Wall clock time and date at job start Tue Mar 31 2020 22:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 O 1.42899 * 109.47142 * 175.00200 * 4 2 1 6 6 C 1.42894 * 114.00189 * 179.97438 * 5 4 2 7 7 H 1.08998 * 109.47437 * 329.99968 * 6 5 4 8 8 C 1.53001 * 109.47126 * 89.99889 * 6 5 4 9 9 C 1.50703 * 109.47472 * 209.99897 * 6 5 4 10 10 N 1.29946 * 126.28337 * 314.69342 * 9 6 5 11 11 O 1.21301 * 110.24890 * 179.83914 * 10 9 6 12 12 C 1.33647 * 109.81119 * 0.42603 * 11 10 9 13 13 C 1.50692 * 126.55213 * 179.71982 * 12 11 10 14 14 N 1.46907 * 109.47030 * 270.02185 * 13 12 11 15 15 C 1.47430 * 111.00007 * 69.87377 * 14 13 12 16 16 C 1.54319 * 107.23579 * 123.25861 * 15 14 13 17 17 C 1.55147 * 103.01762 * 22.28458 * 16 15 14 18 18 O 1.42898 * 110.99322 * 82.47215 * 17 16 15 19 19 C 1.50695 * 110.99205 * 206.25918 * 17 16 15 20 20 H 1.07997 * 120.00725 * 118.54014 * 19 17 16 21 21 C 1.37879 * 119.99770 * 298.54302 * 19 17 16 22 22 N 1.31521 * 119.99832 * 359.97438 * 21 19 17 23 23 Si 1.86797 * 120.00410 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47103 * 59.99736 * 23 21 19 25 25 H 1.48498 * 109.47564 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47125 * 300.00468 * 23 21 19 27 27 C 1.47842 * 110.99901 * 190.71874 * 14 13 12 28 28 N 1.31133 * 106.89707 * 359.73346 * 12 11 10 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 36 36 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 37 37 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 38 38 H 1.09001 * 109.47415 * 179.97438 * 8 6 5 39 39 H 1.09001 * 109.47259 * 300.00067 * 8 6 5 40 40 H 1.09003 * 109.46818 * 60.00202 * 8 6 5 41 41 H 1.09002 * 109.47734 * 30.01964 * 13 12 11 42 42 H 1.09002 * 109.47185 * 150.02084 * 13 12 11 43 43 H 1.09000 * 109.88981 * 242.66623 * 15 14 13 44 44 H 1.09001 * 109.89510 * 3.85368 * 15 14 13 45 45 H 1.09004 * 110.70822 * 140.66269 * 16 15 14 46 46 H 1.08993 * 110.70688 * 263.72793 * 16 15 14 47 47 H 0.96701 * 113.99566 * 61.45704 * 18 17 16 48 48 H 0.97001 * 119.99569 * 179.97438 * 22 21 19 49 49 H 1.08997 * 110.37695 * 332.46647 * 27 14 13 50 50 H 1.09000 * 110.37679 * 94.80246 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 8 3.4642 -0.8238 1.1920 6 6 4.0451 -1.4846 2.3179 7 1 3.4252 -1.3152 3.1983 8 6 4.1339 -2.9862 2.0380 9 6 5.4274 -0.9369 2.5639 10 7 6.3398 -0.7198 1.6645 11 8 7.3417 -0.2731 2.1822 12 6 7.1613 -0.1682 3.5022 13 6 8.1638 0.3363 4.5078 14 7 8.9697 -0.7881 5.0022 15 6 9.8717 -1.2939 3.9514 16 6 11.3092 -1.2190 4.5078 17 6 11.0895 -1.2094 6.0436 18 8 10.9063 -2.5357 6.5429 19 6 12.2314 -0.5232 6.7480 20 1 12.0489 0.3659 7.3332 21 6 13.5093 -1.0306 6.6454 22 7 13.7315 -2.1137 5.9331 23 14 14.9248 -0.1807 7.5191 24 1 14.6633 -0.1600 8.9808 25 1 16.1856 -0.9186 7.2527 26 1 15.0504 1.2119 7.0190 27 6 9.7846 -0.3838 6.1677 28 7 5.9451 -0.5884 3.7552 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.7517 -0.1584 2.1369 37 1 1.6055 -1.7198 1.2950 38 1 4.5775 -3.4903 2.8967 39 1 3.1342 -3.3824 1.8602 40 1 4.7539 -3.1556 1.1576 41 1 8.8160 1.0701 4.0341 42 1 7.6390 0.8017 5.3421 43 1 9.6200 -2.3271 3.7124 44 1 9.7867 -0.6734 3.0593 45 1 11.8852 -2.0940 4.2064 46 1 11.8019 -0.3035 4.1806 47 1 11.6647 -3.1182 6.3992 48 1 14.6306 -2.4704 5.8606 49 1 10.0049 0.6828 6.1251 50 1 9.2675 -0.6285 7.0955 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592152654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:22 Heat of formation + Delta-G solvation = -51.700173 kcal Electronic energy + Delta-G solvation = -29839.734610 eV Core-core repulsion = 25676.416031 eV Total energy + Delta-G solvation = -4163.318579 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.70078 -40.19431 -39.82965 -37.24615 -36.83252 -35.99989 -34.15241 -34.07638 -32.05166 -31.29883 -29.92064 -28.06197 -28.00078 -27.29958 -26.04238 -25.79025 -24.34027 -22.30119 -21.55980 -21.43776 -21.23194 -19.27994 -19.02820 -18.58159 -17.82044 -17.09076 -17.05604 -16.84191 -16.46059 -16.23829 -16.02294 -15.73439 -15.30609 -14.86943 -14.58968 -14.38210 -14.32076 -13.93935 -13.64291 -13.61028 -13.48374 -13.38629 -13.13053 -13.11701 -12.98516 -12.91121 -12.81244 -12.66519 -12.55659 -12.39588 -12.26754 -12.19775 -12.12149 -12.00260 -11.84053 -11.70227 -11.55802 -11.20701 -11.03958 -10.74409 -10.56785 -10.05614 -9.33276 -8.18151 -6.33609 0.01823 1.03263 1.44932 1.46848 1.53410 1.71288 2.06098 2.41299 2.83905 3.01897 3.04577 3.13579 3.64335 3.83492 3.93415 3.95081 3.96914 4.01529 4.11605 4.13039 4.17069 4.31904 4.40795 4.41132 4.44988 4.55532 4.57328 4.64020 4.68076 4.73552 4.75058 4.78290 4.87457 4.90251 4.95867 5.00939 5.08200 5.08417 5.20209 5.25708 5.36878 5.38040 5.48537 5.58296 5.78996 5.87019 6.03121 6.05644 6.21095 6.72670 7.06335 7.37805 7.47483 8.86867 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034240 B = 0.001935 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.549820 B =14465.760313 C =14697.480891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 C -0.144 4.144 4 C 0.058 3.942 5 O -0.391 6.391 6 C 0.183 3.817 7 H 0.108 0.892 8 C -0.163 4.163 9 C 0.161 3.839 10 N -0.383 5.383 11 O 0.070 5.930 12 C 0.206 3.794 13 C 0.138 3.862 14 N -0.531 5.531 15 C 0.048 3.952 16 C -0.133 4.133 17 C 0.232 3.768 18 O -0.589 6.589 19 C -0.557 4.557 20 H 0.062 0.938 21 C 0.030 3.970 22 N -0.912 5.912 23 Si 0.958 3.042 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.270 1.270 27 C 0.072 3.928 28 N -0.480 5.480 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.139 0.861 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.371 0.629 48 H 0.267 0.733 49 H 0.074 0.926 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.638 4.639 -9.642 25.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.201 4.201 4 C -0.018 4.018 5 O -0.310 6.310 6 C 0.123 3.877 7 H 0.126 0.874 8 C -0.221 4.221 9 C -0.113 4.113 10 N -0.091 5.091 11 O 0.013 5.987 12 C -0.015 4.015 13 C 0.009 3.991 14 N -0.257 5.257 15 C -0.079 4.079 16 C -0.173 4.173 17 C 0.192 3.808 18 O -0.397 6.397 19 C -0.596 4.596 20 H 0.080 0.920 21 C -0.171 4.171 22 N -0.551 5.551 23 Si 0.784 3.216 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.195 1.195 27 C -0.055 4.055 28 N -0.215 5.215 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.157 0.843 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.220 0.780 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.837 4.203 -10.156 26.249 hybrid contribution 2.421 0.439 0.183 2.467 sum -21.416 4.643 -9.973 24.077 Atomic orbital electron populations 1.21753 0.92283 1.02844 1.02897 1.21126 0.96924 0.96152 0.97123 1.21772 1.00285 0.95926 1.02128 1.22950 0.78886 1.00785 0.99140 1.87961 1.22303 1.78805 1.41907 1.20104 0.84314 0.92035 0.91209 0.87439 1.22222 1.04620 0.92591 1.02654 1.26087 0.99836 1.01027 0.84338 1.74618 0.95291 1.16424 1.22805 1.85306 1.32539 1.59050 1.21848 1.28995 0.93633 0.94632 0.84270 1.20943 0.91986 0.92274 0.93906 1.63491 1.24388 1.30891 1.06890 1.22809 0.92154 0.99710 0.93237 1.23061 0.94330 1.00984 0.98893 1.19825 0.91028 0.80641 0.89269 1.86143 1.44829 1.24706 1.84006 1.21788 0.93080 1.12426 1.32278 0.91993 1.25684 1.01007 0.95384 0.94996 1.69831 1.22631 1.22353 1.40302 0.85618 0.78229 0.78756 0.79022 1.20047 1.21159 1.19472 1.22888 0.92154 0.98126 0.92292 1.71848 1.07579 1.17093 1.24971 0.91354 0.91518 0.91904 0.91070 0.94498 0.91750 0.92478 0.92280 0.91065 0.91058 0.88220 0.92700 0.88493 0.84345 0.92805 0.91780 0.92680 0.92709 0.78041 0.92365 0.90832 0.90819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.19 71.98 0.66 -0.58 16 2 C -0.09 -1.31 3.16 -10.79 -0.03 -1.34 16 3 C -0.14 -2.26 9.09 71.98 0.65 -1.60 16 4 C 0.06 0.88 5.13 71.98 0.37 1.25 16 5 O -0.39 -8.87 9.51 -148.98 -1.42 -10.29 16 6 C 0.18 4.12 3.27 29.85 0.10 4.22 16 7 H 0.11 2.02 7.79 -2.39 -0.02 2.00 16 8 C -0.16 -3.14 9.51 71.98 0.68 -2.45 16 9 C 0.16 4.78 7.10 138.46 0.98 5.76 16 10 N -0.38 -12.48 12.16 -60.31 -0.73 -13.22 16 11 O 0.07 2.22 11.00 74.79 0.82 3.05 16 12 C 0.21 6.14 7.41 88.38 0.65 6.80 16 13 C 0.14 3.72 5.17 85.55 0.44 4.16 16 14 N -0.53 -18.66 5.15 -890.12 -4.58 -23.24 16 15 C 0.05 1.81 6.41 86.65 0.56 2.36 16 16 C -0.13 -5.89 5.37 31.78 0.17 -5.71 16 17 C 0.23 10.98 0.87 -10.15 -0.01 10.97 16 18 O -0.59 -30.44 13.16 -148.98 -1.96 -32.40 16 19 C -0.56 -28.39 8.27 25.60 0.21 -28.18 16 20 H 0.06 3.07 7.79 -2.91 -0.02 3.05 16 21 C 0.03 1.53 5.29 84.65 0.45 1.98 16 22 N -0.91 -47.84 10.75 21.45 0.23 -47.61 16 23 Si 0.96 40.85 29.54 68.60 2.03 42.88 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 C 0.07 2.79 5.86 86.77 0.51 3.29 16 28 N -0.48 -14.87 11.55 -303.20 -3.50 -18.37 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.04 0.76 7.82 -2.39 -0.02 0.74 16 34 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.06 0.80 8.08 -2.39 -0.02 0.78 16 37 H 0.07 0.80 7.87 -2.39 -0.02 0.78 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.32 7.87 -2.39 -0.02 1.30 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 2.20 7.96 -2.39 -0.02 2.18 16 42 H 0.14 3.13 8.07 -2.39 -0.02 3.11 16 43 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.06 2.10 7.04 -2.39 -0.02 2.08 16 45 H 0.05 2.67 7.54 -2.38 -0.02 2.65 16 46 H 0.05 2.42 8.04 -2.39 -0.02 2.40 16 47 H 0.37 19.65 7.56 -74.06 -0.56 19.09 16 48 H 0.27 13.50 8.31 -92.71 -0.77 12.72 16 49 H 0.07 2.54 7.70 -2.39 -0.02 2.52 16 50 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -61.49 406.08 -2.35 -63.83 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.37 Total: 34.45 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 6.40 Total: 0.92 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -8.59 Total: -102.44 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -2.55 Total: -39.64 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Total: -61.49 -2.35 -63.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592152654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.134 kcal (2) G-P(sol) polarization free energy of solvation -61.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds