Wall clock time and date at job start Tue Mar 31 2020 22:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.44549 * 2 1 4 4 C 1.54284 * 109.40982 * 119.64403 * 2 1 3 5 5 O 1.38013 * 109.45747 * 52.31111 * 4 2 1 6 6 C 1.42152 * 119.43855 * 63.36503 * 5 4 2 7 7 C 1.51537 * 108.75504 * 272.77332 * 6 5 4 8 8 C 1.53566 * 109.58723 * 91.39917 * 7 6 5 9 9 N 1.45121 * 109.46235 * 240.03570 * 2 1 3 10 10 C 1.34780 * 118.76086 * 149.28271 * 9 2 1 11 11 O 1.21352 * 119.99579 * 4.42704 * 10 9 2 12 12 C 1.49446 * 119.99920 * 184.42721 * 10 9 2 13 13 O 1.21344 * 120.00207 * 275.62674 * 12 10 9 14 14 N 1.34777 * 119.99886 * 95.90788 * 12 10 9 15 15 C 1.47083 * 120.88117 * 4.29264 * 14 12 10 16 16 C 1.53695 * 108.27474 * 128.75474 * 15 14 12 17 17 N 1.46896 * 109.25896 * 54.08516 * 16 15 14 18 18 C 1.46901 * 111.00590 * 172.60625 * 17 16 15 19 19 C 1.50703 * 109.46980 * 294.30360 * 18 17 16 20 20 H 1.08000 * 119.99673 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00195 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00229 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99899 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46846 * 90.00312 * 23 21 19 25 25 H 1.48501 * 109.47148 * 209.99944 * 23 21 19 26 26 H 1.48497 * 109.47180 * 330.00500 * 23 21 19 27 27 C 1.46899 * 111.26886 * 296.75179 * 17 16 15 28 28 C 1.47081 * 120.88191 * 184.56955 * 14 12 10 29 29 H 1.09006 * 109.46904 * 201.45691 * 1 2 3 30 30 H 1.08998 * 109.47436 * 321.46195 * 1 2 3 31 31 H 1.09004 * 109.47168 * 81.46520 * 1 2 3 32 32 H 1.09002 * 109.53636 * 292.27949 * 4 2 1 33 33 H 1.09000 * 109.42419 * 172.27310 * 4 2 1 34 34 H 1.08993 * 109.59009 * 152.98804 * 6 5 4 35 35 H 1.09006 * 109.70697 * 32.61826 * 6 5 4 36 36 H 1.09001 * 109.45012 * 331.36192 * 7 6 5 37 37 H 1.09005 * 109.44995 * 211.43295 * 7 6 5 38 38 H 1.09007 * 109.16645 * 199.62667 * 8 7 6 39 39 H 1.08995 * 109.12717 * 80.39126 * 8 7 6 40 40 H 1.08997 * 109.62725 * 248.52408 * 15 14 12 41 41 H 1.09000 * 109.62916 * 9.10273 * 15 14 12 42 42 H 1.08994 * 109.65221 * 294.07896 * 16 15 14 43 43 H 1.09003 * 109.41885 * 173.94722 * 16 15 14 44 44 H 1.09001 * 109.46625 * 54.29281 * 18 17 16 45 45 H 1.08992 * 109.47437 * 174.29949 * 18 17 16 46 46 H 0.96998 * 120.00081 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.49798 * 303.15080 * 27 17 16 48 48 H 1.08996 * 109.50176 * 183.06251 * 27 17 16 49 49 H 1.09006 * 109.62528 * 350.89728 * 28 14 12 50 50 H 1.08999 * 109.62894 * 111.47816 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0427 -0.7197 1.2647 5 8 1.4451 -1.9600 1.3620 6 6 1.6880 -2.9335 0.3550 7 6 0.6854 -2.7374 -0.7642 8 6 1.2718 -1.7892 -1.8203 9 7 2.0135 -0.6834 -1.1854 10 6 3.1873 -0.2969 -1.7234 11 8 3.8574 0.5514 -1.1719 12 6 3.6636 -0.9130 -2.9989 13 8 4.2665 -1.9658 -2.9762 14 7 3.4283 -0.2964 -4.1741 15 6 2.7883 1.0271 -4.2173 16 6 3.6532 1.9525 -5.0879 17 7 3.8678 1.3239 -6.3981 18 6 4.5403 2.2476 -7.3215 19 6 3.6305 3.4117 -7.6187 20 1 2.6506 3.4601 -7.1672 21 6 4.0491 4.4147 -8.4670 22 7 3.2549 5.4303 -8.7269 23 14 5.7443 4.3311 -9.2474 24 1 5.6576 3.6114 -10.5435 25 1 6.2512 5.7077 -9.4786 26 1 6.6715 3.6079 -8.3406 27 6 4.6190 0.0680 -6.2700 28 6 3.7993 -0.9320 -5.4476 29 1 -0.3633 -0.9565 0.3759 30 1 -0.3634 0.8038 0.6402 31 1 -0.3634 0.1525 -1.0163 32 1 1.7965 -0.1276 2.1461 33 1 3.1239 -0.8415 1.1993 34 1 1.5742 -3.9320 0.7770 35 1 2.6990 -2.8146 -0.0350 36 1 -0.2310 -2.3079 -0.3595 37 1 0.4624 -3.7000 -1.2245 38 1 0.4609 -1.3776 -2.4213 39 1 1.9478 -2.3488 -2.4668 40 1 1.7919 0.9380 -4.6501 41 1 2.7173 1.4327 -3.2080 42 1 4.6148 2.1191 -4.6026 43 1 3.1425 2.9062 -5.2213 44 1 5.4599 2.6128 -6.8642 45 1 4.7777 1.7260 -8.2485 46 1 3.5493 6.1358 -9.3240 47 1 5.5672 0.2608 -5.7681 48 1 4.8088 -0.3451 -7.2606 49 1 4.3970 -1.8223 -5.2520 50 1 2.8982 -1.2057 -5.9963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601462538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:49 Heat of formation + Delta-G solvation = -76.846955 kcal Electronic energy + Delta-G solvation = -31629.710548 eV Core-core repulsion = 27465.301523 eV Total energy + Delta-G solvation = -4164.409025 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52592 -40.02040 -38.56937 -37.65329 -36.07906 -34.68102 -33.67394 -32.47075 -31.32514 -30.92408 -28.93780 -27.13225 -26.61990 -26.25021 -24.59509 -23.45234 -21.99732 -21.74237 -20.96541 -20.01476 -18.94114 -18.12816 -17.29991 -16.97543 -16.89329 -16.74772 -16.53584 -15.88003 -15.12068 -15.02338 -14.73408 -14.66854 -14.53091 -14.14568 -14.11560 -13.73216 -13.58795 -13.41956 -13.28826 -13.08204 -12.59986 -12.46922 -12.34598 -12.25784 -12.02720 -11.80338 -11.64906 -11.53748 -11.36753 -11.29539 -11.14890 -10.87773 -10.68332 -10.63669 -10.40239 -10.02333 -9.96706 -9.62145 -9.40338 -9.05655 -8.79890 -8.64188 -7.56234 -6.12910 -4.11270 1.90283 1.95583 2.40723 3.08943 3.23615 3.31758 3.33527 3.39230 3.91683 4.27893 4.35536 4.36659 4.52560 4.60097 4.64368 4.68297 4.85023 5.02806 5.04804 5.15419 5.16899 5.22093 5.22468 5.28006 5.30081 5.31282 5.37466 5.45908 5.53385 5.54557 5.55778 5.62788 5.67144 5.77607 5.91859 6.05566 6.16187 6.23476 6.29907 6.41806 6.70656 6.73216 6.85843 7.09278 7.21512 7.46335 7.55004 7.69629 7.72836 7.86800 8.54402 8.93464 9.48414 10.99832 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.002689 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.793158 B =10410.526213 C =10909.488127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.099 3.901 3 H 0.101 0.899 4 C 0.065 3.935 5 O -0.385 6.385 6 C 0.070 3.930 7 C -0.171 4.171 8 C 0.100 3.900 9 N -0.592 5.592 10 C 0.514 3.486 11 O -0.508 6.508 12 C 0.515 3.485 13 O -0.526 6.526 14 N -0.588 5.588 15 C 0.108 3.892 16 C 0.051 3.949 17 N -0.526 5.526 18 C 0.163 3.837 19 C -0.513 4.513 20 H 0.081 0.919 21 C 0.070 3.930 22 N -0.898 5.898 23 Si 0.874 3.126 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.268 1.268 27 C 0.036 3.964 28 C 0.117 3.883 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.106 0.894 44 H -0.010 1.010 45 H 0.027 0.973 46 H 0.265 0.735 47 H 0.030 0.970 48 H 0.086 0.914 49 H 0.092 0.908 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.923 -16.333 17.336 24.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.005 4.005 3 H 0.119 0.881 4 C -0.013 4.013 5 O -0.303 6.303 6 C -0.006 4.006 7 C -0.209 4.209 8 C -0.022 4.022 9 N -0.328 5.328 10 C 0.296 3.704 11 O -0.382 6.382 12 C 0.297 3.703 13 O -0.403 6.403 14 N -0.322 5.322 15 C -0.014 4.014 16 C -0.078 4.078 17 N -0.251 5.251 18 C 0.037 3.963 19 C -0.551 4.551 20 H 0.099 0.901 21 C -0.132 4.132 22 N -0.537 5.537 23 Si 0.702 3.298 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.193 1.193 27 C -0.093 4.093 28 C -0.005 4.005 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.048 0.952 43 H 0.124 0.876 44 H 0.008 0.992 45 H 0.045 0.955 46 H 0.074 0.926 47 H 0.048 0.952 48 H 0.104 0.896 49 H 0.111 0.889 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.826 -16.398 17.470 24.914 hybrid contribution 1.947 0.494 -0.620 2.103 sum -4.879 -15.903 16.851 23.678 Atomic orbital electron populations 1.22254 0.93043 1.03936 1.02911 1.21995 0.95900 0.97971 0.84595 0.88069 1.22441 0.96865 0.84545 0.97471 1.86260 1.72111 1.22927 1.48986 1.22236 0.98170 0.91755 0.88441 1.22659 1.00951 1.00338 0.96937 1.22059 0.97164 0.87439 0.95568 1.48091 1.20578 1.35333 1.28773 1.20449 0.81525 0.82278 0.86104 1.90819 1.53974 1.31040 1.62338 1.20127 0.80739 0.84996 0.84414 1.90779 1.41110 1.22359 1.86024 1.48300 1.58485 1.19993 1.05407 1.22211 0.97490 0.81070 1.00676 1.22420 0.98380 0.98088 0.88898 1.61925 1.48810 1.04611 1.09749 1.20184 0.93476 0.91748 0.90923 1.20984 1.02841 1.03057 1.28242 0.90050 1.24885 0.97009 0.95173 0.96115 1.69882 1.36400 1.10695 1.36682 0.86875 0.85213 0.77552 0.80202 1.20080 1.21138 1.19300 1.22469 0.94761 0.92309 0.99758 1.21903 1.00422 0.96105 0.82048 0.90091 0.91102 0.91706 0.87437 0.93467 0.88879 0.92670 0.88863 0.89249 0.90504 0.89497 0.89710 0.90294 0.95189 0.87558 0.99223 0.95486 0.92558 0.95175 0.89612 0.88949 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.21 37.16 0.31 -0.83 16 2 C 0.10 0.91 2.76 -68.00 -0.19 0.72 16 3 H 0.10 1.03 7.34 -51.93 -0.38 0.65 16 4 C 0.07 0.59 6.34 37.83 0.24 0.83 16 5 O -0.38 -3.50 8.90 -26.53 -0.24 -3.74 16 6 C 0.07 0.56 6.37 36.42 0.23 0.79 16 7 C -0.17 -1.11 5.54 -27.18 -0.15 -1.26 16 8 C 0.10 0.83 5.17 -3.19 -0.02 0.82 16 9 N -0.59 -6.26 2.12 -165.69 -0.35 -6.61 16 10 C 0.51 7.26 5.60 -11.59 -0.06 7.19 16 11 O -0.51 -8.57 16.32 5.49 0.09 -8.48 16 12 C 0.51 7.75 5.66 -11.59 -0.07 7.69 16 13 O -0.53 -8.91 16.07 5.50 0.09 -8.82 16 14 N -0.59 -8.51 3.00 -172.68 -0.52 -9.03 16 15 C 0.11 1.57 6.51 -3.36 -0.02 1.55 16 16 C 0.05 0.93 5.47 -3.47 -0.02 0.91 16 17 N -0.53 -10.29 4.62 -235.47 -1.09 -11.38 16 18 C 0.16 3.78 3.79 -4.97 -0.02 3.76 16 19 C -0.51 -13.93 8.96 -34.44 -0.31 -14.24 16 20 H 0.08 2.37 7.37 -52.49 -0.39 1.99 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -26.74 13.96 55.43 0.77 -25.96 16 23 Si 0.87 21.02 27.47 -169.99 -4.67 16.35 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 27 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 28 C 0.12 1.62 6.61 -3.60 -0.02 1.59 16 29 H 0.08 0.54 4.41 -51.93 -0.23 0.31 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 7.48 -51.93 -0.39 0.06 16 32 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.55 7.41 -51.93 -0.38 0.17 16 36 H 0.09 0.56 5.22 -51.93 -0.27 0.29 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.55 7.74 -51.93 -0.40 0.15 16 39 H 0.09 0.84 6.08 -51.93 -0.32 0.52 16 40 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 41 H 0.08 1.10 6.26 -51.93 -0.33 0.77 16 42 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.11 2.11 6.67 -51.93 -0.35 1.77 16 44 H -0.01 -0.24 7.18 -51.93 -0.37 -0.61 16 45 H 0.03 0.62 7.40 -51.93 -0.38 0.24 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.09 1.29 7.99 -51.93 -0.41 0.87 16 49 H 0.09 1.23 7.04 -51.93 -0.37 0.87 16 50 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -32.81 378.50 -8.37 -41.17 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.94 Total: -1.17 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: -0.22 Total: 11.97 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -1.18 Total: -52.98 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -0.06 Total: -21.04 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.81 -8.37 -41.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601462538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.673 kcal (2) G-P(sol) polarization free energy of solvation -32.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds