H 1.08999 * 109.46957 * 293.76639 * 27 25 5 49 49 H 1.09000 * 109.50999 * 172.22808 * 28 25 5 50 50 H 1.08999 * 109.52039 * 292.33040 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5013 -0.8746 -1.1346 6 6 4.3187 -0.5011 -2.1389 7 8 5.5221 -0.5347 -1.9861 8 6 3.7432 -0.0454 -3.4407 9 8 2.5475 -0.1182 -3.6340 10 7 4.5522 0.4463 -4.3999 11 6 3.9881 0.8924 -5.6762 12 6 3.8438 -0.3062 -6.6167 13 6 3.2214 0.1580 -7.9372 14 7 4.0309 1.2571 -8.4808 15 6 4.5186 1.1984 -9.7589 16 1 5.4488 1.6890 -10.0051 17 6 3.8176 0.5084 -10.7384 18 7 2.5370 0.2525 -10.5741 19 14 4.6916 -0.0570 -12.2894 20 1 5.1403 -1.4626 -12.1204 21 1 3.7599 0.0299 -13.4424 22 1 5.8697 0.8120 -12.5385 23 6 4.3075 2.4201 -7.6266 24 6 4.9174 1.9305 -6.3094 25 6 4.0417 -1.4440 0.1101 26 1 3.7776 -2.4994 0.1760 27 6 5.5641 -1.2919 0.1279 28 6 3.4323 -0.6842 1.2938 29 8 2.0086 -0.6761 1.1652 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.5764 -1.7077 -1.3211 34 1 1.8017 -0.1396 -2.1378 35 1 5.5081 0.5042 -4.2455 36 1 3.0088 1.3390 -5.5041 37 1 4.8259 -0.7380 -6.8091 38 1 3.2006 -1.0555 -6.1551 39 1 2.2041 0.5068 -7.7593 40 1 3.2073 -0.6704 -8.6456 41 1 2.0472 -0.2300 -11.2584 42 1 3.3789 2.9533 -7.4233 43 1 5.0100 3.0843 -8.1300 44 1 5.0386 2.7734 -5.6291 45 1 5.8896 1.4776 -6.5043 46 1 5.8269 -0.2475 -0.0400 47 1 5.9500 -1.6127 1.0954 48 1 5.9999 -1.9072 -0.6593 49 1 3.7109 -1.1773 2.2251 50 1 3.8040 0.3404 1.2991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588128968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:21 Heat of formation + Delta-G solvation = -65.086166 kcal Electronic energy + Delta-G solvation = -30976.655995 eV Core-core repulsion = 26812.756956 eV Total energy + Delta-G solvation = -4163.899039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.35566 -39.62504 -38.52101 -37.48761 -35.45013 -34.48221 -33.78504 -32.19584 -30.97538 -30.17097 -29.62572 -27.03862 -26.23155 -25.55578 -24.32759 -22.64812 -22.32585 -21.80003 -21.07843 -20.12304 -19.21511 -17.83314 -17.01493 -16.91558 -16.72741 -16.27199 -16.10709 -15.58819 -15.37376 -14.86133 -14.80214 -14.58692 -14.16450 -13.80512 -13.61513 -13.43942 -13.35109 -13.09353 -13.05679 -12.71631 -12.56625 -12.48929 -12.26699 -12.19787 -11.97915 -11.54576 -11.39213 -11.27143 -11.13359 -10.95872 -10.77880 -10.67794 -10.48604 -10.46878 -10.28984 -10.15704 -9.84101 -9.70890 -9.08017 -8.87046 -8.80315 -8.48471 -6.72218 -5.84115 -3.27208 1.32987 2.12878 3.10655 3.26891 3.35953 3.41179 3.43658 3.44699 4.22103 4.34048 4.46583 4.50598 4.66940 4.70708 4.76994 4.90934 5.17387 5.17618 5.23273 5.26370 5.32826 5.36836 5.42449 5.46906 5.51267 5.56927 5.69250 5.71838 5.77472 5.84107 5.90234 5.97881 6.15581 6.18904 6.25813 6.31848 6.47401 6.57635 6.67505 6.70462 6.80142 6.83899 6.86578 7.23081 7.27404 7.54496 7.65795 7.77998 7.99667 8.40950 9.15729 9.79001 10.37027 11.24641 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.002417 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.595268 B =11584.176519 C =12127.281976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.062 0.938 4 C 0.040 3.960 5 N -0.585 5.585 6 C 0.511 3.489 7 O -0.515 6.515 8 C 0.503 3.497 9 O -0.515 6.515 10 N -0.686 5.686 11 C 0.148 3.852 12 C -0.148 4.148 13 C 0.177 3.823 14 N -0.591 5.591 15 C -0.260 4.260 16 H 0.066 0.934 17 C 0.007 3.993 18 N -0.896 5.896 19 Si 0.900 3.100 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.149 3.851 24 C -0.140 4.140 25 C 0.105 3.895 26 H 0.084 0.916 27 C -0.139 4.139 28 C 0.054 3.946 29 O -0.380 6.380 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.154 0.846 35 H 0.408 0.592 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.023 0.977 40 H 0.082 0.918 41 H 0.255 0.745 42 H 0.021 0.979 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.078 0.922 49 H 0.106 0.894 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.890 -1.031 23.864 23.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.014 3.986 3 H 0.079 0.921 4 C -0.081 4.081 5 N -0.320 5.320 6 C 0.294 3.706 7 O -0.391 6.391 8 C 0.283 3.717 9 O -0.393 6.393 10 N -0.337 5.337 11 C 0.045 3.955 12 C -0.188 4.188 13 C 0.050 3.950 14 N -0.314 5.314 15 C -0.389 4.389 16 H 0.083 0.917 17 C -0.193 4.193 18 N -0.539 5.539 19 Si 0.730 3.270 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.203 1.203 23 C 0.022 3.978 24 C -0.180 4.180 25 C 0.002 3.998 26 H 0.102 0.898 27 C -0.196 4.196 28 C -0.024 4.024 29 O -0.298 6.298 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.171 0.829 35 H 0.243 0.757 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.042 0.958 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.091 0.909 47 H 0.069 0.931 48 H 0.097 0.903 49 H 0.124 0.876 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.457 -1.244 23.774 23.811 hybrid contribution 0.966 -0.413 -0.806 1.324 sum 1.423 -1.657 22.968 23.072 Atomic orbital electron populations 1.21715 0.91872 1.03393 1.03030 1.22588 0.95924 0.95288 0.84790 0.92050 1.23695 0.78091 1.04005 1.02353 1.48036 1.07895 1.60897 1.15152 1.20303 0.86608 0.78719 0.84995 1.90799 1.14313 1.52685 1.81306 1.20132 0.86982 0.79316 0.85234 1.90471 1.14568 1.54790 1.79507 1.46237 1.11548 1.60637 1.15251 1.21259 0.97986 0.95931 0.80304 1.22590 1.01611 0.96364 0.98222 1.20681 0.91889 0.92093 0.90294 1.44081 1.61251 1.14908 1.11135 1.19143 1.02049 1.32772 0.84981 0.91675 1.25091 0.94699 1.02040 0.97431 1.70080 1.06035 1.42791 1.35029 0.86316 0.78975 0.78950 0.82785 1.21422 1.21763 1.20300 1.20844 0.97248 0.90457 0.89245 1.22374 0.99281 0.97289 0.99068 1.22152 0.96080 0.98056 0.83528 0.89793 1.22164 0.91684 1.04468 1.01326 1.23050 0.81249 1.00177 0.97885 1.87957 1.20547 1.77482 1.43860 0.91474 0.91511 0.90287 0.90436 0.82939 0.75655 0.89445 0.92316 0.92699 0.95842 0.89958 0.93555 0.96077 0.92110 0.92380 0.91545 0.90916 0.93051 0.90327 0.87554 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.57 37.16 0.36 -0.74 16 2 C 0.07 0.68 3.40 -26.58 -0.09 0.59 16 3 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.04 0.43 5.49 -3.53 -0.02 0.41 16 5 N -0.59 -6.69 3.02 -165.25 -0.50 -7.18 16 6 C 0.51 6.68 7.67 -11.59 -0.09 6.60 16 7 O -0.51 -7.11 12.04 5.50 0.07 -7.04 16 8 C 0.50 7.20 7.73 -11.59 -0.09 7.11 16 9 O -0.52 -8.17 12.80 5.50 0.07 -8.10 16 10 N -0.69 -9.64 5.07 -54.20 -0.27 -9.91 16 11 C 0.15 2.42 2.42 -67.89 -0.16 2.26 16 12 C -0.15 -2.80 5.65 -26.61 -0.15 -2.95 16 13 C 0.18 4.13 5.31 -3.71 -0.02 4.11 16 14 N -0.59 -14.33 2.98 -172.31 -0.51 -14.84 16 15 C -0.26 -6.97 9.53 -15.06 -0.14 -7.11 16 16 H 0.07 1.72 7.91 -52.48 -0.41 1.30 16 17 C 0.01 0.19 4.81 -17.43 -0.08 0.11 16 18 N -0.90 -25.77 11.57 55.49 0.64 -25.13 16 19 Si 0.90 21.39 29.60 -169.99 -5.03 16.36 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 24 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 25 C 0.10 0.99 3.68 -67.42 -0.25 0.74 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 C -0.14 -1.30 7.62 37.16 0.28 -1.02 16 28 C 0.05 0.45 6.29 37.31 0.23 0.68 16 29 O -0.38 -3.81 10.39 -35.23 -0.37 -4.17 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.15 1.86 4.34 -54.79 -0.24 1.63 16 35 H 0.41 5.14 8.09 -40.82 -0.33 4.81 16 36 H 0.09 1.54 7.58 -51.93 -0.39 1.15 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 2.16 6.33 -51.93 -0.33 1.83 16 41 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.17 7.93 -51.92 -0.41 0.76 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.07 1.06 8.14 -51.92 -0.42 0.64 16 46 H 0.07 0.78 6.83 -51.93 -0.35 0.42 16 47 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.08 0.88 6.76 -51.93 -0.35 0.52 16 49 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -30.17 386.21 -8.78 -38.95 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.30 Total: 3.91 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: -0.40 Total: 11.33 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.64 Total: -57.06 kcal Atomic # 8 Polarization: -19.09 SS G_CDS: -0.23 Total: -19.32 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.17 -8.78 -38.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588128968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.133 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds