Wall clock time and date at job start Tue Mar 31 2020 22:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.42899 * 109.47142 * 175.00200 * 4 2 1 6 6 C 1.42894 * 114.00189 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.47437 * 329.99968 * 6 5 4 8 8 C 1.53001 * 109.47126 * 89.99889 * 6 5 4 9 9 C 1.50703 * 109.47472 * 209.99897 * 6 5 4 10 10 N 1.29946 * 126.28337 * 314.69342 * 9 6 5 11 11 O 1.21301 * 110.24890 * 179.83914 * 10 9 6 12 12 C 1.33647 * 109.81119 * 0.42603 * 11 10 9 13 13 C 1.50692 * 126.55213 * 179.71982 * 12 11 10 14 14 N 1.46907 * 109.47030 * 270.02185 * 13 12 11 15 15 C 1.47430 * 111.00007 * 69.87377 * 14 13 12 16 16 C 1.54319 * 107.23579 * 123.25861 * 15 14 13 17 17 C 1.55147 * 103.01762 * 22.28458 * 16 15 14 18 18 O 1.42898 * 110.99322 * 82.47215 * 17 16 15 19 19 C 1.50695 * 110.99205 * 206.25918 * 17 16 15 20 20 H 1.07997 * 120.00725 * 118.54014 * 19 17 16 21 21 C 1.37879 * 119.99770 * 298.54302 * 19 17 16 22 22 N 1.31521 * 119.99832 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00410 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47103 * 59.99736 * 23 21 19 25 25 H 1.48498 * 109.47564 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47125 * 300.00468 * 23 21 19 27 27 C 1.47842 * 110.99901 * 190.71874 * 14 13 12 28 28 N 1.31133 * 106.89707 * 359.73346 * 12 11 10 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 36 36 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 37 37 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 38 38 H 1.09001 * 109.47415 * 179.97438 * 8 6 5 39 39 H 1.09001 * 109.47259 * 300.00067 * 8 6 5 40 40 H 1.09003 * 109.46818 * 60.00202 * 8 6 5 41 41 H 1.09002 * 109.47734 * 30.01964 * 13 12 11 42 42 H 1.09002 * 109.47185 * 150.02084 * 13 12 11 43 43 H 1.09000 * 109.88981 * 242.66623 * 15 14 13 44 44 H 1.09001 * 109.89510 * 3.85368 * 15 14 13 45 45 H 1.09004 * 110.70822 * 140.66269 * 16 15 14 46 46 H 1.08993 * 110.70688 * 263.72793 * 16 15 14 47 47 H 0.96701 * 113.99566 * 61.45704 * 18 17 16 48 48 H 0.97001 * 119.99569 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.37695 * 332.46647 * 27 14 13 50 50 H 1.09000 * 110.37679 * 94.80246 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8238 1.1920 6 6 4.0451 -1.4846 2.3179 7 1 3.4252 -1.3152 3.1983 8 6 4.1339 -2.9862 2.0380 9 6 5.4274 -0.9369 2.5639 10 7 6.3398 -0.7198 1.6645 11 8 7.3417 -0.2731 2.1822 12 6 7.1613 -0.1682 3.5022 13 6 8.1638 0.3363 4.5078 14 7 8.9697 -0.7881 5.0022 15 6 9.8717 -1.2939 3.9514 16 6 11.3092 -1.2190 4.5078 17 6 11.0895 -1.2094 6.0436 18 8 10.9063 -2.5357 6.5429 19 6 12.2314 -0.5232 6.7480 20 1 12.0489 0.3659 7.3332 21 6 13.5093 -1.0306 6.6454 22 7 13.7315 -2.1137 5.9331 23 14 14.9248 -0.1807 7.5191 24 1 14.6633 -0.1600 8.9808 25 1 16.1856 -0.9186 7.2527 26 1 15.0504 1.2119 7.0190 27 6 9.7846 -0.3838 6.1677 28 7 5.9451 -0.5884 3.7552 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.7517 -0.1584 2.1369 37 1 1.6055 -1.7198 1.2950 38 1 4.5775 -3.4903 2.8967 39 1 3.1342 -3.3824 1.8602 40 1 4.7539 -3.1556 1.1576 41 1 8.8160 1.0701 4.0341 42 1 7.6390 0.8017 5.3421 43 1 9.6200 -2.3271 3.7124 44 1 9.7867 -0.6734 3.0593 45 1 11.8852 -2.0940 4.2064 46 1 11.8019 -0.3035 4.1806 47 1 11.6647 -3.1182 6.3992 48 1 14.6306 -2.4704 5.8606 49 1 10.0049 0.6828 6.1251 50 1 9.2675 -0.6285 7.0955 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592152654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:23 Heat of formation + Delta-G solvation = -30.379504 kcal Electronic energy + Delta-G solvation = -29838.810076 eV Core-core repulsion = 25676.416031 eV Total energy + Delta-G solvation = -4162.394045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.49199 -39.03300 -38.57983 -36.24135 -35.42310 -34.88621 -32.83219 -32.17341 -31.02353 -29.84135 -28.23549 -27.49901 -26.66852 -26.43750 -24.85622 -24.26094 -23.15539 -21.10320 -20.63942 -20.11120 -19.67510 -18.03042 -17.55733 -17.12492 -16.87262 -16.29207 -15.59517 -15.44985 -14.92673 -14.80517 -14.74747 -14.53279 -14.16444 -14.00796 -13.61311 -13.17022 -12.87703 -12.83336 -12.66549 -12.55024 -12.35585 -12.31530 -12.20030 -11.73749 -11.60458 -11.57506 -11.41343 -11.34530 -11.29705 -11.23093 -11.13403 -10.95603 -10.88364 -10.80560 -10.49217 -10.39073 -10.07492 -9.93546 -9.84800 -9.26490 -8.64116 -8.14619 -7.87781 -6.25063 -4.33866 1.22837 2.19564 2.89988 2.98793 3.21398 3.27066 3.29426 3.79437 4.11414 4.25733 4.44693 4.48243 4.52084 4.64997 4.73849 4.81904 5.02500 5.03485 5.10186 5.11529 5.22373 5.26944 5.32103 5.37687 5.44276 5.50795 5.51160 5.56701 5.57382 5.70531 5.75536 5.83745 5.88102 5.91436 5.95812 6.01487 6.02164 6.09199 6.35643 6.55193 6.76539 6.81083 6.97575 7.30199 7.39656 7.44515 7.47160 7.77046 8.09057 8.25696 8.68223 9.34862 9.46873 10.81878 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.001935 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.549820 B =14465.760313 C =14697.480891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.145 4.145 4 C 0.065 3.935 5 O -0.371 6.371 6 C 0.185 3.815 7 H 0.092 0.908 8 C -0.169 4.169 9 C 0.162 3.838 10 N -0.362 5.362 11 O 0.078 5.922 12 C 0.207 3.793 13 C 0.137 3.863 14 N -0.521 5.521 15 C 0.036 3.964 16 C -0.143 4.143 17 C 0.253 3.747 18 O -0.579 6.579 19 C -0.538 4.538 20 H 0.062 0.938 21 C 0.073 3.927 22 N -0.894 5.894 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.276 1.276 27 C 0.061 3.939 28 N -0.468 5.468 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.116 0.884 43 H 0.066 0.934 44 H 0.042 0.958 45 H 0.079 0.921 46 H 0.059 0.941 47 H 0.378 0.622 48 H 0.268 0.732 49 H 0.055 0.945 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.967 3.646 -9.682 23.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 C -0.203 4.203 4 C -0.012 4.012 5 O -0.289 6.289 6 C 0.126 3.874 7 H 0.109 0.891 8 C -0.227 4.227 9 C -0.112 4.112 10 N -0.069 5.069 11 O 0.018 5.982 12 C -0.014 4.014 13 C 0.007 3.993 14 N -0.247 5.247 15 C -0.091 4.091 16 C -0.182 4.182 17 C 0.213 3.787 18 O -0.386 6.386 19 C -0.577 4.577 20 H 0.080 0.920 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.728 3.272 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.065 4.065 28 N -0.202 5.202 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.134 0.866 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.227 0.773 48 H 0.078 0.922 49 H 0.073 0.927 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.157 3.194 -10.193 24.597 hybrid contribution 1.954 0.748 0.211 2.103 sum -20.203 3.942 -9.982 22.876 Atomic orbital electron populations 1.21789 0.94165 1.02023 1.02331 1.21095 0.95465 0.96990 0.97763 1.21791 1.02053 0.95008 1.01420 1.22712 0.80519 0.99454 0.98504 1.87976 1.20353 1.78666 1.41918 1.19893 0.85656 0.91502 0.90370 0.89064 1.22255 1.03259 0.93555 1.03627 1.25411 0.98764 1.02110 0.84880 1.74625 0.94804 1.15365 1.22099 1.85332 1.32441 1.58811 1.21615 1.28814 0.93476 0.94904 0.84255 1.20777 0.92179 0.93218 0.93115 1.63642 1.24842 1.28807 1.07410 1.22989 0.94009 0.99745 0.92381 1.23269 0.92816 1.02486 0.99627 1.19512 0.89370 0.81260 0.88603 1.86147 1.45101 1.23792 1.83600 1.21469 0.92091 1.12164 1.31931 0.91997 1.24999 0.98889 0.94775 0.94370 1.69727 1.22372 1.21537 1.39616 0.86523 0.80958 0.79511 0.80225 1.20033 1.21168 1.20156 1.23049 0.93813 0.97838 0.91778 1.71835 1.07200 1.16721 1.24482 0.91936 0.92451 0.92435 0.90234 0.91864 0.92725 0.92887 0.92979 0.92919 0.90683 0.91040 0.91114 0.90892 0.86560 0.91514 0.93917 0.90196 0.92233 0.77283 0.92250 0.92724 0.90359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.19 37.16 0.34 -0.47 16 2 C -0.09 -0.72 3.16 -90.62 -0.29 -1.01 16 3 C -0.15 -1.20 9.09 37.16 0.34 -0.86 16 4 C 0.06 0.55 5.13 37.16 0.19 0.74 16 5 O -0.37 -4.40 9.51 -35.23 -0.33 -4.73 16 6 C 0.19 2.21 3.27 -27.88 -0.09 2.12 16 7 H 0.09 0.95 7.79 -51.93 -0.40 0.54 16 8 C -0.17 -1.74 9.51 37.16 0.35 -1.39 16 9 C 0.16 2.47 7.10 -156.37 -1.11 1.36 16 10 N -0.36 -5.98 12.16 30.90 0.38 -5.60 16 11 O 0.08 1.26 11.00 18.09 0.20 1.46 16 12 C 0.21 3.23 7.41 -13.06 -0.10 3.14 16 13 C 0.14 2.01 5.17 -4.98 -0.03 1.98 16 14 N -0.52 -9.55 5.15 -232.70 -1.20 -10.74 16 15 C 0.04 0.69 6.41 -2.84 -0.02 0.67 16 16 C -0.14 -3.14 5.37 -24.90 -0.13 -3.27 16 17 C 0.25 5.98 0.87 -89.63 -0.08 5.90 16 18 O -0.58 -14.70 13.16 -35.23 -0.46 -15.17 16 19 C -0.54 -13.76 8.27 -34.44 -0.28 -14.04 16 20 H 0.06 1.56 7.79 -52.49 -0.41 1.15 16 21 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 22 N -0.89 -23.17 10.75 55.43 0.60 -22.58 16 23 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.06 1.23 5.86 -2.30 -0.01 1.22 16 28 N -0.47 -7.54 11.55 -9.87 -0.11 -7.65 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.65 7.82 -51.93 -0.41 0.24 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.05 0.41 8.08 -51.93 -0.42 -0.01 16 37 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.56 7.87 -51.93 -0.41 0.15 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.94 7.96 -51.93 -0.41 0.53 16 42 H 0.12 1.49 8.07 -51.93 -0.42 1.07 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.04 0.73 7.04 -51.93 -0.37 0.36 16 45 H 0.08 1.89 7.54 -51.93 -0.39 1.50 16 46 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 47 H 0.38 9.70 7.56 45.56 0.34 10.04 16 48 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 49 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 50 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -28.64 406.08 -8.73 -37.37 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -7.88 Total: 8.66 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.01 Total: -2.16 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: -0.34 Total: -46.57 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.60 Total: -18.44 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.64 -8.73 -37.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.990 kcal (2) G-P(sol) polarization free energy of solvation -28.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds