Wall clock time and date at job start Tue Mar 31 2020 22:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.55056 * 2 1 4 4 C 1.53296 * 109.51162 * 239.87401 * 2 1 3 5 5 N 1.47150 * 108.41695 * 187.78635 * 4 2 1 6 6 C 1.34776 * 120.99032 * 230.49492 * 5 4 2 7 7 O 1.21345 * 120.00704 * 173.01816 * 6 5 4 8 8 C 1.49450 * 119.99437 * 353.02323 * 6 5 4 9 9 O 1.21344 * 120.00185 * 6.08446 * 8 6 5 10 10 N 1.34779 * 119.99885 * 186.07901 * 8 6 5 11 11 C 1.47074 * 120.88217 * 6.68276 * 10 8 6 12 12 C 1.53694 * 108.28153 * 128.74832 * 11 10 8 13 13 N 1.46906 * 109.25521 * 54.08273 * 12 11 10 14 14 C 1.46889 * 111.00023 * 172.60761 * 13 12 11 15 15 C 1.50701 * 109.47504 * 294.30057 * 14 13 12 16 16 H 1.08003 * 119.99641 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00286 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00152 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00052 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47448 * 89.99773 * 19 17 15 21 21 H 1.48496 * 109.47208 * 210.00094 * 19 17 15 22 22 H 1.48500 * 109.47157 * 330.00377 * 19 17 15 23 23 C 1.46897 * 111.26680 * 296.75746 * 13 12 11 24 24 C 1.47082 * 120.88265 * 186.95306 * 10 8 6 25 25 C 1.47155 * 118.03433 * 50.51880 * 5 4 2 26 26 H 1.08997 * 109.68235 * 69.21966 * 25 5 4 27 27 C 1.52999 * 109.68394 * 189.74227 * 25 5 4 28 28 C 1.53300 * 108.38096 * 309.46622 * 25 5 4 29 29 O 1.42957 * 109.22734 * 52.29934 * 28 25 5 30 30 H 1.09010 * 109.46506 * 180.12712 * 1 2 3 31 31 H 1.08994 * 109.46828 * 300.12556 * 1 2 3 32 32 H 1.08992 * 109.47025 * 60.12908 * 1 2 3 33 33 H 1.09007 * 109.68431 * 68.05004 * 4 2 1 34 34 H 1.08994 * 109.68580 * 307.52844 * 4 2 1 35 35 H 1.09004 * 109.62692 * 248.52309 * 11 10 8 36 36 H 1.09002 * 109.62961 * 9.09864 * 11 10 8 37 37 H 1.08992 * 109.64981 * 294.07821 * 12 11 10 38 38 H 1.08995 * 109.44422 * 173.95800 * 12 11 10 39 39 H 1.09004 * 109.47563 * 54.30231 * 14 13 12 40 40 H 1.09005 * 109.47080 * 174.29899 * 14 13 12 41 41 H 0.96990 * 119.99918 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.49537 * 303.14742 * 23 13 12 43 43 H 1.08998 * 109.49067 * 183.06077 * 23 13 12 44 44 H 1.09005 * 109.62377 * 350.90401 * 24 10 8 45 45 H 1.08998 * 109.63019 * 111.47782 * 24 10 8 46 46 H 1.08994 * 109.47307 * 54.75571 * 27 25 5 47 47 H 1.08998 * 109.47173 * 174.75537 * 27 25 5 48 48 H 1.09000 * 109.47124 * 294.75330 * 27 25 5 49 49 H 1.09003 * 109.50819 * 172.22692 * 28 25 5 50 50 H 1.09002 * 109.50874 * 292.32183 * 28 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0272 0.0000 4 6 2.0420 -0.7252 -1.2498 5 7 3.5011 -0.8769 -1.1342 6 6 4.3191 -0.5055 -2.1389 7 8 5.5219 -0.5190 -1.9787 8 6 3.7447 -0.0768 -3.4503 9 8 2.5438 0.0431 -3.5766 10 7 4.5606 0.1767 -4.4928 11 6 6.0024 -0.1008 -4.4078 12 6 6.4046 -0.9404 -5.6308 13 7 5.9767 -0.2496 -6.8546 14 6 6.4937 -0.9283 -8.0503 15 6 7.9968 -0.8231 -8.0774 16 1 8.5161 -0.3042 -7.2852 17 6 8.7090 -1.3891 -9.1134 18 7 8.0765 -2.0204 -10.0784 19 14 10.5721 -1.2593 -9.1465 20 1 11.1621 -2.4217 -8.4352 21 1 11.0427 -1.2499 -10.5549 22 1 10.9928 -0.0031 -8.4756 23 6 4.5143 -0.1235 -6.9117 24 6 4.0337 0.7439 -5.7434 25 6 4.0408 -1.4466 0.1106 26 1 3.7758 -2.5018 0.1765 27 6 5.5632 -1.2955 0.1289 28 6 3.4322 -0.6857 1.2941 29 8 2.0085 -0.6759 1.1654 30 1 -0.3633 -1.0278 0.0023 31 1 -0.3633 0.5158 0.8888 32 1 -0.3633 0.5118 -0.8911 33 1 1.8030 -0.1398 -2.1377 34 1 1.5754 -1.7076 -1.3212 35 1 6.5565 0.8379 -4.4060 36 1 6.2151 -0.6566 -3.4946 37 1 5.9250 -1.9177 -5.5782 38 1 7.4871 -1.0667 -5.6440 39 1 6.2034 -1.9787 -8.0261 40 1 6.0804 -0.4576 -8.9425 41 1 8.5776 -2.4189 -10.8070 42 1 4.0609 -1.1122 -6.8412 43 1 4.2259 0.3430 -7.8536 44 1 2.9440 0.7468 -5.7134 45 1 4.4021 1.7622 -5.8675 46 1 5.8263 -0.2485 -0.0214 47 1 5.9503 -1.6330 1.0903 48 1 5.9977 -1.8974 -0.6693 49 1 3.7102 -1.1789 2.2256 50 1 3.8052 0.3385 1.2991 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601431961.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:12 Heat of formation + Delta-G solvation = -52.202866 kcal Electronic energy + Delta-G solvation = -31258.133804 eV Core-core repulsion = 27094.793427 eV Total energy + Delta-G solvation = -4163.340377 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49653 -39.75232 -38.53254 -37.77960 -35.47841 -34.33844 -33.79334 -32.43390 -31.03201 -30.77618 -28.50351 -27.05076 -26.29343 -25.76137 -24.44158 -23.32351 -22.57166 -21.78728 -21.29970 -20.17996 -19.03260 -17.33090 -17.00521 -16.87141 -16.60134 -16.37377 -16.15301 -15.55062 -15.34311 -14.90037 -14.82891 -14.71474 -14.44715 -14.27725 -13.86866 -13.62960 -13.42118 -13.31099 -13.09080 -12.90406 -12.63407 -12.34302 -12.28211 -12.10607 -11.99008 -11.90687 -11.38838 -11.31844 -11.17454 -11.12809 -11.01289 -10.77728 -10.68330 -10.55342 -10.49777 -10.24096 -9.87990 -9.30063 -8.88292 -8.69870 -8.64091 -8.47384 -7.35816 -6.07358 -4.09298 1.26661 2.06982 3.04625 3.16431 3.29303 3.35828 3.38116 3.39971 3.99139 4.30837 4.38358 4.49951 4.66794 4.71042 4.75681 4.82053 4.90677 5.15067 5.21217 5.24715 5.27580 5.29689 5.37107 5.41132 5.44417 5.52113 5.58470 5.61229 5.69060 5.77070 5.80085 5.82036 5.84043 5.95561 6.12643 6.21127 6.26613 6.42089 6.48719 6.59332 6.79569 6.82665 7.19611 7.23201 7.27824 7.57271 7.72863 7.88111 7.99268 8.09954 8.45712 8.97995 9.55358 11.03505 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021681 B = 0.002564 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.169591 B =10919.168881 C =11900.371535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.074 3.926 3 H 0.061 0.939 4 C 0.029 3.971 5 N -0.584 5.584 6 C 0.514 3.486 7 O -0.499 6.499 8 C 0.504 3.496 9 O -0.529 6.529 10 N -0.566 5.566 11 C 0.071 3.929 12 C 0.051 3.949 13 N -0.537 5.537 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.272 1.272 23 C 0.042 3.958 24 C 0.112 3.888 25 C 0.104 3.896 26 H 0.084 0.916 27 C -0.141 4.141 28 C 0.054 3.946 29 O -0.381 6.381 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.163 0.837 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.135 0.865 37 H 0.023 0.977 38 H 0.099 0.901 39 H -0.009 1.009 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.027 0.973 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.080 0.920 49 H 0.107 0.893 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.788 3.512 21.616 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.079 0.921 4 C -0.092 4.092 5 N -0.318 5.318 6 C 0.298 3.702 7 O -0.376 6.376 8 C 0.287 3.713 9 O -0.410 6.410 10 N -0.297 5.297 11 C -0.050 4.050 12 C -0.078 4.078 13 N -0.262 5.262 14 C 0.069 3.931 15 C -0.548 4.548 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.537 5.537 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.010 4.010 25 C 0.002 3.998 26 H 0.102 0.898 27 C -0.198 4.198 28 C -0.023 4.023 29 O -0.300 6.300 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.179 0.821 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.152 0.848 37 H 0.041 0.959 38 H 0.117 0.883 39 H 0.009 0.991 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.046 0.954 43 H 0.102 0.898 44 H 0.110 0.890 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.099 0.901 49 H 0.125 0.875 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.633 3.856 21.568 25.291 hybrid contribution 0.854 -0.838 -0.437 1.274 sum -11.779 3.018 21.131 24.379 Atomic orbital electron populations 1.21707 0.91996 1.03298 1.02937 1.22549 0.95789 0.95310 0.84760 0.92055 1.23901 0.78135 1.04004 1.03134 1.48062 1.07845 1.60778 1.15141 1.20172 0.86508 0.78380 0.85188 1.90590 1.14202 1.52450 1.80378 1.20088 0.86491 0.79285 0.85401 1.90310 1.14218 1.54371 1.82068 1.48218 1.10008 1.58621 1.12812 1.23276 0.77483 1.02170 1.02033 1.22462 1.02462 0.93813 0.89090 1.62127 1.06930 1.53143 1.04033 1.19726 0.95625 0.91619 0.86146 1.21139 0.90993 1.34573 1.08093 0.91761 1.24996 0.98842 0.95277 0.95474 1.69955 1.35709 1.36545 1.11539 0.86490 0.85199 0.78508 0.77191 1.20710 1.21253 1.19712 1.22385 0.90868 0.97999 0.97531 1.21989 0.99612 0.97614 0.81740 1.22170 0.96222 0.97993 0.83453 0.89765 1.22193 0.91514 1.04536 1.01583 1.23058 0.81143 1.00215 0.97931 1.87947 1.20652 1.77520 1.43835 0.91541 0.91533 0.90397 0.82124 0.90784 0.90497 0.84831 0.95898 0.88307 0.99128 0.95024 0.92866 0.95443 0.89773 0.89039 0.90122 0.90805 0.92967 0.90138 0.87536 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.57 37.16 0.36 -0.65 16 2 C 0.07 0.67 3.40 -26.58 -0.09 0.58 16 3 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.03 0.30 5.61 -3.53 -0.02 0.28 16 5 N -0.58 -6.62 3.02 -165.25 -0.50 -7.12 16 6 C 0.51 6.80 7.55 -11.59 -0.09 6.71 16 7 O -0.50 -6.94 8.70 5.50 0.05 -6.90 16 8 C 0.50 7.26 7.69 -11.58 -0.09 7.17 16 9 O -0.53 -7.79 12.51 5.50 0.07 -7.72 16 10 N -0.57 -8.56 3.00 -172.69 -0.52 -9.08 16 11 C 0.07 1.12 6.18 -3.37 -0.02 1.10 16 12 C 0.05 0.96 5.47 -3.46 -0.02 0.94 16 13 N -0.54 -11.18 4.62 -235.47 -1.09 -12.27 16 14 C 0.19 4.93 4.72 -4.98 -0.02 4.90 16 15 C -0.51 -13.95 8.41 -34.44 -0.29 -14.24 16 16 H 0.06 1.73 7.13 -52.48 -0.37 1.36 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.36 13.29 55.43 0.74 -25.63 16 19 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 23 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 24 C 0.11 1.65 6.61 -3.60 -0.02 1.63 16 25 C 0.10 0.99 3.68 -67.42 -0.25 0.74 16 26 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 27 C -0.14 -1.35 7.62 37.16 0.28 -1.06 16 28 C 0.05 0.45 6.29 37.31 0.23 0.68 16 29 O -0.38 -3.77 10.38 -35.23 -0.37 -4.13 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.16 1.86 4.10 -55.89 -0.23 1.63 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.13 2.04 4.34 -54.77 -0.24 1.80 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.10 2.00 6.67 -51.93 -0.35 1.65 16 39 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 40 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 44 H 0.09 1.25 7.04 -51.93 -0.37 0.88 16 45 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 0.80 6.87 -51.93 -0.36 0.44 16 47 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.08 0.91 6.72 -51.93 -0.35 0.56 16 49 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -30.36 381.35 -9.19 -39.55 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.14 Total: 0.30 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -0.16 Total: 10.96 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -1.37 Total: -54.10 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.25 Total: -18.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.36 -9.19 -39.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601431961.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.654 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds