Wall clock time and date at job start Tue Mar 31 2020 22:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.44549 * 2 1 4 4 C 1.54284 * 109.40982 * 119.64403 * 2 1 3 5 5 O 1.38013 * 109.45747 * 52.31111 * 4 2 1 6 6 C 1.42152 * 119.43855 * 63.36503 * 5 4 2 7 7 C 1.51537 * 108.75504 * 272.77332 * 6 5 4 8 8 C 1.53566 * 109.58723 * 91.39917 * 7 6 5 9 9 N 1.45121 * 109.46235 * 240.03570 * 2 1 3 10 10 C 1.34780 * 118.76086 * 149.28271 * 9 2 1 11 11 O 1.21352 * 119.99579 * 4.42704 * 10 9 2 12 12 C 1.49446 * 119.99920 * 184.42721 * 10 9 2 13 13 O 1.21344 * 120.00207 * 275.62674 * 12 10 9 14 14 N 1.34777 * 119.99886 * 95.90788 * 12 10 9 15 15 C 1.47083 * 120.88117 * 4.29264 * 14 12 10 16 16 C 1.53695 * 108.27474 * 128.75474 * 15 14 12 17 17 N 1.46896 * 109.25896 * 54.08516 * 16 15 14 18 18 C 1.46901 * 111.00590 * 172.60625 * 17 16 15 19 19 C 1.50703 * 109.46980 * 294.30360 * 18 17 16 20 20 H 1.08000 * 119.99673 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00195 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00229 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99899 * 359.97438 * 21 19 18 24 24 H 1.48507 * 109.46846 * 90.00312 * 23 21 19 25 25 H 1.48501 * 109.47148 * 209.99944 * 23 21 19 26 26 H 1.48497 * 109.47180 * 330.00500 * 23 21 19 27 27 C 1.46899 * 111.26886 * 296.75179 * 17 16 15 28 28 C 1.47081 * 120.88191 * 184.56955 * 14 12 10 29 29 H 1.09006 * 109.46904 * 201.45691 * 1 2 3 30 30 H 1.08998 * 109.47436 * 321.46195 * 1 2 3 31 31 H 1.09004 * 109.47168 * 81.46520 * 1 2 3 32 32 H 1.09002 * 109.53636 * 292.27949 * 4 2 1 33 33 H 1.09000 * 109.42419 * 172.27310 * 4 2 1 34 34 H 1.08993 * 109.59009 * 152.98804 * 6 5 4 35 35 H 1.09006 * 109.70697 * 32.61826 * 6 5 4 36 36 H 1.09001 * 109.45012 * 331.36192 * 7 6 5 37 37 H 1.09005 * 109.44995 * 211.43295 * 7 6 5 38 38 H 1.09007 * 109.16645 * 199.62667 * 8 7 6 39 39 H 1.08995 * 109.12717 * 80.39126 * 8 7 6 40 40 H 1.08997 * 109.62725 * 248.52408 * 15 14 12 41 41 H 1.09000 * 109.62916 * 9.10273 * 15 14 12 42 42 H 1.08994 * 109.65221 * 294.07896 * 16 15 14 43 43 H 1.09003 * 109.41885 * 173.94722 * 16 15 14 44 44 H 1.09001 * 109.46625 * 54.29281 * 18 17 16 45 45 H 1.08992 * 109.47437 * 174.29949 * 18 17 16 46 46 H 0.96998 * 120.00081 * 180.02562 * 22 21 19 47 47 H 1.08997 * 109.49798 * 303.15080 * 27 17 16 48 48 H 1.08996 * 109.50176 * 183.06251 * 27 17 16 49 49 H 1.09006 * 109.62528 * 350.89728 * 28 14 12 50 50 H 1.08999 * 109.62894 * 111.47816 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0427 -0.7197 1.2647 5 8 1.4451 -1.9600 1.3620 6 6 1.6880 -2.9335 0.3550 7 6 0.6854 -2.7374 -0.7642 8 6 1.2718 -1.7892 -1.8203 9 7 2.0135 -0.6834 -1.1854 10 6 3.1873 -0.2969 -1.7234 11 8 3.8574 0.5514 -1.1719 12 6 3.6636 -0.9130 -2.9989 13 8 4.2665 -1.9658 -2.9762 14 7 3.4283 -0.2964 -4.1741 15 6 2.7883 1.0271 -4.2173 16 6 3.6532 1.9525 -5.0879 17 7 3.8678 1.3239 -6.3981 18 6 4.5403 2.2476 -7.3215 19 6 3.6305 3.4117 -7.6187 20 1 2.6506 3.4601 -7.1672 21 6 4.0491 4.4147 -8.4670 22 7 3.2549 5.4303 -8.7269 23 14 5.7443 4.3311 -9.2474 24 1 5.6576 3.6114 -10.5435 25 1 6.2512 5.7077 -9.4786 26 1 6.6715 3.6079 -8.3406 27 6 4.6190 0.0680 -6.2700 28 6 3.7993 -0.9320 -5.4476 29 1 -0.3633 -0.9565 0.3759 30 1 -0.3634 0.8038 0.6402 31 1 -0.3634 0.1525 -1.0163 32 1 1.7965 -0.1276 2.1461 33 1 3.1239 -0.8415 1.1993 34 1 1.5742 -3.9320 0.7770 35 1 2.6990 -2.8146 -0.0350 36 1 -0.2310 -2.3079 -0.3595 37 1 0.4624 -3.7000 -1.2245 38 1 0.4609 -1.3776 -2.4213 39 1 1.9478 -2.3488 -2.4668 40 1 1.7919 0.9380 -4.6501 41 1 2.7173 1.4327 -3.2080 42 1 4.6148 2.1191 -4.6026 43 1 3.1425 2.9062 -5.2213 44 1 5.4599 2.6128 -6.8642 45 1 4.7777 1.7260 -8.2485 46 1 3.5493 6.1358 -9.3240 47 1 5.5672 0.2608 -5.7681 48 1 4.8088 -0.3451 -7.2606 49 1 4.3970 -1.8223 -5.2520 50 1 2.8982 -1.2057 -5.9963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601462538.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:48 Heat of formation + Delta-G solvation = -100.730600 kcal Electronic energy + Delta-G solvation = -31630.746220 eV Core-core repulsion = 27465.301523 eV Total energy + Delta-G solvation = -4165.444698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.52355 -41.02581 -39.66796 -38.98860 -36.92682 -36.17768 -34.48654 -34.31655 -32.44498 -31.89896 -30.62899 -27.98225 -27.80942 -27.08236 -25.85642 -24.81008 -23.40795 -22.56764 -22.24800 -21.09405 -19.93920 -19.26671 -18.96408 -18.30930 -17.89830 -17.58771 -17.31050 -16.86230 -16.61402 -16.18088 -16.13467 -16.04882 -15.64222 -15.50354 -15.29602 -15.04656 -14.57742 -14.49918 -14.33213 -14.12372 -13.99271 -13.71825 -13.28331 -13.21056 -13.06402 -12.92082 -12.74904 -12.68999 -12.62371 -12.40219 -12.33920 -12.29140 -12.01854 -11.97984 -11.88414 -11.45214 -11.33185 -10.78962 -10.78107 -10.71129 -10.07025 -9.89590 -9.17168 -8.28900 -6.31976 0.79575 0.86627 1.28843 1.34131 1.36192 1.45373 2.06390 2.33272 2.73484 2.85712 3.01161 3.08462 3.63914 3.70484 3.73965 3.89226 3.92100 3.98191 4.02744 4.08225 4.14098 4.19234 4.28257 4.38477 4.40741 4.51829 4.59018 4.60702 4.68448 4.70042 4.73760 4.74378 4.75414 4.86800 4.91587 4.92243 5.01368 5.03818 5.11000 5.16957 5.28807 5.47139 5.49697 5.79632 5.80884 5.97522 6.19868 6.50131 6.51708 6.54232 6.55264 6.74073 7.31638 8.86970 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022203 B = 0.002689 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.793158 B =10410.526213 C =10909.488127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.093 3.907 3 H 0.089 0.911 4 C 0.069 3.931 5 O -0.388 6.388 6 C 0.065 3.935 7 C -0.162 4.162 8 C 0.092 3.908 9 N -0.579 5.579 10 C 0.510 3.490 11 O -0.546 6.546 12 C 0.518 3.482 13 O -0.546 6.546 14 N -0.587 5.587 15 C 0.123 3.877 16 C 0.054 3.946 17 N -0.532 5.532 18 C 0.171 3.829 19 C -0.514 4.514 20 H 0.047 0.953 21 C 0.012 3.988 22 N -0.944 5.944 23 Si 0.941 3.059 24 H -0.262 1.262 25 H -0.285 1.285 26 H -0.257 1.257 27 C 0.036 3.964 28 C 0.123 3.877 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.129 0.871 33 H 0.021 0.979 34 H 0.113 0.887 35 H 0.029 0.971 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.015 0.985 43 H 0.082 0.918 44 H -0.019 1.019 45 H 0.036 0.964 46 H 0.267 0.733 47 H 0.019 0.981 48 H 0.103 0.897 49 H 0.102 0.898 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.729 -18.435 17.577 26.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 H 0.107 0.893 4 C -0.009 4.009 5 O -0.306 6.306 6 C -0.011 4.011 7 C -0.199 4.199 8 C -0.029 4.029 9 N -0.313 5.313 10 C 0.293 3.707 11 O -0.423 6.423 12 C 0.301 3.699 13 O -0.424 6.424 14 N -0.320 5.320 15 C 0.001 3.999 16 C -0.075 4.075 17 N -0.257 5.257 18 C 0.044 3.956 19 C -0.553 4.553 20 H 0.066 0.934 21 C -0.186 4.186 22 N -0.585 5.585 23 Si 0.765 3.235 24 H -0.187 1.187 25 H -0.210 1.210 26 H -0.182 1.182 27 C -0.093 4.093 28 C 0.001 3.999 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.146 0.854 33 H 0.039 0.961 34 H 0.130 0.870 35 H 0.048 0.952 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.034 0.966 43 H 0.100 0.900 44 H -0.001 1.001 45 H 0.054 0.946 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.672 -18.548 17.724 26.777 hybrid contribution 2.126 1.109 -0.625 2.478 sum -5.546 -17.439 17.098 25.045 Atomic orbital electron populations 1.22216 0.90660 1.04869 1.03481 1.22177 0.97619 0.97164 0.84004 0.89342 1.22427 0.95321 0.84957 0.98232 1.86262 1.71886 1.22923 1.49557 1.22390 0.97298 0.92454 0.88979 1.22636 1.00479 1.01034 0.95776 1.22312 0.97155 0.87094 0.96293 1.48244 1.19274 1.35147 1.28590 1.20378 0.82381 0.82110 0.85870 1.90800 1.55385 1.32956 1.63205 1.20281 0.80204 0.84675 0.84736 1.90762 1.41978 1.23336 1.86351 1.48328 1.58267 1.19740 1.05696 1.22039 0.97258 0.80399 1.00229 1.22339 0.98077 0.98190 0.88936 1.61855 1.48985 1.05046 1.09767 1.19960 0.92272 0.91249 0.92122 1.21213 1.02110 1.04518 1.27423 0.93444 1.25750 1.01138 0.94772 0.96904 1.70025 1.38688 1.11775 1.37984 0.85807 0.80232 0.77738 0.79706 1.18686 1.21033 1.18152 1.22585 0.94358 0.91091 1.01239 1.21947 1.01141 0.95361 0.81430 0.89374 0.89809 0.91396 0.85386 0.96119 0.86957 0.95223 0.87681 0.86885 0.88529 0.90693 0.87913 0.89715 0.96644 0.89987 1.00109 0.94556 0.92430 0.96225 0.87869 0.88008 0.87828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.21 71.98 0.59 -1.16 16 2 C 0.09 1.62 2.76 45.69 0.13 1.74 16 3 H 0.09 1.79 7.34 -2.39 -0.02 1.78 16 4 C 0.07 1.19 6.34 72.42 0.46 1.65 16 5 O -0.39 -6.43 8.90 -117.84 -1.05 -7.48 16 6 C 0.06 0.93 6.37 71.50 0.46 1.38 16 7 C -0.16 -1.63 5.54 30.31 0.17 -1.46 16 8 C 0.09 1.35 5.17 86.38 0.45 1.79 16 9 N -0.58 -11.71 2.12 -796.47 -1.69 -13.40 16 10 C 0.51 14.40 5.60 87.27 0.49 14.89 16 11 O -0.55 -18.95 16.32 -3.25 -0.05 -19.00 16 12 C 0.52 15.28 5.66 87.27 0.49 15.77 16 13 O -0.55 -18.18 16.07 -3.23 -0.05 -18.23 16 14 N -0.59 -16.29 3.00 -818.61 -2.46 -18.75 16 15 C 0.12 3.49 6.51 86.50 0.56 4.05 16 16 C 0.05 1.98 5.47 86.54 0.47 2.45 16 17 N -0.53 -20.52 4.62 -898.90 -4.15 -24.67 16 18 C 0.17 7.87 3.79 85.56 0.32 8.19 16 19 C -0.51 -28.44 8.96 25.60 0.23 -28.21 16 20 H 0.05 2.88 7.37 -2.91 -0.02 2.86 16 21 C 0.01 0.69 5.47 84.65 0.46 1.15 16 22 N -0.94 -57.46 13.96 21.45 0.30 -57.16 16 23 Si 0.94 43.21 27.47 68.60 1.88 45.10 16 24 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.26 -11.27 6.54 99.48 0.65 -10.62 16 27 C 0.04 1.11 5.62 86.39 0.49 1.60 16 28 C 0.12 3.13 6.61 86.35 0.57 3.70 16 29 H 0.09 0.89 4.41 -2.38 -0.01 0.88 16 30 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.75 7.48 -2.39 -0.02 0.73 16 32 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.03 0.58 7.41 -2.38 -0.02 0.56 16 36 H 0.11 0.87 5.22 -2.39 -0.01 0.86 16 37 H 0.11 0.67 8.14 -2.38 -0.02 0.65 16 38 H 0.10 1.08 7.74 -2.38 -0.02 1.06 16 39 H 0.07 1.32 6.08 -2.39 -0.01 1.31 16 40 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.08 2.34 6.26 -2.39 -0.01 2.32 16 42 H 0.02 0.60 8.14 -2.39 -0.02 0.59 16 43 H 0.08 3.41 6.67 -2.39 -0.02 3.39 16 44 H -0.02 -0.90 7.18 -2.39 -0.02 -0.91 16 45 H 0.04 1.62 7.40 -2.39 -0.02 1.60 16 46 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 47 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 48 H 0.10 2.84 7.99 -2.39 -0.02 2.82 16 49 H 0.10 2.49 7.04 -2.38 -0.02 2.47 16 50 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -72.81 378.50 -0.04 -72.85 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.89 Total: 13.19 kcal Atomic # 6 Polarization: 21.21 SS G_CDS: 6.34 Total: 27.55 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -8.00 Total: -113.97 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.15 Total: -44.71 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Total: -72.81 -0.04 -72.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601462538.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.878 kcal (2) G-P(sol) polarization free energy of solvation -72.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds