Wall clock time and date at job start Tue Mar 31 2020 22:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47100 * 2 1 4 4 C 1.52998 * 109.47158 * 119.99931 * 2 1 3 5 5 O 1.42894 * 109.46797 * 65.00136 * 4 2 1 6 6 C 1.42904 * 113.99945 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46934 * 29.99393 * 6 5 4 8 8 C 1.53003 * 109.46892 * 269.99995 * 6 5 4 9 9 C 1.50693 * 109.47573 * 150.00294 * 6 5 4 10 10 N 1.29943 * 126.29030 * 44.96671 * 9 6 5 11 11 O 1.21306 * 110.25223 * 180.02562 * 10 9 6 12 12 C 1.33640 * 109.81158 * 0.02562 * 11 10 9 13 13 C 1.50700 * 126.55309 * 179.97438 * 12 11 10 14 14 N 1.46899 * 109.47051 * 270.02476 * 13 12 11 15 15 C 1.47451 * 110.99857 * 69.87381 * 14 13 12 16 16 C 1.54313 * 107.23173 * 123.25751 * 15 14 13 17 17 C 1.55137 * 103.02424 * 22.28246 * 16 15 14 18 18 O 1.42902 * 110.99147 * 82.47184 * 17 16 15 19 19 C 1.50691 * 110.99403 * 206.25594 * 17 16 15 20 20 H 1.08007 * 120.00037 * 116.90237 * 19 17 16 21 21 C 1.37872 * 120.00081 * 296.90288 * 19 17 16 22 22 N 1.31513 * 120.00218 * 5.06159 * 21 19 17 23 23 Si 1.86804 * 120.00341 * 185.05876 * 21 19 17 24 24 H 1.48507 * 109.47076 * 84.99827 * 23 21 19 25 25 H 1.48500 * 109.47328 * 204.99956 * 23 21 19 26 26 H 1.48497 * 109.47093 * 325.00193 * 23 21 19 27 27 C 1.47840 * 110.99864 * 190.71503 * 14 13 12 28 28 N 1.31135 * 106.89823 * 0.22623 * 12 11 10 29 29 H 1.09000 * 109.47270 * 300.00327 * 1 2 3 30 30 H 1.09004 * 109.46854 * 59.99682 * 1 2 3 31 31 H 1.08999 * 109.47454 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47176 * 240.00408 * 2 1 3 33 33 H 1.08996 * 109.47380 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47208 * 300.00284 * 3 2 1 35 35 H 1.09000 * 109.47325 * 59.99707 * 3 2 1 36 36 H 1.09005 * 109.47030 * 305.00084 * 4 2 1 37 37 H 1.09002 * 109.47266 * 185.00368 * 4 2 1 38 38 H 1.09000 * 109.47491 * 179.97438 * 8 6 5 39 39 H 1.09003 * 109.47120 * 299.99924 * 8 6 5 40 40 H 1.09006 * 109.47410 * 59.99764 * 8 6 5 41 41 H 1.09005 * 109.46699 * 30.02139 * 13 12 11 42 42 H 1.08993 * 109.47301 * 150.02088 * 13 12 11 43 43 H 1.08998 * 109.88395 * 242.66333 * 15 14 13 44 44 H 1.08996 * 109.88758 * 3.84960 * 15 14 13 45 45 H 1.08999 * 110.70737 * 140.66631 * 16 15 14 46 46 H 1.09004 * 110.70400 * 263.72216 * 16 15 14 47 47 H 0.96700 * 113.99571 * 54.62449 * 18 17 16 48 48 H 0.96996 * 120.00783 * 180.02562 * 22 21 19 49 49 H 1.09000 * 110.37270 * 332.46032 * 27 14 13 50 50 H 1.08995 * 110.37527 * 94.81063 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 8 1.6620 -2.0981 1.1919 6 6 2.0914 -2.8660 2.3180 7 1 2.1382 -2.2250 3.1984 8 6 3.4775 -3.4502 2.0382 9 6 1.1143 -3.9867 2.5639 10 7 0.6008 -4.7707 1.6638 11 8 -0.1507 -5.5695 2.1821 12 6 -0.1895 -5.3643 3.5021 13 6 -1.0005 -6.1404 4.5076 14 7 -2.3178 -5.5100 4.6656 15 6 -3.1400 -5.6935 3.4554 16 6 -4.4457 -6.3910 3.8913 17 6 -4.5357 -6.0517 5.4024 18 8 -5.0976 -4.7532 5.6029 19 6 -5.3251 -7.0989 6.1448 20 1 -4.8482 -7.6925 6.9108 21 6 -6.6561 -7.2992 5.8462 22 7 -7.2113 -6.6480 4.8476 23 14 -7.6711 -8.4957 6.8600 24 1 -8.1927 -7.8041 8.0663 25 1 -8.8078 -8.9948 6.0452 26 1 -6.8195 -9.6394 7.2747 27 6 -3.0440 -6.0821 5.8193 28 7 0.6087 -4.3550 3.7546 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2617 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 3.8053 -4.0357 2.8972 39 1 3.4307 -4.0912 1.1577 40 1 4.1843 -2.6397 1.8603 41 1 -1.1276 -7.1652 4.1585 42 1 -0.4824 -6.1449 5.4665 43 1 -3.3677 -4.7244 3.0114 44 1 -2.6083 -6.3173 2.7370 45 1 -5.3000 -5.9811 3.3527 46 1 -4.3766 -7.4682 3.7389 47 1 -5.9568 -4.6265 5.1777 48 1 -8.1478 -6.7886 4.6377 49 1 -2.7214 -7.1074 6.0001 50 1 -2.8859 -5.4712 6.7080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152651.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:15 Heat of formation + Delta-G solvation = -51.585723 kcal Electronic energy + Delta-G solvation = -30032.251257 eV Core-core repulsion = 25868.937642 eV Total energy + Delta-G solvation = -4163.313616 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.69776 -40.20730 -39.82718 -37.24624 -36.83403 -36.00357 -34.16657 -34.07726 -32.04357 -31.29568 -29.93647 -28.07949 -27.99965 -27.29929 -26.04670 -25.78264 -24.33046 -22.30161 -21.57221 -21.44813 -21.24297 -19.30517 -18.95268 -18.59584 -17.82889 -17.10601 -17.07789 -16.82707 -16.43386 -16.32636 -15.98436 -15.75654 -15.30828 -14.88021 -14.59530 -14.39423 -14.31127 -13.94406 -13.64324 -13.61711 -13.48786 -13.35634 -13.12177 -13.10299 -12.99397 -12.94174 -12.82447 -12.66378 -12.58660 -12.38499 -12.21274 -12.18729 -12.13126 -12.01859 -11.84853 -11.70316 -11.56807 -11.20532 -11.04613 -10.74451 -10.58594 -10.05859 -9.33641 -8.17895 -6.32347 0.02181 1.01866 1.43629 1.46641 1.53908 1.71586 2.10441 2.41247 2.82842 3.00842 3.05094 3.13827 3.65061 3.83132 3.93196 3.94915 3.96126 4.01469 4.11950 4.12373 4.15935 4.32495 4.39945 4.40955 4.44925 4.56326 4.57516 4.64652 4.67790 4.72595 4.75091 4.77361 4.87536 4.89885 4.93983 5.00608 5.07702 5.10016 5.18826 5.24414 5.35719 5.36904 5.45402 5.58303 5.78730 5.86504 6.02799 6.06252 6.22750 6.73380 7.06598 7.38562 7.44400 8.87339 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.002234 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.225899 B =12529.653679 C =13420.643618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.140 4.140 4 C 0.059 3.941 5 O -0.394 6.394 6 C 0.179 3.821 7 H 0.104 0.896 8 C -0.159 4.159 9 C 0.160 3.840 10 N -0.382 5.382 11 O 0.070 5.930 12 C 0.206 3.794 13 C 0.138 3.862 14 N -0.532 5.532 15 C 0.048 3.952 16 C -0.133 4.133 17 C 0.232 3.768 18 O -0.588 6.588 19 C -0.555 4.555 20 H 0.062 0.938 21 C 0.030 3.970 22 N -0.911 5.911 23 Si 0.957 3.043 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.267 1.267 27 C 0.071 3.929 28 N -0.480 5.480 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.140 0.860 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.055 0.945 47 H 0.369 0.631 48 H 0.266 0.734 49 H 0.074 0.926 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.802 8.446 -6.955 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.197 4.197 4 C -0.017 4.017 5 O -0.313 6.313 6 C 0.120 3.880 7 H 0.122 0.878 8 C -0.217 4.217 9 C -0.113 4.113 10 N -0.091 5.091 11 O 0.012 5.988 12 C -0.016 4.016 13 C 0.009 3.991 14 N -0.258 5.258 15 C -0.080 4.080 16 C -0.172 4.172 17 C 0.193 3.807 18 O -0.395 6.395 19 C -0.593 4.593 20 H 0.080 0.920 21 C -0.171 4.171 22 N -0.550 5.550 23 Si 0.783 3.217 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.191 1.191 27 C -0.055 4.055 28 N -0.215 5.215 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.158 0.842 43 H 0.070 0.930 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.217 0.783 48 H 0.075 0.925 49 H 0.092 0.908 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.605 9.386 -7.402 24.691 hybrid contribution -1.892 -1.531 0.089 2.436 sum 19.713 7.855 -7.313 22.445 Atomic orbital electron populations 1.21787 0.95686 1.00822 1.02005 1.21122 0.95830 0.96958 0.97287 1.21751 1.01779 0.93389 1.02822 1.22935 1.00097 0.79689 0.98930 1.87965 1.79312 1.22021 1.41976 1.20177 0.89306 0.87449 0.91072 0.87834 1.22205 0.93716 1.02814 1.02944 1.26116 1.00688 1.00192 0.84327 1.74615 1.07559 1.04447 1.22497 1.85306 1.47669 1.44037 1.21754 1.29009 0.94918 0.93327 0.84313 1.20952 0.88768 0.94053 0.95333 1.63488 1.01837 1.55985 1.04495 1.22817 0.94268 0.99226 0.91658 1.23084 0.95709 0.98976 0.99450 1.19825 0.89287 0.80958 0.90678 1.86169 1.38932 1.35422 1.78953 1.21783 0.96322 1.19872 1.21327 0.91998 1.25679 0.98835 0.97261 0.95338 1.69873 1.13286 1.43583 1.28277 0.85590 0.78219 0.79253 0.78622 1.20555 1.21124 1.19114 1.22900 0.92081 0.98146 0.92371 1.71860 1.12544 1.11606 1.25491 0.92870 0.91693 0.94759 0.90759 0.91151 0.91374 0.92141 0.92784 0.90571 0.90300 0.92471 0.88417 0.88399 0.84237 0.93023 0.91765 0.92597 0.92621 0.78312 0.92470 0.90773 0.90827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.09 71.98 0.65 -2.19 16 2 C -0.09 -1.49 3.16 -10.79 -0.03 -1.52 16 3 C -0.14 -1.50 9.19 71.98 0.66 -0.84 16 4 C 0.06 1.00 5.13 71.98 0.37 1.36 16 5 O -0.39 -9.52 9.51 -148.98 -1.42 -10.94 16 6 C 0.18 4.04 3.27 29.85 0.10 4.13 16 7 H 0.10 2.02 7.79 -2.39 -0.02 2.00 16 8 C -0.16 -2.64 9.51 71.98 0.68 -1.95 16 9 C 0.16 4.76 7.10 138.46 0.98 5.74 16 10 N -0.38 -12.46 12.16 -60.30 -0.73 -13.19 16 11 O 0.07 2.21 11.00 74.86 0.82 3.04 16 12 C 0.21 6.12 7.41 88.38 0.65 6.77 16 13 C 0.14 3.70 5.17 85.56 0.44 4.14 16 14 N -0.53 -18.86 5.15 -890.10 -4.58 -23.44 16 15 C 0.05 1.81 6.41 86.64 0.56 2.36 16 16 C -0.13 -5.89 5.33 31.77 0.17 -5.73 16 17 C 0.23 11.03 0.86 -10.15 -0.01 11.02 16 18 O -0.59 -30.46 13.14 -148.98 -1.96 -32.41 16 19 C -0.55 -28.41 8.26 25.60 0.21 -28.20 16 20 H 0.06 3.09 7.79 -2.91 -0.02 3.06 16 21 C 0.03 1.53 5.32 84.65 0.45 1.98 16 22 N -0.91 -48.16 10.85 21.45 0.23 -47.93 16 23 Si 0.96 41.21 29.54 68.60 2.03 43.23 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 25 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 C 0.07 2.78 5.86 86.78 0.51 3.29 16 28 N -0.48 -14.86 11.55 -303.18 -3.50 -18.36 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.03 0.85 7.82 -2.39 -0.02 0.84 16 32 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.05 0.89 8.08 -2.38 -0.02 0.87 16 37 H 0.08 0.90 7.87 -2.39 -0.02 0.88 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 1.09 7.87 -2.38 -0.02 1.08 16 41 H 0.10 2.19 7.96 -2.38 -0.02 2.17 16 42 H 0.14 3.12 8.07 -2.39 -0.02 3.10 16 43 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.06 2.13 7.04 -2.39 -0.02 2.11 16 45 H 0.06 2.72 7.47 -2.39 -0.02 2.70 16 46 H 0.06 2.47 8.04 -2.39 -0.02 2.45 16 47 H 0.37 19.47 7.71 -74.06 -0.57 18.90 16 48 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 49 H 0.07 2.57 7.70 -2.39 -0.02 2.55 16 50 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -62.62 406.23 -2.35 -64.97 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: 0.36 Total: 34.65 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: 6.40 Total: 0.38 kcal Atomic # 7 Polarization: -94.33 SS G_CDS: -8.59 Total: -102.92 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -2.55 Total: -40.31 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.23 kcal Total: -62.62 -2.35 -64.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152651.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.388 kcal (2) G-P(sol) polarization free energy of solvation -62.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds