Wall clock time and date at job start Tue Mar 31 2020 23:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.46974 * 2 1 4 4 O 1.42900 * 109.47456 * 239.99824 * 2 1 3 5 5 C 1.52998 * 109.46790 * 119.99319 * 2 1 3 6 6 H 1.08991 * 109.47860 * 301.33869 * 5 2 1 7 7 N 1.46499 * 109.46858 * 61.34439 * 5 2 1 8 8 C 1.34774 * 119.99748 * 274.99493 * 7 5 2 9 9 O 1.21282 * 120.00161 * 359.97438 * 8 7 5 10 10 C 1.50708 * 119.99905 * 179.72738 * 8 7 5 11 11 C 1.52995 * 117.49528 * 248.62021 * 10 8 7 12 12 C 1.52996 * 60.00365 * 252.51129 * 11 10 8 13 13 C 1.50709 * 109.46917 * 181.34035 * 5 2 1 14 14 O 1.21283 * 119.99532 * 258.40758 * 13 5 2 15 15 N 1.34765 * 120.00039 * 78.40979 * 13 5 2 16 16 C 1.47079 * 120.88432 * 4.56429 * 15 13 5 17 17 C 1.53695 * 108.27816 * 128.75277 * 16 15 13 18 18 N 1.46901 * 109.25422 * 54.08628 * 17 16 15 19 19 C 1.46905 * 111.00020 * 172.60394 * 18 17 16 20 20 C 1.50701 * 109.46752 * 58.85268 * 19 18 17 21 21 H 1.08000 * 119.99802 * 5.37121 * 20 19 18 22 22 C 1.37870 * 119.99915 * 185.37031 * 20 19 18 23 23 N 1.31522 * 120.00031 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00250 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47380 * 89.99957 * 24 22 20 26 26 H 1.48495 * 109.47565 * 210.00226 * 24 22 20 27 27 H 1.48506 * 109.47127 * 330.00333 * 24 22 20 28 28 C 1.46894 * 111.26995 * 296.75441 * 18 17 16 29 29 C 1.47080 * 120.88096 * 184.84688 * 15 13 5 30 30 H 1.09001 * 109.47745 * 300.00660 * 1 2 3 31 31 H 1.09000 * 109.46682 * 60.00441 * 1 2 3 32 32 H 1.09000 * 109.47255 * 180.02562 * 1 2 3 33 33 H 0.96699 * 113.99571 * 299.99914 * 4 2 1 34 34 H 0.97001 * 120.00357 * 95.00013 * 7 5 2 35 35 H 1.08998 * 115.54835 * 34.33083 * 10 8 7 36 36 H 1.08996 * 117.50406 * 0.02562 * 11 10 8 37 37 H 1.09009 * 117.49883 * 145.02003 * 11 10 8 38 38 H 1.08993 * 117.50228 * 252.51648 * 12 11 10 39 39 H 1.08998 * 117.51770 * 107.48155 * 12 11 10 40 40 H 1.09000 * 109.63148 * 248.52936 * 16 15 13 41 41 H 1.09003 * 109.62686 * 9.10333 * 16 15 13 42 42 H 1.08995 * 109.65163 * 294.08433 * 17 16 15 43 43 H 1.09001 * 109.41674 * 173.94830 * 17 16 15 44 44 H 1.09000 * 109.47073 * 178.85350 * 19 18 17 45 45 H 1.08998 * 109.47014 * 298.85422 * 19 18 17 46 46 H 0.96997 * 119.99965 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.49577 * 303.14450 * 28 18 17 48 48 H 1.09004 * 109.49462 * 183.05922 * 28 18 17 49 49 H 1.08994 * 109.63127 * 350.89378 * 29 15 13 50 50 H 1.08998 * 109.63041 * 111.47504 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2493 6 1 1.6572 -0.2213 2.1391 7 7 1.5781 -2.1113 1.2333 8 6 0.3565 -2.4211 1.7108 9 8 -0.3604 -1.5491 2.1542 10 6 -0.1210 -3.8504 1.6887 11 6 -1.2674 -4.1975 0.7368 12 6 -1.5171 -4.1374 2.2450 13 6 3.5466 -0.6924 1.2661 14 8 4.1755 -1.6747 0.9336 15 7 4.1951 0.4247 1.6505 16 6 3.4549 1.5926 2.1520 17 6 4.0739 2.0159 3.4936 18 7 5.5171 2.2251 3.3166 19 6 6.1184 2.7986 4.5281 20 6 5.8803 1.8732 5.6934 21 1 5.4138 0.9124 5.5334 22 6 6.2580 2.2532 6.9638 23 7 6.8257 3.4235 7.1587 24 14 5.9636 1.1059 8.4082 25 1 7.1449 0.2245 8.5892 26 1 5.7497 1.9063 9.6406 27 1 4.7619 0.2746 8.1431 28 6 6.1932 0.9787 2.9328 29 6 5.6613 0.5106 1.5739 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7211 -1.5952 -1.2328 34 1 2.1516 -2.8089 0.8791 35 1 0.6488 -4.6057 1.8466 36 1 -1.6759 -3.3923 0.1262 37 1 -1.2518 -5.1815 0.2680 38 1 -1.6658 -5.0818 2.7686 39 1 -2.0900 -3.2927 2.6274 40 1 3.5319 2.4103 1.4354 41 1 2.4077 1.3273 2.2979 42 1 3.9079 1.2356 4.2363 43 1 3.6104 2.9433 3.8299 44 1 7.1905 2.9243 4.3770 45 1 5.6645 3.7678 4.7351 46 1 7.0917 3.6906 8.0524 47 1 5.9977 0.2128 3.6833 48 1 7.2667 1.1540 2.8624 49 1 6.0738 -0.4702 1.3375 50 1 5.9464 1.2263 0.8029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204629.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:22:16 Heat of formation + Delta-G solvation = -79.900958 kcal Electronic energy + Delta-G solvation = -31299.835215 eV Core-core repulsion = 27135.293758 eV Total energy + Delta-G solvation = -4164.541457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.09862 -39.76000 -38.04832 -37.27310 -36.36071 -34.59988 -34.42432 -32.42915 -31.45059 -30.68361 -28.74968 -27.55772 -25.39418 -24.53466 -23.21230 -22.80575 -22.70202 -21.79746 -20.52715 -20.43869 -18.93210 -18.06473 -17.40794 -16.96357 -16.58026 -16.25592 -15.88788 -15.53192 -15.18847 -15.06572 -14.82409 -14.72339 -14.48026 -14.02889 -13.84064 -13.74422 -13.38258 -13.15643 -12.96315 -12.70568 -12.45742 -12.20823 -12.01991 -11.93852 -11.90027 -11.48480 -11.20090 -11.12945 -11.05825 -11.02062 -10.90999 -10.75447 -10.68785 -10.62694 -10.34915 -10.15682 -9.97013 -9.82176 -9.68290 -9.26826 -8.54277 -8.50591 -7.33091 -6.10688 -4.20310 2.13722 2.49010 2.59932 3.14938 3.22690 3.30017 3.32878 3.48021 4.05640 4.25353 4.32212 4.34566 4.39679 4.48729 4.52032 4.71815 4.80294 4.89553 4.99326 5.07691 5.19497 5.20061 5.25295 5.39570 5.40257 5.53132 5.54585 5.56726 5.65230 5.70039 5.75445 5.80256 5.89263 5.98819 6.01529 6.06999 6.34978 6.54604 6.61607 6.64826 7.13970 7.16164 7.33220 7.42592 7.43020 7.80664 7.89336 7.90220 8.09901 8.12422 8.18843 8.89279 9.47400 10.94515 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012752 B = 0.003119 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.122089 B = 8973.717176 C =10196.919759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.101 3.899 3 H 0.112 0.888 4 O -0.551 6.551 5 C 0.091 3.909 6 H 0.120 0.880 7 N -0.710 5.710 8 C 0.545 3.455 9 O -0.531 6.531 10 C -0.195 4.195 11 C -0.152 4.152 12 C -0.146 4.146 13 C 0.521 3.479 14 O -0.543 6.543 15 N -0.598 5.598 16 C 0.102 3.898 17 C 0.051 3.949 18 N -0.540 5.540 19 C 0.188 3.812 20 C -0.553 4.553 21 H 0.055 0.945 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.888 3.112 25 H -0.280 1.280 26 H -0.285 1.285 27 H -0.275 1.275 28 C 0.049 3.951 29 C 0.117 3.883 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.372 0.628 34 H 0.412 0.588 35 H 0.126 0.874 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.081 0.919 44 H 0.029 0.971 45 H 0.037 0.963 46 H 0.263 0.737 47 H 0.041 0.959 48 H 0.079 0.921 49 H 0.088 0.912 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.590 -11.624 -15.199 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.040 3.960 3 H 0.130 0.870 4 O -0.356 6.356 5 C -0.018 4.018 6 H 0.138 0.862 7 N -0.365 5.365 8 C 0.332 3.668 9 O -0.408 6.408 10 C -0.216 4.216 11 C -0.190 4.190 12 C -0.183 4.183 13 C 0.308 3.692 14 O -0.421 6.421 15 N -0.330 5.330 16 C -0.021 4.021 17 C -0.079 4.079 18 N -0.264 5.264 19 C 0.063 3.937 20 C -0.592 4.592 21 H 0.073 0.927 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.716 3.284 25 H -0.206 1.206 26 H -0.210 1.210 27 H -0.200 1.200 28 C -0.081 4.081 29 C -0.005 4.005 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.219 0.781 34 H 0.250 0.750 35 H 0.144 0.856 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.127 0.873 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.100 0.900 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.098 0.902 49 H 0.106 0.894 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.326 -10.446 -15.398 23.483 hybrid contribution -0.030 -1.945 1.836 2.674 sum -14.356 -12.391 -13.563 23.315 Atomic orbital electron populations 1.22524 0.94605 1.03073 1.03029 1.22270 0.94268 0.96416 0.83028 0.86991 1.86618 1.77108 1.28935 1.42910 1.21697 0.92726 0.84952 1.02391 0.86231 1.45683 1.17773 1.08883 1.64141 1.19660 0.80891 0.89652 0.76590 1.90723 1.55086 1.49398 1.45580 1.22173 0.94456 0.95133 1.09882 1.22952 0.99114 1.03410 0.93489 1.22967 0.95387 1.03946 0.96008 1.20116 0.88935 0.83052 0.77133 1.90644 1.68273 1.33864 1.49341 1.48078 1.08157 1.14131 1.62652 1.22265 0.95015 0.87527 0.97316 1.22299 0.90722 1.01322 0.93530 1.62498 1.01751 1.24548 1.37621 1.19772 0.95059 0.95095 0.83819 1.21716 1.40896 1.03371 0.93205 0.92670 1.24945 0.94789 0.95022 0.98862 1.69936 1.40655 1.19779 1.22369 0.86653 0.78644 0.80887 0.82207 1.20576 1.21019 1.20013 1.22265 0.98881 0.92744 0.94163 1.21877 0.78027 1.02026 0.98612 0.90410 0.91960 0.92265 0.78056 0.75049 0.85645 0.88228 0.87684 0.87834 0.87256 0.90399 0.90365 0.93664 0.90017 0.95256 0.94455 0.92703 0.94036 0.90230 0.89392 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.70 8.08 37.16 0.30 -1.40 16 2 C 0.10 1.07 3.29 -26.73 -0.09 0.98 16 3 H 0.11 1.16 7.38 -51.92 -0.38 0.78 16 4 O -0.55 -6.23 12.99 -35.23 -0.46 -6.69 16 5 C 0.09 1.08 1.65 -69.08 -0.11 0.97 16 6 H 0.12 1.50 5.85 -51.93 -0.30 1.20 16 7 N -0.71 -7.39 4.31 -54.93 -0.24 -7.63 16 8 C 0.55 5.78 6.02 -10.98 -0.07 5.71 16 9 O -0.53 -7.08 13.39 5.56 0.07 -7.00 16 10 C -0.20 -1.51 6.19 -91.77 -0.57 -2.08 16 11 C -0.15 -0.92 10.23 -26.74 -0.27 -1.19 16 12 C -0.15 -1.05 10.04 -26.73 -0.27 -1.31 16 13 C 0.52 7.66 6.64 -10.99 -0.07 7.58 16 14 O -0.54 -9.16 15.36 5.56 0.09 -9.07 16 15 N -0.60 -8.94 3.00 -172.18 -0.52 -9.46 16 16 C 0.10 1.40 5.77 -3.36 -0.02 1.38 16 17 C 0.05 0.90 5.16 -3.46 -0.02 0.89 16 18 N -0.54 -10.82 4.83 -235.46 -1.14 -11.96 16 19 C 0.19 4.62 5.12 -4.97 -0.03 4.59 16 20 C -0.55 -14.78 7.75 -34.44 -0.27 -15.04 16 21 H 0.06 1.49 5.88 -52.49 -0.31 1.18 16 22 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 23 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 24 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.05 0.91 5.25 -3.70 -0.02 0.89 16 29 C 0.12 1.83 6.61 -3.60 -0.02 1.81 16 30 H 0.08 0.81 7.62 -51.93 -0.40 0.42 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.59 5.74 -51.93 -0.30 0.29 16 33 H 0.37 3.28 8.45 45.56 0.38 3.66 16 34 H 0.41 4.00 7.73 -40.82 -0.32 3.68 16 35 H 0.13 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.11 0.95 7.67 -51.93 -0.40 0.55 16 40 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.08 0.90 5.47 -51.93 -0.28 0.62 16 42 H 0.05 0.92 6.77 -51.93 -0.35 0.57 16 43 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 44 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 45 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.04 0.87 6.95 -51.93 -0.36 0.51 16 48 H 0.08 1.45 8.05 -51.93 -0.42 1.04 16 49 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 391.48 15.07 5.90 5.90 Total: -1.00 -32.04 391.48 -9.35 -41.39 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -7.15 Total: 7.63 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -1.62 Total: 5.51 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -1.15 Total: -53.92 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.30 Total: -22.77 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.04 -9.35 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204629.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.508 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds