Wall clock time and date at job start Tue Mar 31 2020 22:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.51498 * 2 1 4 4 C 1.53299 * 109.51266 * 239.89934 * 2 1 3 5 5 N 1.47153 * 108.38402 * 187.72196 * 4 2 1 6 6 C 1.34772 * 120.97987 * 230.55426 * 5 4 2 7 7 O 1.21350 * 119.99795 * 174.25697 * 6 5 4 8 8 C 1.49451 * 120.00440 * 354.25958 * 6 5 4 9 9 O 1.21347 * 119.99607 * 353.77358 * 8 6 5 10 10 N 1.34776 * 120.00321 * 173.77127 * 8 6 5 11 11 C 1.46495 * 120.00039 * 179.97438 * 10 8 6 12 12 C 1.53040 * 109.46195 * 275.03176 * 11 10 8 13 13 C 1.53192 * 109.31157 * 178.60378 * 12 11 10 14 14 N 1.46928 * 108.76947 * 54.65383 * 13 12 11 15 15 C 1.36928 * 120.63152 * 126.36154 * 14 13 12 16 16 H 1.08005 * 120.00107 * 210.22983 * 15 14 13 17 17 C 1.38811 * 120.00302 * 30.22580 * 15 14 13 18 18 N 1.31623 * 119.99543 * 20.02227 * 17 15 14 19 19 Si 1.86798 * 120.00394 * 200.01926 * 17 15 14 20 20 H 1.48508 * 109.46983 * 94.98482 * 19 17 15 21 21 H 1.48493 * 109.47567 * 214.98740 * 19 17 15 22 22 H 1.48498 * 109.47081 * 334.98830 * 19 17 15 23 23 C 1.46924 * 118.73265 * 306.38314 * 14 13 12 24 24 C 1.53036 * 109.46026 * 154.97375 * 11 10 8 25 25 C 1.47151 * 118.03290 * 50.53738 * 5 4 2 26 26 H 1.08995 * 109.68809 * 69.19079 * 25 5 4 27 27 C 1.53007 * 109.67829 * 189.70108 * 25 5 4 28 28 C 1.53292 * 108.38419 * 309.45663 * 25 5 4 29 29 O 1.42958 * 109.22235 * 52.31146 * 28 25 5 30 30 H 1.08993 * 109.46969 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46761 * 300.00069 * 1 2 3 32 32 H 1.08999 * 109.47051 * 59.99776 * 1 2 3 33 33 H 1.09003 * 109.67877 * 307.44717 * 4 2 1 34 34 H 1.08995 * 109.67821 * 67.96471 * 4 2 1 35 35 H 0.97000 * 119.99602 * 0.02562 * 10 8 6 36 36 H 1.08996 * 109.45874 * 35.00694 * 11 10 8 37 37 H 1.08998 * 109.49649 * 298.56588 * 12 11 10 38 38 H 1.08999 * 109.49946 * 58.66028 * 12 11 10 39 39 H 1.09002 * 109.59502 * 294.86416 * 13 12 11 40 40 H 1.09007 * 109.58105 * 174.43444 * 13 12 11 41 41 H 0.97004 * 119.99413 * 180.02562 * 18 17 15 42 42 H 1.08996 * 109.59269 * 293.81913 * 23 14 13 43 43 H 1.09009 * 109.58274 * 173.39427 * 23 14 13 44 44 H 1.08997 * 109.50148 * 301.34260 * 24 11 10 45 45 H 1.09008 * 109.49727 * 61.40429 * 24 11 10 46 46 H 1.08998 * 109.47185 * 53.76496 * 27 25 5 47 47 H 1.08994 * 109.47155 * 173.76322 * 27 25 5 48 48 H 1.08999 * 109.46957 * 293.76639 * 27 25 5 49 49 H 1.09000 * 109.50999 * 172.22808 * 28 25 5 50 50 H 1.08999 * 109.52039 * 292.33040 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7247 -1.2501 5 7 3.5013 -0.8746 -1.1346 6 6 4.3187 -0.5011 -2.1389 7 8 5.5221 -0.5347 -1.9861 8 6 3.7432 -0.0454 -3.4407 9 8 2.5475 -0.1182 -3.6340 10 7 4.5522 0.4463 -4.3999 11 6 3.9881 0.8924 -5.6762 12 6 3.8438 -0.3062 -6.6167 13 6 3.2214 0.1580 -7.9372 14 7 4.0309 1.2571 -8.4808 15 6 4.5186 1.1984 -9.7589 16 1 5.4488 1.6890 -10.0051 17 6 3.8176 0.5084 -10.7384 18 7 2.5370 0.2525 -10.5741 19 14 4.6916 -0.0570 -12.2894 20 1 5.1403 -1.4626 -12.1204 21 1 3.7599 0.0299 -13.4424 22 1 5.8697 0.8120 -12.5385 23 6 4.3075 2.4201 -7.6266 24 6 4.9174 1.9305 -6.3094 25 6 4.0417 -1.4440 0.1101 26 1 3.7776 -2.4994 0.1760 27 6 5.5641 -1.2919 0.1279 28 6 3.4323 -0.6842 1.2938 29 8 2.0086 -0.6761 1.1652 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.5764 -1.7077 -1.3211 34 1 1.8017 -0.1396 -2.1378 35 1 5.5081 0.5042 -4.2455 36 1 3.0088 1.3390 -5.5041 37 1 4.8259 -0.7380 -6.8091 38 1 3.2006 -1.0555 -6.1551 39 1 2.2041 0.5068 -7.7593 40 1 3.2073 -0.6704 -8.6456 41 1 2.0472 -0.2300 -11.2584 42 1 3.3789 2.9533 -7.4233 43 1 5.0100 3.0843 -8.1300 44 1 5.0386 2.7734 -5.6291 45 1 5.8896 1.4776 -6.5043 46 1 5.8269 -0.2475 -0.0400 47 1 5.9500 -1.6127 1.0954 48 1 5.9999 -1.9072 -0.6593 49 1 3.7109 -1.1773 2.2251 50 1 3.8040 0.3404 1.2991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588128968.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:20 Heat of formation + Delta-G solvation = -85.374570 kcal Electronic energy + Delta-G solvation = -30977.535766 eV Core-core repulsion = 26812.756956 eV Total energy + Delta-G solvation = -4164.778810 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.35062 -40.69092 -39.50199 -38.96506 -36.56426 -35.76408 -34.57621 -33.93257 -31.89257 -31.69228 -31.29232 -27.92102 -27.33381 -26.72216 -25.65064 -23.98752 -23.81168 -22.85822 -22.10225 -21.40923 -20.57995 -19.00595 -18.57151 -17.94867 -17.66761 -17.26542 -17.13124 -16.90809 -16.48263 -16.23637 -15.71579 -15.69120 -15.54168 -15.39113 -15.08004 -14.76098 -14.52793 -14.20991 -14.11962 -14.09406 -13.85711 -13.30948 -13.16739 -13.10541 -13.04533 -12.91148 -12.66092 -12.63908 -12.61089 -12.18167 -12.10339 -12.05922 -11.96011 -11.86348 -11.63468 -11.54184 -11.37672 -11.24684 -10.59006 -10.26939 -9.99593 -9.67546 -8.70591 -7.90007 -5.35720 0.24817 1.12780 1.46719 1.48831 1.57659 2.01949 2.26533 2.50815 2.69862 3.17278 3.26238 3.56386 3.65578 3.77667 3.80858 3.95129 3.97012 3.99588 4.02390 4.20207 4.27235 4.43308 4.44054 4.52312 4.61236 4.63799 4.68031 4.74192 4.78062 4.86156 4.90044 4.96931 4.99094 5.02544 5.03083 5.05382 5.11657 5.27440 5.29729 5.37414 5.40773 5.46639 5.62481 5.67415 5.87027 6.09797 6.14376 6.38302 6.63183 6.88453 7.12671 7.83024 8.36635 9.16996 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022014 B = 0.002417 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.595268 B =11584.176519 C =12127.281976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.075 3.925 3 H 0.061 0.939 4 C 0.041 3.959 5 N -0.583 5.583 6 C 0.512 3.488 7 O -0.524 6.524 8 C 0.501 3.499 9 O -0.532 6.532 10 N -0.678 5.678 11 C 0.160 3.840 12 C -0.132 4.132 13 C 0.186 3.814 14 N -0.609 5.609 15 C -0.265 4.265 16 H 0.070 0.930 17 C -0.048 4.048 18 N -0.932 5.932 19 Si 0.963 3.037 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.265 1.265 23 C 0.143 3.857 24 C -0.125 4.125 25 C 0.101 3.899 26 H 0.091 0.909 27 C -0.131 4.131 28 C 0.055 3.945 29 O -0.389 6.389 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.418 0.582 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.053 0.947 39 H -0.001 1.001 40 H 0.047 0.953 41 H 0.250 0.750 42 H 0.018 0.982 43 H 0.066 0.934 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.058 0.942 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.134 0.866 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 -0.772 26.039 26.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.017 3.983 3 H 0.079 0.921 4 C -0.080 4.080 5 N -0.317 5.317 6 C 0.295 3.705 7 O -0.401 6.401 8 C 0.283 3.717 9 O -0.412 6.412 10 N -0.329 5.329 11 C 0.056 3.944 12 C -0.173 4.173 13 C 0.060 3.940 14 N -0.332 5.332 15 C -0.395 4.395 16 H 0.087 0.913 17 C -0.244 4.244 18 N -0.577 5.577 19 Si 0.792 3.208 20 H -0.215 1.215 21 H -0.223 1.223 22 H -0.189 1.189 23 C 0.017 3.983 24 C -0.164 4.164 25 C -0.001 4.001 26 H 0.109 0.891 27 C -0.188 4.188 28 C -0.022 4.022 29 O -0.308 6.308 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.157 0.843 35 H 0.255 0.745 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.017 0.983 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.036 0.964 43 H 0.085 0.915 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.077 0.923 47 H 0.097 0.903 48 H 0.077 0.923 49 H 0.151 0.849 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.851 -0.971 26.000 26.084 hybrid contribution 0.510 -0.478 -1.408 1.572 sum 2.361 -1.450 24.592 24.748 Atomic orbital electron populations 1.21721 0.90701 1.03647 1.03689 1.22590 0.96853 0.94893 0.83978 0.92077 1.23646 0.77799 1.03938 1.02656 1.48159 1.08078 1.60076 1.15377 1.20015 0.86571 0.79146 0.84791 1.90811 1.14487 1.53401 1.81377 1.20463 0.86729 0.78773 0.85771 1.90494 1.15391 1.55245 1.80021 1.45972 1.12041 1.60665 1.14256 1.20904 0.97981 0.94675 0.80790 1.22335 1.00950 0.97449 0.96530 1.20403 0.91212 0.90909 0.91521 1.44331 1.61207 1.16557 1.11152 1.19494 1.02003 1.31985 0.86062 0.91257 1.25845 0.95248 1.02763 1.00511 1.70220 1.07466 1.44085 1.35976 0.85312 0.78052 0.78355 0.79107 1.21495 1.22309 1.18916 1.21026 0.97488 0.89274 0.90470 1.22179 0.98646 0.98212 0.97376 1.22367 0.96276 0.98539 0.82952 0.89134 1.22036 0.91432 1.03194 1.02158 1.23190 0.80317 1.00421 0.98307 1.87954 1.21539 1.77529 1.43792 0.91427 0.90678 0.89814 0.90410 0.84332 0.74451 0.90553 0.92253 0.92848 0.98309 0.93496 0.94105 0.96432 0.91522 0.88871 0.90927 0.92269 0.90284 0.92257 0.84868 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.57 71.98 0.69 -1.27 16 2 C 0.08 1.30 3.40 30.69 0.10 1.41 16 3 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 4 C 0.04 0.84 5.49 86.35 0.47 1.32 16 5 N -0.58 -12.57 3.02 -795.09 -2.40 -14.98 16 6 C 0.51 12.83 7.67 87.27 0.67 13.50 16 7 O -0.52 -13.76 12.04 -3.25 -0.04 -13.80 16 8 C 0.50 13.89 7.73 87.27 0.67 14.57 16 9 O -0.53 -16.73 12.80 -3.24 -0.04 -16.77 16 10 N -0.68 -18.00 5.07 -443.76 -2.25 -20.25 16 11 C 0.16 5.07 2.42 45.02 0.11 5.18 16 12 C -0.13 -5.05 5.65 30.67 0.17 -4.87 16 13 C 0.19 8.98 5.31 86.36 0.46 9.44 16 14 N -0.61 -29.80 2.98 -699.08 -2.08 -31.88 16 15 C -0.27 -14.31 9.53 84.03 0.80 -13.51 16 16 H 0.07 3.61 7.91 -2.91 -0.02 3.59 16 17 C -0.05 -2.64 4.81 84.86 0.41 -2.23 16 18 N -0.93 -55.38 11.57 21.65 0.25 -55.13 16 19 Si 0.96 44.55 29.60 68.60 2.03 46.58 16 20 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 21 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.14 5.55 6.52 86.36 0.56 6.11 16 24 C -0.12 -3.69 5.55 30.67 0.17 -3.52 16 25 C 0.10 1.70 3.68 44.97 0.17 1.86 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 C -0.13 -2.19 7.62 71.98 0.55 -1.64 16 28 C 0.05 0.76 6.29 72.08 0.45 1.22 16 29 O -0.39 -6.96 10.39 -148.98 -1.55 -8.51 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.14 3.34 4.34 -47.59 -0.21 3.13 16 35 H 0.42 9.62 8.09 -92.71 -0.75 8.87 16 36 H 0.08 2.65 7.58 -2.39 -0.02 2.63 16 37 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.05 2.57 6.33 -2.38 -0.02 2.56 16 41 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 2.48 7.93 -2.38 -0.02 2.46 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 46 H 0.06 1.16 6.83 -2.39 -0.02 1.15 16 47 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 1.24 6.76 -2.39 -0.02 1.22 16 49 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 Total: -1.00 -66.03 386.21 0.38 -65.66 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: -0.01 Total: 21.51 kcal Atomic # 6 Polarization: 21.10 SS G_CDS: 6.46 Total: 27.56 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -6.48 Total: -122.24 kcal Atomic # 8 Polarization: -37.45 SS G_CDS: -1.63 Total: -39.07 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.03 0.38 -65.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588128968.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.719 kcal (2) G-P(sol) polarization free energy of solvation -66.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds