Wall clock time and date at job start Tue Mar 31 2020 22:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47100 * 2 1 4 4 C 1.52998 * 109.47158 * 119.99931 * 2 1 3 5 5 O 1.42894 * 109.46797 * 65.00136 * 4 2 1 6 6 C 1.42904 * 113.99945 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46934 * 29.99393 * 6 5 4 8 8 C 1.53003 * 109.46892 * 269.99995 * 6 5 4 9 9 C 1.50693 * 109.47573 * 150.00294 * 6 5 4 10 10 N 1.29943 * 126.29030 * 44.96671 * 9 6 5 11 11 O 1.21306 * 110.25223 * 180.02562 * 10 9 6 12 12 C 1.33640 * 109.81158 * 0.02562 * 11 10 9 13 13 C 1.50700 * 126.55309 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.47051 * 270.02476 * 13 12 11 15 15 C 1.47451 * 110.99857 * 69.87381 * 14 13 12 16 16 C 1.54313 * 107.23173 * 123.25751 * 15 14 13 17 17 C 1.55137 * 103.02424 * 22.28246 * 16 15 14 18 18 O 1.42902 * 110.99147 * 82.47184 * 17 16 15 19 19 C 1.50691 * 110.99403 * 206.25594 * 17 16 15 20 20 H 1.08007 * 120.00037 * 116.90237 * 19 17 16 21 21 C 1.37872 * 120.00081 * 296.90288 * 19 17 16 22 22 N 1.31513 * 120.00218 * 5.06159 * 21 19 17 23 23 Si 1.86804 * 120.00341 * 185.05876 * 21 19 17 24 24 H 1.48507 * 109.47076 * 84.99827 * 23 21 19 25 25 H 1.48500 * 109.47328 * 204.99956 * 23 21 19 26 26 H 1.48497 * 109.47093 * 325.00193 * 23 21 19 27 27 C 1.47840 * 110.99864 * 190.71503 * 14 13 12 28 28 N 1.31135 * 106.89823 * 0.22623 * 12 11 10 29 29 H 1.09000 * 109.47270 * 300.00327 * 1 2 3 30 30 H 1.09004 * 109.46854 * 59.99682 * 1 2 3 31 31 H 1.08999 * 109.47454 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47176 * 240.00408 * 2 1 3 33 33 H 1.08996 * 109.47380 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47208 * 300.00284 * 3 2 1 35 35 H 1.09000 * 109.47325 * 59.99707 * 3 2 1 36 36 H 1.09005 * 109.47030 * 305.00084 * 4 2 1 37 37 H 1.09002 * 109.47266 * 185.00368 * 4 2 1 38 38 H 1.09000 * 109.47491 * 179.97438 * 8 6 5 39 39 H 1.09003 * 109.47120 * 299.99924 * 8 6 5 40 40 H 1.09006 * 109.47410 * 59.99764 * 8 6 5 41 41 H 1.09005 * 109.46699 * 30.02139 * 13 12 11 42 42 H 1.08993 * 109.47301 * 150.02088 * 13 12 11 43 43 H 1.08998 * 109.88395 * 242.66333 * 15 14 13 44 44 H 1.08996 * 109.88758 * 3.84960 * 15 14 13 45 45 H 1.08999 * 110.70737 * 140.66631 * 16 15 14 46 46 H 1.09004 * 110.70400 * 263.72216 * 16 15 14 47 47 H 0.96700 * 113.99571 * 54.62449 * 18 17 16 48 48 H 0.96996 * 120.00783 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.37270 * 332.46032 * 27 14 13 50 50 H 1.08995 * 110.37527 * 94.81063 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0981 1.1919 6 6 2.0914 -2.8660 2.3180 7 1 2.1382 -2.2250 3.1984 8 6 3.4775 -3.4502 2.0382 9 6 1.1143 -3.9867 2.5639 10 7 0.6008 -4.7707 1.6638 11 8 -0.1507 -5.5695 2.1821 12 6 -0.1895 -5.3643 3.5021 13 6 -1.0005 -6.1404 4.5076 14 7 -2.3178 -5.5100 4.6656 15 6 -3.1400 -5.6935 3.4554 16 6 -4.4457 -6.3910 3.8913 17 6 -4.5357 -6.0517 5.4024 18 8 -5.0976 -4.7532 5.6029 19 6 -5.3251 -7.0989 6.1448 20 1 -4.8482 -7.6925 6.9108 21 6 -6.6561 -7.2992 5.8462 22 7 -7.2113 -6.6480 4.8476 23 14 -7.6711 -8.4957 6.8600 24 1 -8.1927 -7.8041 8.0663 25 1 -8.8078 -8.9948 6.0452 26 1 -6.8195 -9.6394 7.2747 27 6 -3.0440 -6.0821 5.8193 28 7 0.6087 -4.3550 3.7546 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 3.8053 -4.0357 2.8972 39 1 3.4307 -4.0912 1.1577 40 1 4.1843 -2.6397 1.8603 41 1 -1.1276 -7.1652 4.1585 42 1 -0.4824 -6.1449 5.4665 43 1 -3.3677 -4.7244 3.0114 44 1 -2.6083 -6.3173 2.7370 45 1 -5.3000 -5.9811 3.3527 46 1 -4.3766 -7.4682 3.7389 47 1 -5.9568 -4.6265 5.1777 48 1 -8.1478 -6.7886 4.6377 49 1 -2.7214 -7.1074 6.0001 50 1 -2.8859 -5.4712 6.7080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:16 Heat of formation + Delta-G solvation = -29.813848 kcal Electronic energy + Delta-G solvation = -30031.307158 eV Core-core repulsion = 25868.937642 eV Total energy + Delta-G solvation = -4162.369517 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.49278 -39.00089 -38.58382 -36.21340 -35.40194 -34.86751 -32.82330 -32.18117 -31.04368 -29.83631 -28.24063 -27.40352 -26.63260 -26.43034 -24.85976 -24.25255 -23.15227 -21.09981 -20.57452 -20.11699 -19.67443 -18.03383 -17.53648 -17.05980 -16.90287 -16.25064 -15.59117 -15.44822 -14.90569 -14.83473 -14.70306 -14.50347 -14.13778 -14.01362 -13.58209 -13.17179 -12.83840 -12.80901 -12.65859 -12.50611 -12.36688 -12.30095 -12.21086 -11.73404 -11.63464 -11.55162 -11.38644 -11.28764 -11.25609 -11.20118 -11.08738 -10.93481 -10.85793 -10.80583 -10.43331 -10.39678 -10.04078 -9.92962 -9.84967 -9.26432 -8.64318 -8.13643 -7.87419 -6.23458 -4.31387 1.22878 2.17879 2.89254 3.04543 3.21925 3.28919 3.30815 3.78401 4.11809 4.27301 4.50362 4.52048 4.53421 4.67024 4.75959 4.84242 5.03408 5.07369 5.08906 5.16752 5.25489 5.27982 5.34338 5.40991 5.43452 5.49880 5.57096 5.59981 5.65085 5.74420 5.78669 5.81309 5.83650 5.95955 5.98838 6.02370 6.09379 6.14196 6.35961 6.55642 6.76914 6.84265 6.97408 7.27995 7.39416 7.44879 7.47463 7.78094 8.12166 8.25590 8.70110 9.36792 9.43868 10.83625 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.002234 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.225899 B =12529.653679 C =13420.643618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.094 4.094 3 C -0.146 4.146 4 C 0.065 3.935 5 O -0.370 6.370 6 C 0.184 3.816 7 H 0.092 0.908 8 C -0.167 4.167 9 C 0.161 3.839 10 N -0.362 5.362 11 O 0.078 5.922 12 C 0.206 3.794 13 C 0.138 3.862 14 N -0.521 5.521 15 C 0.035 3.965 16 C -0.143 4.143 17 C 0.253 3.747 18 O -0.577 6.577 19 C -0.536 4.536 20 H 0.062 0.938 21 C 0.073 3.927 22 N -0.892 5.892 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.286 1.286 26 H -0.274 1.274 27 C 0.061 3.939 28 N -0.467 5.467 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.117 0.883 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.080 0.920 46 H 0.060 0.940 47 H 0.375 0.625 48 H 0.266 0.734 49 H 0.055 0.945 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.813 8.415 -7.352 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.288 6.288 6 C 0.125 3.875 7 H 0.110 0.890 8 C -0.225 4.225 9 C -0.112 4.112 10 N -0.069 5.069 11 O 0.018 5.982 12 C -0.015 4.015 13 C 0.007 3.993 14 N -0.247 5.247 15 C -0.092 4.092 16 C -0.182 4.182 17 C 0.213 3.787 18 O -0.384 6.384 19 C -0.575 4.575 20 H 0.080 0.920 21 C -0.130 4.130 22 N -0.531 5.531 23 Si 0.727 3.273 24 H -0.204 1.204 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.065 4.065 28 N -0.202 5.202 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.079 0.921 47 H 0.224 0.776 48 H 0.076 0.924 49 H 0.073 0.927 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.603 9.364 -7.801 23.082 hybrid contribution -1.276 -1.572 0.225 2.038 sum 18.326 7.791 -7.576 21.306 Atomic orbital electron populations 1.21800 0.94313 1.02717 1.01547 1.21092 0.97015 0.95526 0.97615 1.21788 1.00934 0.95160 1.02416 1.22723 0.98561 0.81193 0.98699 1.87989 1.78632 1.20468 1.41695 1.19889 0.89083 0.87979 0.90575 0.89036 1.22247 0.94821 1.02157 1.03322 1.25428 1.00958 0.99930 0.84880 1.74623 1.06721 1.03699 1.21829 1.85332 1.47479 1.43860 1.21534 1.28826 0.94963 0.93383 0.84318 1.20776 0.90904 0.93408 0.94184 1.63646 1.00634 1.54931 1.05516 1.23007 0.95263 1.00046 0.90899 1.23298 0.95049 0.99315 1.00535 1.19522 0.87405 0.82107 0.89716 1.86174 1.39209 1.34186 1.78810 1.21466 0.95630 1.19303 1.21063 0.92000 1.24985 0.97798 0.95725 0.94457 1.69770 1.13219 1.42689 1.27422 0.86497 0.79633 0.80953 0.80217 1.20352 1.21216 1.19883 1.23064 0.94332 0.97017 0.92128 1.71844 1.12088 1.11328 1.24947 0.92749 0.92701 0.91794 0.90318 0.92545 0.91917 0.92379 0.92866 0.93020 0.90960 0.91155 0.91030 0.90896 0.86549 0.91528 0.93899 0.90139 0.92147 0.77633 0.92372 0.92723 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.09 37.16 0.34 -1.10 16 2 C -0.09 -0.80 3.16 -90.62 -0.29 -1.09 16 3 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 4 C 0.06 0.59 5.13 37.16 0.19 0.78 16 5 O -0.37 -4.61 9.51 -35.23 -0.33 -4.95 16 6 C 0.18 2.19 3.27 -27.89 -0.09 2.10 16 7 H 0.09 0.97 7.79 -51.93 -0.40 0.57 16 8 C -0.17 -1.55 9.51 37.16 0.35 -1.20 16 9 C 0.16 2.46 7.10 -156.37 -1.11 1.35 16 10 N -0.36 -5.96 12.16 30.90 0.38 -5.58 16 11 O 0.08 1.26 11.00 18.11 0.20 1.46 16 12 C 0.21 3.22 7.41 -13.05 -0.10 3.12 16 13 C 0.14 2.00 5.17 -4.98 -0.03 1.98 16 14 N -0.52 -9.60 5.15 -232.69 -1.20 -10.80 16 15 C 0.04 0.67 6.41 -2.83 -0.02 0.65 16 16 C -0.14 -3.15 5.33 -24.91 -0.13 -3.28 16 17 C 0.25 5.99 0.86 -89.63 -0.08 5.92 16 18 O -0.58 -14.67 13.14 -35.23 -0.46 -15.14 16 19 C -0.54 -13.78 8.26 -34.45 -0.28 -14.07 16 20 H 0.06 1.57 7.79 -52.48 -0.41 1.16 16 21 C 0.07 1.89 5.32 -17.82 -0.09 1.79 16 22 N -0.89 -23.29 10.85 55.43 0.60 -22.68 16 23 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C 0.06 1.22 5.86 -2.30 -0.01 1.21 16 28 N -0.47 -7.52 11.55 -9.87 -0.11 -7.63 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.77 7.82 -51.93 -0.41 0.37 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.47 8.08 -51.93 -0.42 0.06 16 37 H 0.05 0.38 7.87 -51.93 -0.41 -0.03 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 41 H 0.07 0.93 7.96 -51.93 -0.41 0.52 16 42 H 0.12 1.48 8.07 -51.93 -0.42 1.06 16 43 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.04 0.74 7.04 -51.93 -0.37 0.37 16 45 H 0.08 1.91 7.47 -51.93 -0.39 1.52 16 46 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 47 H 0.38 9.56 7.71 45.56 0.35 9.92 16 48 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 49 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 50 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 LS Contribution 406.23 15.07 6.12 6.12 Total: -1.00 -29.01 406.23 -8.71 -37.72 By element: Atomic # 1 Polarization: 16.59 SS G_CDS: -7.87 Total: 8.72 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.01 Total: -2.40 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.33 Total: -46.70 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.60 Total: -18.62 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.01 -8.71 -37.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.910 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds